LOC110495948 (LOC106574314)


Basic Information

Item Value
gene id LOC110495948
gene name LOC106574314
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27754174 ~ 27798978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571495.2
ctaatgttagctagcttgctaaatcgcGATTTTCGAAAATTAACTTTATTAACTTTATTAACTTTAAAATATGCAtaatcgtttgtctctacattaactaacatattcctgtcAACTGTACATATTTTTTGCATGATTCGTTATGACGTTTGAATCACTTTCATTTGAATCCATTCTAgtatttttgtcagccatcttcacTGAAGAAAGTCTCCAGCCTTGGGACGCATAGCGTCAAATTCGTCATGGGAACTGCTCCCTATGATTGGTCATCGCCCAGCGGTCGCCGCTGGTGATTTGCATAACGTTGGGAAAAGTTTATATTTTTCACCGCCTAAAGGTACCAGGTACTCTTAGCTTTCCTTCCGTTGAAATGAATGGGAAGTGGTGTTTCACCGCACGGCATCCTGTGCTAATTGGAACCGTTTTTGGAGTTGCCTAATTGGAACCGCAATTTAGAACAATGACGGACTCAACAGCCTCAGACCGGGTGAACACCATCCCGGATCCAATTATTGTCGATCAGTCGACTGTAAACGGACAGTGCGACCCGAAACATcaactgtcacccaaaatcaacaGCCACCCTAAATTCAAGATGGACCAGGAGATGAAAATTAGCGATAGCGTGGAGGGGCAAGGCTTACTGGAGAGCAGCATGAGGCTGAAGCCCCACGAAGCTCAAAGATACCGCAAGAAAGCGTTGTGGGTCTCCTGGGTTTCCATCTTTGTGACGCTGATCCTGGCAGTAGCAGCTTTCACTGTTTCCTTCATGAGACACAGTGCCTCGGCTTTCGGATTCGCTTTTGATGCCGCCCTGGACGTGCTGTCCTCCATCATCGTGGTGTGGCGCTATAGTAATGCCTCCGCCGTTCACTCTGCACACAGGGAGTACATagccTGTGTGATCCTGGGTGTGGTCTTCATCCTGTCCTCCCTGTGTATCCTGGGAAAGGCAATCCATGACCTGGCTACCAAGCTAATGCCTGAAGTGGATGACTTCCTCTTCAGTGTGTCCATCGTCAGTGGCGTGATGTGTGTCATTCTGGCCGTGGCCAAGTTCATGCTGGGTAGGGTGCTCACCAGCAGAGCCCTCATCACAGACGGTTTCAACTCCCTGGTGGGCGGGGTCATGGGCTTCTCCATCCTAATCAGTGCCAAGGTGTTCAAGCACGATCCCAAAGTGTGGTACCTGGACGGGTCCATAGGGGTCCTGATAGGCCTCATCATCCTGGCCTACGGGGTCAAGCTGCTGGTTGATATGGTCCCTCGAGTGCAACAGACAAGGAACTACGAGCGCTTTGAGTGACAGAAGACCACGGAAGGGCAGTGAGGGGGATGGGTTCTGTGTTATATACGGTAGAAGTACATCCAGTGTCTGTTCTAGGGTATGTATATCTACGCCCAGTCCCTATCCAGCTCAGCTCCATTCTTCCTGGTAGAGCTCTCCAGTCACCATGACAAACCTATTGATTGGTTTAGACCTCAAGGTGCCAGCCCACTGGTGTTTTAGTTAGACCCAAGTGGTCCATTTTGCAGCGTTCCTCCGGTCTCTCTAACTCCGAACCTGATCCGTCCATATGAGTCATTACAAAGTCAAAGAGAAGACTGAGGTTTCCCTCTATAGCTCCTTCTCTACTGAAGCAGGGGGAGGTGGAAGGACAGAACGTGCGCTGCTGAGTCGTCAGGAAATTGTCACTGCCTCTACAAAGGCACTGCACCGTCTCCACTGATTAGTCTGGTGTTCGTTCATATCTCTATCTCCCCTTGGACAACATGGCTGATTCAGATACGCATTGTAGGATCTCAGTCCTTATGGGATTTCAATGGTTTCTAATAGGCGCTTTCTTTTGATGAGTAACACTgtgagtgtgtcccaaatggcaccctattccctttatagggtactacttttgaccaccctattccctttattgcactacttttgaccatggcccattaAGTGCATCAATTAGGGTGGCATTTAGCACATACACCTATTTCTGTTTGACACCACTGTTCAAAGTAGATGTGTTGCTTTTATGTAGTCATGATGtagtaggggtggcaggtagcctagagagcattgggccagtaaccgaaagcttgctcgatcgaatccccaaggtaaatctgttgttctgcccctgaacaaggcagttaacccactgttcctaagtagtcactgtaaataagaatttgttctttaacatacttgcctagttaaataaagtatcACTTAGGATGGTAGTTGCAACTATTAGTAGCAGTAGGACATGTTTTCTATCCCCCCAAAAACAGCAGGGAAAATAGATTTCTGAGATGCCCATTGTAGACAGGCTGTAGTATGGAGGACAATAGTACAGCAGTACAGTATGTGCAACATGACAGAAGACTCatcttgtgtcccaaatggcaccccattccctacatagtcactatggaccctggtcaaaagtaatacactatagggaatagggtgctatttgggacaaaaCCTGTATCATTTGATTAGTGAATATGAAAGCACAAATGTCCCTGTCGCCAGCTCATGTATGGAATTGGTGTTTGCTTTATTGCTTAAGGGGTGTTGAATAAAAGCTTGTGGCAGACCATCAACAAACAA
>XM_021571493.2
agctaatgttagctagcttgctaaatcgcGATTTTCGAAAATTAACTTTATTAACTTTATTAACTTTAAAATATGCAtaatcgtttgtctctacattaactaacatattcctgtcAACTGTACATATTTTTTGCATGATTCGTTATGACGTTTGAATCACTTTCATTTGAATCCATTCTAgtatttttgtcagccatcttcacTGAAGAAAGTCTCCAGCCTTGGGACGCATAGCGTCAAATTCGTCATGGGAACTGCTCCCTATGATTGGTCATCGCCCAGCGGTCGCCGCTGGTGATTTGCATAACGTTGGGAAAAGTTTATATTTTTCACCGCCTAAAGGTACCAGGTACTCTTAGCTTTCCTTCCGTTGAAATGAATGGGAAGTGGTGTTTCACCGCACGGCATCCTGTGCTAATTGGAACCGTTTTTGGAGTTGCCTAATTGGAACCGCAATTTAGAACAATGACGGACTCAACAGCCTCAGACCGGGTGAACACCATCCCGGATCCAATTATTGTCGATCAGTCGACTGTAAACGGACAGTGCGACCCGAAACATcaactgtcacccaaaatcaacaGCCACCCTAAATTCAAGATGGACCAGGAGATGAAAATTAGCGATAGCGTGGAGGGGCAAGGCTTACTGGAGAGCAGCATGAGGCTGAAGCCCCACGAAGCTCAAAGATACCGCAAGAAAGCGTTGTGGGTCTCCTGGGTTTCCATCTTTGTGACGCTGATCCTGGCAGTAGCAGCTTTCACTGTTTCCTTCATGAGACACAGTGCCTCGGCTTTCGGATTCGCTgccccagagtctgcaacaccattaaGCAAGGGGCACTACCAAGCAAGCggaaccatgaagaccaaggagctctccaaacagTTTGATGCCGCCCTGGACGTGCTGTCCTCCATCATCGTGGTGTGGCGCTATAGTAATGCCTCCGCCGTTCACTCTGCACACAGGGAGTACATagccTGTGTGATCCTGGGTGTGGTCTTCATCCTGTCCTCCCTGTGTATCCTGGGAAAGGCAATCCATGACCTGGCTACCAAGCTAATGCCTGAAGTGGATGACTTCCTCTTCAGTGTGTCCATCGTCAGTGGCGTGATGTGTGTCATTCTGGCCGTGGCCAAGTTCATGCTGGGTAGGGTGCTCACCAGCAGAGCCCTCATCACAGACGGTTTCAACTCCCTGGTGGGCGGGGTCATGGGCTTCTCCATCCTAATCAGTGCCAAGGTGTTCAAGCACGATCCCAAAGTGTGGTACCTGGACGGGTCCATAGGGGTCCTGATAGGCCTCATCATCCTGGCCTACGGGGTCAAGCTGCTGGTTGATATGGTCCCTCGAGTGCAACAGACAAGGAACTACGAGCGCTTTGAGTGACAGAAGACCACGGAAGGGCAGTGAGGGGGATGGGTTCTGTGTTATATACGGTAGAAGTACATCCAGTGTCTGTTCTAGGGTATGTATATCTACGCCCAGTCCCTATCCAGCTCAGCTCCATTCTTCCTGGTAGAGCTCTCCAGTCACCATGACAAACCTATTGATTGGTTTAGACCTCAAGGTGCCAGCCCACTGGTGTTTTAGTTAGACCCAAGTGGTCCATTTTGCAGCGTTCCTCCGGTCTCTCTAACTCCGAACCTGATCCGTCCATATGAGTCATTACAAAGTCAAAGAGAAGACTGAGGTTTCCCTCTATAGCTCCTTCTCTACTGAAGCAGGGGGAGGTGGAAGGACAGAACGTGCGCTGCTGAGTCGTCAGGAAATTGTCACTGCCTCTACAAAGGCACTGCACCGTCTCCACTGATTAGTCTGGTGTTCGTTCATATCTCTATCTCCCCTTGGACAACATGGCTGATTCAGATACGCATTGTAGGATCTCAGTCCTTATGGGATTTCAATGGTTTCTAATAGGCGCTTTCTTTTGATGAGTAACACTgtgagtgtgtcccaaatggcaccctattccctttatagggtactacttttgaccaccctattccctttattgcactacttttgaccatggcccattaAGTGCATCAATTAGGGTGGCATTTAGCACATACACCTATTTCTGTTTGACACCACTGTTCAAAGTAGATGTGTTGCTTTTATGTAGTCATGATGtagtaggggtggcaggtagcctagagagcattgggccagtaaccgaaagcttgctcgatcgaatccccaaggtaaatctgttgttctgcccctgaacaaggcagttaacccactgttcctaagtagtcactgtaaataagaatttgttctttaacatacttgcctagttaaataaagtatcACTTAGGATGGTAGTTGCAACTATTAGTAGCAGTAGGACATGTTTTCTATCCCCCCAAAAACAGCAGGGAAAATAGATTTCTGAGATGCCCATTGTAGACAGGCTGTAGTATGGAGGACAATAGTACAGCAGTACAGTATGTGCAACATGACAGAAGACTCatcttgtgtcccaaatggcaccccattccctacatagtcactatggaccctggtcaaaagtaatacactatagggaatagggtgctatttgggacaaaaCCTGTATCATTTGATTAGTGAATATGAAAGCACAAATGTCCCTGTCGCCAGCTCATGTATGGAATTGGTGTTTGCTTTATTGCTTAAGGGGTGTTGAATAAAAGCTTGTGGCAGACCATCAACAAACAA
>TU1755743
TTCCGTTGAAATGAATGGGAAGTGGTGTTTCACCGCACGGCATCCTGTGCTAATTGGAACCGCAATTTAGAACAATGACGGACTCAACAGCCTCAGACCGGGTGAACACCATCCCGGATCCAATTATTGTCGATCAGTCGACTGTAAACGGACAGTGCGACCCGAAACATcaactgtcacccaaaatcaacaGCCACCCTAAATTCAAGATGGACCAGGAGATGAAAATTAGCGATAGCGTGGAGGGGCAAGGCTTACTGGAGAGCAGCATGAGGCTGAAGCCCCACGAAGCTCAAAGATACCGCAAGAAAGCGTTGTGGGTCTCCTGGGTTTCCATCTTTGTGACGCTGATCCTGGCAGTAGCAGCTTTCAagccTGTGTGATCCTGGGTGTGGTCTTCATCCTGTCCTCCCTGTGTATCCTGGGAAAGGCAATCCATGACCTGGCTACCAAGCTAATGCCTGAAGTGGATGACTTCCTCTTCAGTGTGTCCATCGTCAGTGGCGTGATGTGTGTCATTCTGGCCGTGGCCAAGTTCATGCTGGGTAGGGTGCTCACCAGCAGAGCCCTCATCACAGACGGTTTCAACTCCCTGGTGGGCGGGGTCATGGGCTTCTCCATCCTAATCAGTGCCAAGGTGTTCAAGCACGATCCCAAAGTGTGGTACCTGGACGGGTCCATAGGGGTCCTGATAGGCCTCATCATCCTGGCCTACGGGGTCAAGCTGCTGGTTGATATGGTCCCTCGAGTGCAACAGACAAGGAACTACGAGCGCTTTGAGTGACAGAAGACCACGGAAGGGCAGTGAGGGGGATGGGTTCTGTGTTATATACGGTAGAAGTACATCCAGTGTCTGTTCTAGGGTATGTATATCTACGCCCAGTCCCTATCCAGCTCAGCTCCATTCTTCCTGGTAGAGCTCTCCAGTCACCATGACAAACCTATTGATTGGTTTAGACCTCAAGGTGCCAGCCCACTGGTGTTTTAGTTAGACCCAAGTGGTCCATTTTGCAGCGTTCCTCCGGTCTCTCTAACTCCGAACCTGATCCGTCCATATGAGTCATTACAAAGTCAAAGAGAAGACTGAGGTTTCCCTCTATAGCTCCTTCTCTACTGAAGCAGGGGGAGGTGGAAGGACAGAACGTGCGCTGCTGAGTCGTCAGGAAATTGTCACTGCCTCTACAAAGGCACTGCACCGTCTCCACTGATTAGTCTGGTGTTCGTTCATATCTCTATCTCCCCTTGGACAACATGGCTGATTCAGATACGCATTGTAGGATCTCAGTCCTTATGGGATTTCAATGGTTTCTAATAGGCGCTTTCTTTTGATGAGTAACACTgtgagtgtgtcccaaatggcaccctattccctttatagggtactacttttgaccaccctattccctttattgcactacttttgaccatggcccattaAGTGCATCAATTAGGGTGGCATTTAGCACATACACCTATTTCTGTTTGACACCACTGTTCAAAGTAGATGTGTTGCTTTTATGTAGTCATGATGtagtaggggtggcaggtagcctagagagcattgggccagtaaccgaaagcttgctcgatcgaatccccaaggtaaatctgttgttctgcccctgaacaaggcagttaacccactgttcctaagtagtcactgtaaataagaatttgttctttaacatacttgcctagttaaataaagtatcACTTAGGATGGTAGTTGCAACTATTAGTAGCAGTAGGACATGTTTTCTATCCCCCCAAAAACAGCAGGGAAAATAGATTTCTGAGATGCCCATTGTAGACAGGCTGTAGTATGGAGGACAATAGTACAGCAGTACAGTATGTGCAACATGACAGAAGACTCatcttgtgtcccaaatggcaccccattccctacatagtcactatggaccctggtcaaaagtaatacactatagggaatagggtgctatttgggacaaaaCCTGTATCATTTGATTAGTGAATATGAAAGCACAAATGTCCCTGTCGCCAGCTCATGTATGGAATTGGTGTTTGCTTTATTGCTTAAGGGGTGTTGAATAAAAGCTTGTGGCAGACCATCAACAAACAACATGACTGGAGCCAAAGACTCTAGCCAGAGGTTACTAATCTGGAATTAAAACAAGCCTTTCTGTGCACTACAGCCAAATCTGTTGGCTAGAACACAACAAGTCGTCCCTTTTTAGGCCATTCCCTCTTCTTTAATTCCTTAACAAAATCTGAGGGGGTAAATGCGGTCTTCCTGGCAAGTAAAT

Function

NR:

description
Transmembrane protein 163

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571495.2 False 2626 mRNA 0.47 8 27754358 27798976
XM_021571493.2 False 2709 mRNA 0.47 9 27754358 27798978
TU1755743 True 2285 TUCP 0.47 7 27754174 27798613

Neighbor

gene id symbol gene type direction distance location
LOC110495945 LOC106574379 coding downstream 146924 27573531 ~ 27607434 (-)
LOC118941127 NA coding downstream 227911 27523859 ~ 27526447 (-)
LOC110495941 LOC100196748 coding downstream 359018 27388709 ~ 27395340 (-)
LOC110495938 LOC106574308 coding downstream 389994 27257486 ~ 27364364 (-)
LOC110495936 LOC106574306 coding downstream 534885 27215066 ~ 27219473 (-)
cpb2 cpb2 coding upstream 9196 27808174 ~ 27819821 (-)
LOC110496785 LOC106574363 coding upstream 40792 27839770 ~ 27914607 (-)
LOC110495957 LOC106574318 coding upstream 149800 27948778 ~ 27974405 (-)
prkag3a LOC106575098 coding upstream 175830 27974808 ~ 27982705 (-)
LOC110495959 LOC106574321 coding upstream 186488 27985466 ~ 27995296 (-)
G1533722 NA non-coding downstream 41366 27712586 ~ 27712992 (-)
G1533686 NA non-coding downstream 95081 27658996 ~ 27659277 (-)
G1533685 NA non-coding downstream 95616 27658542 ~ 27658742 (-)
G1533680 NA non-coding downstream 99299 27654810 ~ 27655059 (-)
G1533679 NA non-coding downstream 99836 27654212 ~ 27654522 (-)
G1533783 NA non-coding upstream 31995 27830973 ~ 27833037 (-)
G1533845 NA non-coding upstream 127314 27926292 ~ 27926680 (-)
G1533860 NA non-coding upstream 146691 27945669 ~ 27945957 (-)
LOC110495955 LOC106574324 non-coding upstream 242955 27995381 ~ 28092196 (-)
LOC110495961 LOC106574325 non-coding upstream 325634 28124599 ~ 28199758 (-)
G1533378 NA other downstream 564809 27187622 ~ 27189549 (-)
G1531236 NA other downstream 2045484 25696539 ~ 25708874 (-)
LOC110495915 NA other downstream 2180687 25571910 ~ 25574981 (-)
G1531142 NA other downstream 2231178 25519421 ~ 25523180 (-)
G1530967 LOC106574270 other downstream 2603364 25150068 ~ 25150994 (-)
LOC110495963 LOC106574327 other upstream 552400 28241494 ~ 28368147 (-)
G1536703 NA other upstream 2485394 30284372 ~ 30284762 (-)
G1537022 NA other upstream 2720914 30519892 ~ 30525373 (-)

Expression


Co-expression Network