si:dkey-1h24.6 (LOC106574316)


Basic Information

Item Value
gene id si:dkey-1h24.6
gene name LOC106574316
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27925782 ~ 27931338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571503.2
atctgactaactgactgactgactgtctgttgcAGGAGACAGTCACATAACCACAGACAAACCCCACGTTGTGCGATGGTTGTCACTGACAGGTGCTAGGTAGGCCTATGTAACAACCGCGTGATGAGTAACTCTGCCTGAGACCTGAGAGCTTGCATTAGCTctagctcagcaggctaacacagtcttgtgggcAAGACCCAGGTTCGAACCCCGGTCACTCACATTGGTGCTGTAGCCCAGGTGGGTTTCTGCGAGTTCTACCAGAAGCAGTGAAAGATGATATAAAGTGAATCTACATAACAGTTCTGAGATAAGAAGGGCGAAATCAAACATGACTAATGCGATACGAGGTTCCAAGCCCTAACACACAGAGAAGTATCAAATTCAAAGGGCATCAAAGGTCACACACCGTTAGAGGGCGGATACTCTTGTGAAGTTCAGAGTGCACTGCCACAGAGTGCGGATGTTTTTTCCTTAAGAGTCTGTGCAGTCAGTCGCCCTGTTAGATGTGCAGCAGAGAGAGCGTTGCTTACAGTCAACGAGGGCCAGATTGTTGGTCACAGTGAAGTGACAGGGAAGGATGTTATGAGATGTACGCTGTCATCGTGTGACGAGCATGTGTTGAGTGATGTCTAGGTAGAGCAGAGCAGTCACTGTCTCGGTCTGGTTGGCATACAGTGTATCGTCTCATTTACCCTGATTGTTGTGCACTGTAAAGGGATACTAGGGGAGCTTCAATTTCACCACAAAACTGAGGACTTTCAAGATGAACGTTTACTGGATACCCAcaatcctcctctccctctgcctctccagtGCTGCCAACATGATAAGCTCCCACAACTGTAAAGACAAGCTTAGAACGTTCCATGTGGTCCGTGTGTCTGTCAACGGCACTGCATCGGTCAGCTGCCCCAACCTGACAGGCAAGGACCAGGAGGAAATGAGATTCCACCTTTACTTGGGCTTGGTCGAGGTTGGCAACCACACTCACGACAGTGCTCACAACCACAACTCCACAGAGACCGTGAGTCCTGTTGGGGAGGGTCTGGGGCTGAGGGTGAACGAACAGGACCATACGGTCAGTTTTGTCCTCTCTGGAATGACCACGGAGCGCGCTGGGGTCTATACCTGTGAGGGGCAACCCATGTACCCACCTCCCATTGAGAAAGTACAAGACGAGACTCAGACTGTGGTCCTGGTTGAAGCATACCAGTGCCAGGCAGGAAAGCCTGTGGGATGTGTAGGCTCTAGAGTGGATGGTGTCCCTGTTTGGGCATGGGTGCTGGGGTTCTGGATCACCATCATCTATGGCCTGGCTGTCACTGTCATCGCCTTTGTCATCTGGCTCAGACTGAGGAGAGTGAAGTGTTCCCAGAGCGACTACATGAACATCAAACCCAAAGCTCCACTCTGGGGGCCCAGGAAGAAGCAGGGGGTCCGGCATCCAATCCGAATGGGACGATACTGATCAGTCATCCTCAGACAAAAGCAACACGAGAGTCGAGCCTTTATTGGCCCTTGAGGGCTGACTGGAGAAACAGACAAAGCTCTTTATGTAAATACAAAAGCTAGCTCTTCAAATTATGTGGTGTACATCTAATTGTTCATCTGATTGTGTGTAAATAAAGAGAGTTGTCTTAGAAA
>TU1755053
TGTGCAGCAGAGAGAGCGTTGCTTACAGTCAACGAGGGCCAGATTGTTGGTCACAGTGAAGTGACAGGGAAGGATGTGTTGAGTGATGTCTAGGTAGAGCAGAGCAGTCACTGTCTCGGTCTGGTTGGCATACAGTGTATCGTCTCATTTACCCTGATTGTTGTGCACTGTAAAGGGATACTAGGGGAGCTTCAATTTCACCACAAAACTGAGGACTTTCAAGATGAACGTTTACTGGATACCCAcaatcctcctctccctctgcctctccagtGCTGCCAACATGATAAGCTCCCACAACTGTAAAGGTAAGACCTGGGCCTGCTTAAAAGCTCACATTCTATAGTAGTTATGACTGAAAACATGATGTATTATGTATACTAAGTACTATC
>TU1755054
TGTGCAGCAGAGAGAGCGTTGCTTACAGTCAACGAGGGCCAGATTGTTGGTCACAGTGAAGTGACAGGGAAGGATGTGTTGAGTGATGTCTAGGTAGAGCAGAGCAGTCACTGTCTCGGTCTGGTTGGCATACAGTGTATCGTCTCATTTACCCTGATTGTTGTGCACTGTAAAGGGATACTAGGGGAGCTTCAATTTCACCACAAAACTGAGGACTTTCAAGATGAACGTTTACTGGATACCCAcaatcctcctctccctctgcctctccagtGCTGCCAACATGATAAGCTCCCACAACTGTAAAGTATCAACAAATGTCACATCAGGCAGGATCCATAGCACTACCAGAACATTCTGATAACTGGAACAAAAGCAAAAGGTGGACCAATCAAAGAGTTGCAGATCATTCAAGATTG

Function

NR:

description
T-cell-specific surface glycoprotein CD28-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571503.2 False 1650 mRNA 0.50 4 27925782 27931338
TU1755053 False 392 lncRNA 0.45 2 27926292 27926719
TU1755054 True 419 lncRNA 0.46 3 27926292 27927085

Neighbor

gene id symbol gene type direction distance location
LOC110495952 NA coding upstream 93877 27829955 ~ 27843859 (+)
alg11 alg11 coding upstream 96440 27820568 ~ 27829342 (+)
LOC110495947 LOC106575089 coding upstream 175722 27629477 ~ 27750060 (+)
LOC118941128 NA coding upstream 358370 27556403 ~ 27567412 (+)
LOC110495944 LOC106574312 coding upstream 377316 27526452 ~ 27548466 (+)
LOC118941047 mdh1b coding downstream 6694 27938032 ~ 27940798 (+)
LOC110495958 LOC106574318 coding downstream 12035 27943362 ~ 27958807 (+)
LOC110496786 NA coding downstream 543011 28474349 ~ 28479668 (+)
LOC110495966 LOC106575106 coding downstream 590142 28521480 ~ 28595208 (+)
LOC110496787 LOC106575108 coding downstream 702473 28633811 ~ 28644214 (+)
G1533099 NA non-coding upstream 1907 27921605 ~ 27923875 (+)
G1533033 NA non-coding upstream 74731 27850464 ~ 27851051 (+)
G1532920 NA non-coding upstream 114891 27805255 ~ 27810891 (+)
G1532837 NA non-coding upstream 449242 27476281 ~ 27476540 (+)
G1533122 NA non-coding downstream 46779 27978117 ~ 27981282 (+)
G1533123 NA non-coding downstream 48644 27979982 ~ 27980618 (+)
G1533060 LOC106574321 non-coding downstream 54133 27985471 ~ 27988152 (+)
G1533062 NA non-coding downstream 64164 27995502 ~ 28053987 (+)
G1532307 NA other upstream 1168105 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 1982104 25930184 ~ 25943678 (+)
G1530923 LOC106574292 other upstream 2086047 25838506 ~ 25840353 (+)
G1530785 NA other upstream 2354436 25566471 ~ 25571346 (+)
G1533121 LOC106574322 other downstream 43475 27974813 ~ 28038476 (+)
LOC110495972 NA other downstream 801437 28732589 ~ 28735229 (+)
G1534488 LOC106574337 other downstream 872690 28804028 ~ 28804673 (+)
G1534495 NA other downstream 881491 28812829 ~ 28813103 (+)

Expression


Co-expression Network