LOC110495958 (LOC106574318)


Basic Information

Item Value
gene id LOC110495958
gene name LOC106574318
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27943362 ~ 27958807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571508.2
TGCTCTGAAGCTGTCTTTTCCCTCTCGCGCTCTCTCAACGGCTCGCTAGACAGACGCTTACAAAAAGGCGCGTAGTAAAGATTAaatagtcggaagtttacaagtGATCTTGATTCATTTACTCGGAAACTCGATTTCAACATGAGGGAGATTGTTCATCTGCAGGCCGGTCAATGTGGAAATCAGATCGGTGCCAAGTTTTGGGAGGTTATCAGTGACGAGCATGGAATAGACCCAACAGGCACTTATCATGGAGATAGCGATCTGCAGCTTGAGAGAATCAACGTGTACTATAATGAGGCAACAGGTGGCAAGTATGTTCCTCGTGCCATTCTAGTTGATCTGGAGCCTGGCACGATGGACTCTGTCCGCTCTGGACCATTCGGCCAAATATTCAGACCGGACAACTTTGTCTTCGGACAGAGTGGTGCAGGTAACAACTGGGCAAAGGGCCATTACACTGAGGGAGCAGAGCTGGTAGACTCTGTCCTGGATGTGGTGAGAAAGGAAGCCGAGAGCTGCGACTGTCTTCAGGGTTTCCAGCTCACCCACTCCCTTGGAGGTGGCACAGGCTCTGGTATGGGTACCCTGTTGATTAGCAAGATCCGTGAGGAGTACCCTGACCGCATCATGAACACCTTCAGTGTGGTGCCCTCCCCCAAAGTGTCAGACACTGTGGTGGAGCCCTACAATGCCACCCTGTCTGTGCATCAGCTAGTGGAGAACACTGACGAGACTTATTGCATCGACAACGAGGCCTTGTATGACATCTGCTTTCGCACTCTGAAGCTGACAACTCCCACTTATGGGGACCTCAACCACCTGGTGTCAGCCACCATGAGTGGTGTCACCACCTGCCTGCGCTTCCCCGGCCAGCTCAACGCCGACCTACGTAAGCTAGCTGTCAACATGGTCCCATTCCCCCGCCTGCATTTCTTCATGCCAGGCTTTGCCCCCCTCACCAGCAGAGGCAGCCAGCAGTACAGAGCGCTGACGGTGCCTGAACTCACCCAGCAGATGTTCGATGCCAAGAACATGATGGCTGCCTGCGACCCCCGTCACGGCCGCTACCTCACTGTGGCCGCCATTTTCCGTGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTGAATGTGCAGAACAAGAACAGCAGCTACTTCGTCGAATGGATCCCCAACAATGTCAAGACTGCAGTCTGCGACATCCCGCCCCGCGGCCTTAAAATGGCCGCTACCTTCATCGGCAATAGCACGGCCATCCAGGAGCTGTTTAAGCGCATCTCTGAGCAGTTCACAGCCATGTTCCGCCGCAAGGCGTTCCTGCACTGGTACACCGGAGAAGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGACCTGGTATCTGAGTACCAGCAGTACCAGGATGCCACCGCCGAGGAGGAGGGCGAgtttgaagaggagggagaagaggatatGGGTTAGACGGATAAAAGGGATTTTAAAAATCAATTTCAACTGCATTCCATTCCTGGTTTCAGTTTATTATTTTATTCTTTCACTGCACAAAGAGCTGCTGTCAGTGTTTAACCTGTTGTAATTGCAATAAATCTTATCAGCATTTTTTGAA
>TU1755023
AATTCCTCACGTGCTCTGAAGCTGTCTTTTCCCTCTCGCGCTCTCTCAACGGCTCGCTAGACAGACGCTTACAAAAAGGCGCGTAGTAAAGATTAaatagtcggaagtttacaagtGATCTTGATTCATTTACTCGGAAACTCGATTTCAACATGAGGGAGATTGTTCATCTGCAGGCCGGTCAATGTGGAAATCAGATCGGTGCCAAGTTTTGGGAGGTTATCAGTGACGAGCATGGAATAGACCCAACAGGCACTTATCATGGAGATAGCGATCTGCAGCTTGAGAGAATCAACGTGTACTATAATGAGGCAACAGGT
>TU1755007
CCTGGTTTCAGTTTATTATTTTATTCTTTCACTGCACAAAGAGCTGCTGTCAGTGTTTAACCTGTTGTAATTGCAATAAATCTTATCAGCATTTTTTGAACTTGTTTGTGTTCCTTTGTAGATGTAAAAGATCTACTAAAAAACTGATGAGTAGTTTCTGAAAAACAGGATACATTTTAAAATAGATACCCTTCTTCACAATACAGTTCTTGTTAGGTGCCTTTATAGATTAAGAAGCAGTAAAAGCATAGGCAAACATTTCTATAACACAATTTGTTAATATAATTTTATAGTTGATTACAGTGGGATTACAGCAAAATAAATTACTTTTTAAATGAATCGCACTAAATTGCCTCATTGGCAACGTAGTGTTATCGGAATTCTTTAAGGGACATTGGTGTAATAAAAGCTGCAACATACAAATTGCATGCTTACCCAAGGTCTTGCTCCCTTCAAGTTTGGAGAGGACAATTGCATTTTTAATGCTTGGTAATCACATGCAATGTTCCAAATTGCTCTCATTTTGAGGGAAACTTACAGAAGTGCTTGGAAGGCATTGGCCGGGAAAAAGGTTAGTTTATATTACAATACAGTGCACAGGGACAACTTGGGTTGGGGAACTTTAGGCTATACCATTGGTGGACGCCATTTTCTACTTCACATTAATTTTTCGTCTACATATTAGTCTCCATGTGCAACGGTATCTTCCATTGCGCAAACTAAAGTACCTCTCACTCCTTGAGATTCAGATAGGCACACTTGCAGCAACAAAGCTGTCCTAGTTAAATTGGGGTCAAGCTGAATTCCCACTAATGACCAATTTATGAAATTAAGAATTCCTATCATCAGGTTGCAACATTTATAACCCATTGTTACATAGGACCTAGGTAACATACCTTTTTGGGGAGATAATGCAATGCATGTATTCCCTACCTTCAATAATTTGTCATAGCGAATCGCAGTTGTCTGTGGGATTGCCATGACAAAACAAGCATAAATAACCTTTAGATGTAAGGTACCTAGTCTCTAGACAGACTGGTTGCCTCCCACAATGTTACAAATGTTTTGCCCTAGGTCTGGGATTTCCAAGAGTATTAAGTACCCATAACATTTAAGTTGTACACATATTAAGCAATTGGTGGAGGTGAAGTAGCACTTGCATTAATTTACAAACATTACAGAATACAACTAACAAAATAGACCTTTGAGATGTTGACAATGAGCAATTGAAAAGGTTGTCAGCATACCACAGTAAGTACGTTTTATATGGGTAAAGAAATTGACCATCACCTGGTTTGGGGATAAAAAGATAATACACCCTAAAATTTAAAGATCTATTATTGTTTGGGAGATTTCACAATTTTGCTGAGTGTGGAACTTACTTGAGGGGCTGCTGGTCATTAAATTGCCTTCGATAAAACTCCCAAACATGTATTTGTGCGTATGATGTCCAACACAAAGACCTATTATTGTGAATCTGAAATGTAATTTTAATAGATGGTTAAAATAAGTCATTTGTGTATGGCTAATTACTGCAGTACTAAGTTTTGTTTGGAAGATTTCACAATTGAGTGCTGAATTTACTTGAGGGGTTGCTGGTCAATAAACTGCCTTCAAAGAAACTCCCAAATGTACGCATTTGTGCATAAATGATGAAAACGTGTTTTGCTGAAGATCTAAATCCAATGCAGATTGTAGAATCGACTTGGGTTACTGACCATAGAGAATCTTTATTAGTTTAAAATTCCCGCATGACGGCAATAAATAGTTTATATCATATATATTAATATAATCAAAACAAAAACCTTTTCTTTCTCTCAAAGAATCCATCCACATATAATATGTTAATAATTTCCTTTGAGAAGGGTGGTTGTAGATCTGGtccctatagcctggtcccattGCAGATTGTGCTGTAATATACCAAACTGCATTTAGCATTACAacatacagcacaaacagatttggGACAAGGCTCCAAACCCTTCCTCCTGCCACCCAAACACATTACTAGTAGTTCCCAAAACTCAAATGGCTTGTTCCCTTGGTTAAAAGCAATACAACCCTGTCAAACAAGCCCAAGCCTCGAGAAACACAagattcatcccaaatggcacccta
>TU1755008
CCTGGTTTCAGTTTATTATTTTATTCTTTCACTGCACAAAGAGCTGCTGTCAGTGTTTAACCTGTTGTAATTGCAATAAATCTTATCAGCATTTTTTGAACTTGTTTGTGTTCCTTTGTAGATGTAAAAGATCTACTAAAAAACTGATGAGTAGTTTCTGAAAAACAGGATACATTTTAAAATAGATACCCTTCTTCACAATACAGTTCTTGTTAGGTGCCTTTATAGATTAAGAAGCAGTAAAAGCATAGGCAAACATTTCTATAACACAATTTGTTAATATAATTTTATAGTTGATTACAGTGGGATTACAGCAAAATAAATTACTTTTTAAATGAATCGCACTAAATTGCCTCATTGGCAACGTAGTGTTATCGGAATTCTTTAAGGGACATTGGTGTAATAAAAGCTGCAACATACAAATTGCATGCTTACCCAAGGTCTTGCTCCCTTCAAGTTTGGAGAGGACAATTGCATTTTTAATGCTTGGTAATCACATGCAATGTTCCAAATTGCTCTCATTTTGAGGGAAACTTACAGAAGTGCTTGGAAGGCATTGGCCGGGAAAAAGGTTAGTTTATATTACAATACAGTGCACAGGGACAACTTGGGTTGGGGAACTTTAGGCTATACCATTGGTGGACGCCATTTTCTACTTCACATTAATTTTTCGTCTACATATTAGTCTCCATGTGCAACGGTATCTTCCATTGCGCAAACTAAAGTACCTCTCACTCCTTGAGATTCAGATAGGCACACTTGCAGCAACAAAGCTGTCCTAGTTAAATTGGGGTCAAGCTGAATTCCCACTAATGACCAATTTATGAAATTAAGAATTCCTATCATCAGGTTGCAACATTTATAACCCATTGTTACATAGGACCTAGGTAACATACCTTTTTGGGGAGATAATGCAATGCATGTATTCCCTACCTTCAATAATTTGTCATAGCGAATCGCAGTTGTCTGTGGGATTGCCATGACAAAACAAGCATAAATAACCTTTAGATGTAAGGTACCTAGTCTCTAGACAGACTGGTTGCCTCCCACAATGTTACAAATGTTTTGCCCTAGGTCTGGGATTTCCAAGAGTATTAAGTACCCATAACATTTAAGTTGTACACATATTAAGCAATTGGTGGAGGTGAAGTAGCACTTGCATTAATTTACAAACATTACAGAATACAACTAACAAAATAGACCTTTGAGATGTTGACAATGAGCAATTGAAAAGGTTGTCAGCATACCACAGTAAGTACGTTTTATATGGGTAAAGAAATTGACCATCACCTGGTTTGGGGATAAAAAGATAATACACCCTAAAATTTAAAGATCTATTATTGTTTGGGAGATTTCACAATTTTGCTGAGTGTGGAACTTACTTGAGGGGCTGCTGGTCATTAAATTGCCTTCGATAAAACTCCCAAACATGTATTTGTGCGTATGATGTCCAACACAAAGACCTATTATTGTGAATCTGAAATGTAATTTTAATAGATGGTTAAAATAAGTCATTTGTGTATGGCTAATTACTGCAGTACTAAGTTTTGTTTGGAAGATTTCACAATTGAGTGCTGAATTTACTTGAGGGGTTGCTGGTCAATAAACTGCCTTCAAAGAAACTCCCAAATGTACGCATTTGTGCATAAATGATGAAAACGTGTTTTGCTGAAGATCTAAATCCAATGCAGATTGTAGAATCGACTTGGGTTACTGACCATAGAGAATCTTTATTAGTTTAAAATTCCCGCATGACGGCAATAAATAGTTTATATCATATATATTAATATAATCAAAACAAAAACCTTTTCTTTCTCTCAAAGAATCCATCCACATATAATATGTTAATAATTTCCTTTGAGAAGGGTGGTTGTAGATCTGGtccctatagcctggtcccattGCAGATTGTGCTGTAATATACCAAACTGCATTTAGCATTACAacatacagcacaaacagatttggGACAAGGCTCCAAACCCTTCCTCCTGCCACCCAAACACATTACTAGTAGTTCCCAAAACTCAAATGGCTTGTTCCCTTGGTTAAAAGCAATACAACCCTGTCAAACACAGGTGCCATCAAGCCCAAGCCTCGAGAAACACAagtttcatcccaaatggcaccctattctagctataatgcactacttttgaccagagccctatgggccctggtaaaaaagtAGAGCACTGTAAAGGGAAGGGTCCCATTCGGGACTCATCCACAGTGATAGTGTGAAGGCAGAATCAACCACAGTGATCTCAATCACTAACCAACTGCCACTAACCACAGACACTTTGATAAGTGTACATATATATCTGTATAATGTTATTCTACATAAAACAAAACAGTAGGGTATGAGCGGTGATGAGGACGCTAGAAGGACTCTGGTTGGTGCgttggagatgggggtgtgtctGTGGGAGTGGCCACTCCCACTATCCCCTGTCCATCAGGACTGAGAAGACCCAGCAGGTCCTCGTCCATCTCCTCCAGTTCACTTTGGTCCAGAAGCTCAAAGTCCTCATCCTCGGTCGGTACAAACATGTCATCCGGCATCTCCTCAGCACTCCTCTCCTCGGTCTCCACAGCGACCTCATCCTGGTCCTTTTCTGCCTCGGCGACATGGGGACTTTCCAGGGTACTAGGGGGCGTGTCGGTGGGCAGGAAATCTGCGATTGAGGGGACCTTGCTGTCCTCGGTGGAGCGTAGCATGGCCGACAGAGTGTTCTGCACCACTGTGGAGATTGCCGTGTTCACAATCTCCTCACTCAGGGCTTCCAGTGACTGCCTCGGGGCCTGGGTCTCCACTTCCCCCCCATGCACCACCTCCTCCGCTGTCCCAGCACTCAGCAGTGGTCCCTGGTCCCCACCTGGTGGCCTTCCACGTCCGTTGAAGTGTGTGTTGACAAAGTGGAGTGGGGAGGCTGTGCTCGATGGGAAACTCGTCAACCGAGGGGAATTCAGATCGGTCCCTTAAGAAGGCCTCCTCTGGGTCATTGTGCACACTCTGC

Function

NR:

description
protein FAM134A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571508.2 False 1624 mRNA 0.52 4 27943373 27947177
TU1755023 False 320 lncRNA 0.46 2 27943362 27943988
TU1755007 False 2121 lncRNA 0.36 2 27947078 27958807
TU1755008 True 3020 TUCP 0.42 2 27947078 27950222

Neighbor

gene id symbol gene type direction distance location
LOC118941047 mdh1b coding upstream 2575 27938032 ~ 27940798 (+)
si:dkey-1h24.6 LOC106574316 coding upstream 12035 27925782 ~ 27931338 (+)
LOC110495952 NA coding upstream 111468 27829955 ~ 27843859 (+)
alg11 alg11 coding upstream 114031 27820568 ~ 27829342 (+)
LOC110495947 LOC106575089 coding upstream 193313 27629477 ~ 27750060 (+)
LOC110496786 NA coding downstream 527172 28474349 ~ 28479668 (+)
LOC110495966 LOC106575106 coding downstream 574303 28521480 ~ 28595208 (+)
LOC110496787 LOC106575108 coding downstream 686634 28633811 ~ 28644214 (+)
LOC110495968 LOC106574333 coding downstream 699404 28646581 ~ 28672693 (+)
LOC110495972 NA coding downstream 785412 28732589 ~ 28735229 (+)
G1533099 NA non-coding upstream 19498 27921605 ~ 27923875 (+)
G1533033 NA non-coding upstream 92322 27850464 ~ 27851051 (+)
G1532920 NA non-coding upstream 132482 27805255 ~ 27810891 (+)
G1533122 NA non-coding downstream 30940 27978117 ~ 27981282 (+)
G1533123 NA non-coding downstream 32805 27979982 ~ 27980618 (+)
G1533060 LOC106574321 non-coding downstream 38294 27985471 ~ 27988152 (+)
G1533062 NA non-coding downstream 48325 27995502 ~ 28053987 (+)
G1533155 NA non-coding downstream 81779 28028956 ~ 28033896 (+)
G1532307 NA other upstream 1185696 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 1999695 25930184 ~ 25943678 (+)
G1530923 LOC106574292 other upstream 2103638 25838506 ~ 25840353 (+)
G1530785 NA other upstream 2372027 25566471 ~ 25571346 (+)
G1533121 LOC106574322 other downstream 27636 27974813 ~ 28038476 (+)
G1534488 LOC106574337 other downstream 856851 28804028 ~ 28804673 (+)
G1534495 NA other downstream 865652 28812829 ~ 28813103 (+)
G1536720 NA other downstream 2349954 30297131 ~ 30297346 (+)

Expression


Co-expression Network