LOC118941047 (mdh1b)


Basic Information

Item Value
gene id LOC118941047
gene name mdh1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27938032 ~ 27940798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118941047
gggcagaacgacagatttgtaccttgtcagctcggggattttaactcgcaacctttcggttactagtccaacgctctaaccactaggctaccctgatactaggctaccctgactatCAGGGTAGACTAACCACTAGGTTAGGAGGACCACTGcctgaggacagagagggtggaggacgAGGAAGAAAGCAAGGTATGTAGTTTGAATGGCTCGTGGGTTAGTTAGAGCACGGTGaaagcaacaccagggttgtgggttggatTCTTGTATCATCCACTCCACATACGCTGAACATATGTCCAGTTCTTTCAGTGTTGACAGTTCtttaagttgctttggataaaagtgtctgctaaatgaacataTTATTTTTAAGGTGAGAAAGGTGTCGGAGTGTTACCAACCGTATGGGCACCTCAACGACGAAAGGGCGCACATGAACGTGGCGGTGATTGTGGCTGGGAACTCCTCGGTTAATCTGAAGTGCTCCCTTTTGCTAGAGAATGCTCCCTCGGTTGACAGCGGACGCTTTGTGGGCATGGCAAGTCAACTGGAGTACGAGGCGGGGCCCACATTGCACAGAAGCTGTCTGTGAAGACTGCAGATGTGACAGATGTCATCGGTTGGGGCAACATCAGCGGCAGTTCCCATGTTGACCTACAGAGGGCGAAGGTTTTCCAATACAAAGGGGCCAGCTGGGGACCATCAGATTTTTCTCAGCCAGTCCTAGAGATTATATATGACAGGAAATGGCTACAGTCTGACTTTCTGAATTTGGTCAGTTCCCAACGTGCCACTGTAGCCTCCAAGTCCCAGAGGGCTACAGCCATATCAGCCACTAATAGGATCATTGCGGTTCTAAAGGCCTGGAACTGCAACTCTTCTGCTAAGGAGGTCCTCTCCTTTGGCATACTCAGCACAGGACAGTACAACCTCCCAGCTGGTGTAGTATTCTCAATGCCAGTGAGCCTCCAGGATGGTAGATGGTCCGTGTTGTCTGATGTAATTGATGATGAGAAGAGGGCCACACTGCAGATTGCTGCAGACCAACTCCGGGAGGAGGAAGATCTTGCATCAAGGACAAGAAAAGACACTGCATGAATTTACACTATTTTCTGACGCACTTCCTGTCAGAGTTGTAATATGTTTATTTTGA

Function

symbol description
mdh1b Predicted to enable L-malate dehydrogenase activity. Predicted to be involved in NADH metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human MDH1B (malate dehydrogenase 1B).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118941047 True 1156 mRNA 0.49 5 27938032 27940798

Neighbor

gene id symbol gene type direction distance location
si:dkey-1h24.6 LOC106574316 coding upstream 6694 27925782 ~ 27931338 (+)
LOC110495952 NA coding upstream 106127 27829955 ~ 27843859 (+)
alg11 alg11 coding upstream 108690 27820568 ~ 27829342 (+)
LOC110495947 LOC106575089 coding upstream 187972 27629477 ~ 27750060 (+)
LOC118941128 NA coding upstream 370620 27556403 ~ 27567412 (+)
LOC110495958 LOC106574318 coding downstream 2575 27943362 ~ 27958807 (+)
LOC110496786 NA coding downstream 533551 28474349 ~ 28479668 (+)
LOC110495966 LOC106575106 coding downstream 580682 28521480 ~ 28595208 (+)
LOC110496787 LOC106575108 coding downstream 693013 28633811 ~ 28644214 (+)
LOC110495968 LOC106574333 coding downstream 705783 28646581 ~ 28672693 (+)
G1533099 NA non-coding upstream 14157 27921605 ~ 27923875 (+)
G1533033 NA non-coding upstream 86981 27850464 ~ 27851051 (+)
G1532920 NA non-coding upstream 127141 27805255 ~ 27810891 (+)
G1533122 NA non-coding downstream 37319 27978117 ~ 27981282 (+)
G1533123 NA non-coding downstream 39184 27979982 ~ 27980618 (+)
G1533060 LOC106574321 non-coding downstream 44673 27985471 ~ 27988152 (+)
G1533062 NA non-coding downstream 54704 27995502 ~ 28053987 (+)
G1532307 NA other upstream 1180355 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 1994354 25930184 ~ 25943678 (+)
G1530923 LOC106574292 other upstream 2098297 25838506 ~ 25840353 (+)
G1530785 NA other upstream 2366686 25566471 ~ 25571346 (+)
G1533121 LOC106574322 other downstream 34015 27974813 ~ 28038476 (+)
LOC110495972 NA other downstream 791977 28732589 ~ 28735229 (+)
G1534488 LOC106574337 other downstream 863230 28804028 ~ 28804673 (+)
G1534495 NA other downstream 872031 28812829 ~ 28813103 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G7547 NA non-coding NC_056699.1 CM032068.1 28773354 ~ 28774166 (-)