LOC110495957 (LOC106574318)


Basic Information

Item Value
gene id LOC110495957
gene name LOC106574318
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27948778 ~ 27974405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952469.1
AATGATGTCTGCTGGTAGTTTGGTATGCCAAAGTTTACCCTACTTATCGAATAAACGAGAAACGTTTCTCTAAATACTCTACATACATTCTAAGTGCGCTATCTTTCAAATAACAGTAACTTACCTAGTTGACAGCTGTCAAATCTAGATAAGACGTGAGCGTTCGGATATAAATGTGCTTCTGTCTTCGACGTCCCTgcgtcctctcttcctcctgagTCTTTCCATTCTAGGGCTCATGCAGCTGGAGAGATGGAAGCATAAGTTACCTCTTACAACAGTTCAGTATCCTGAGGCCAACCCAATGGAAAGAGAGACCATGAATGTGCAACCCCGGCTCCTCAGTATTCCAGAGCTCAGCCACCACCTGGTGGAGAGCTACCTCTACTGCTGCCTCTTCGTCCAGGAGATGCTGCAGTACAAAAGGCAGAACCATGGAAAGTTCTGTGCCATGATGTGCTCTGGCTGTTCTGTGCTCGCCGTGGTGGGACACTACGTACCAGGAATCATGATATCCTATATCATCGCGCTGAGTGTGTTGGTGTGGCCTCTGGTGGTGTACCACGAGCTTATCCAACGGATGTACACAGGCCTGGAGCCCATTCTGATGAAACTGGACTACAGCATGAAGGGAGACACGCAGCACCGCAAGCACGATAAGAGGAaggtgaagaaggaggtggaggaaggggaTGAGCCCAGggctgagacagagagcgagagtgaggagGAGCTGTCCTGCTTTGCCCCCCTGGTGGATGCAAAGACCACAGCCCTGGCTATGGCCATCACCGACTCAGAGCTGTCTGACGAGGAAGCATCCATTTTGGAGAGTGGGGGGTTCTCCGTATCCAGAGCTACCACCCCACAGCTCACAGACGTCTCTGAAGACCCGGACCAGCAGAGTGTGCACAATGACCCAGAGGAGGCCTTCTTAAGGGACCGATCTGAATTCCCCTCGGTTGACGAGTTTCCCATCGAGCACAGCCTCCTCCACTTTCCGTTGCGGGGCCCCGGTCAGGGCCAAGGGGACGGGGCTACGGCTGGGGGAATACGGCCCTCGGAGGGGGGGGAGCCCATGAGCCCGGCCAGCCTCCTCATCCAGCACCTGGCCTCCCCACTCCACTTTGTCAACACACACTTCAACGGACGTGGAAGGCCACCAGGTGGGGACCAGGGACCACTGCTGAGTGCTGGGACAGCGGAGGAGGTGGTGCATGGGGGGGAAGTGGAGACCCAGGCCCCGAGGCAGTCACTGGAAGCCCTGAGTGAGGAGATTGTGAACACGGCAATCTCCACAGTGGTGCAGAACACTCTGTCGGCCATGCTACGCTCCACCGAGGACAGCAAGGTCCCCTCAATCGCAGATTTCCTGCCCACCGACACGCCCCCTAGTACCCTGGAAAGTCCCCATGTCGCCGAGGCAGAAAAGGACCAGGATGAGGTCGCTGTGGAGACCGAGGAGAGGAGTGCTGAGGAGATGCCGGATGACATGTTTGTACCGACCGAGGATGAGGACTTTGAGCTTCTGGACCAAAGTGAACTGGAGGAGATGGACGAGGACCTGCTGGGTCTTCTCAGTCCTGATGGACAGGGGATAGTGGGAGTGGCCACTCCCACagacacacccccatctccaacGCACCAACCAGAGTCCTTCTAGCGTCCTCATCACCGCTCATACCCTACTGTTTTGTTTTATGTAGAATAACATTATACAGATATATATGTACACTTATCAAAGTGTCTGTGGTTAGTGGCAGTTGGTTAGTGATTGAGATCACTGTGGTTGATTCTGCCTTCACACTATCACTGTGGATGAGTCCCGAATGGGACCCTTCCCTTTACAGTGCTCTacttttttaccagggcccatagggctctggtcaaaagtagtgcattatagctagaatagggtgccatttgggatgaaactTGTGTTTCTCGAGGCTTGGGCTTGATGGCACCTGTGTTTGACAGGGTTGTATTGCTTTTAACCAAGGGAACAAGCCATTTGAGTTTTGGGAACTACTAGTAATGTGTTTGGGTGGCAGGAGGAAGGGTTTGGAGCCTTGTCccaaatctgtttgtgctgtatgtTGTAATGCTAAATGCAGTTTGGTATATTACAGCACAATCTGCaatgggaccaggctatagggaCCAGATCTACAACCACCCTTCTCAAAGGAAATTATTAACATATTATATGTGGATGGATTCTTTGAGAGAAAGAAAAGGTTTTTGTTTTGATTATATTAATATATATGATATAAACTATTTATTGCCGTCATGCGGGAATTTTAAACTAATAAAGATTCTCTATGGTCAGTAACCCAAGTCGA
>XM_021571507.2
ttgtagCTGTAGTAACCACCAGTAACATCGGttcctacttttttttttaatccatgaCGGGCCTTCGCGGATCTATCCGCCTATCCATACCCCGTGATCaccaaaacaacacaacaaagTGGGGGAAAGATGGCGAGCGGAGAGGAGGCTAGATGCCCCTCTGTTTCTTCCGTACTCGAGGACCTGTTCCCTGCCGGAGGATCAGAGCAAGTATGCAGTGATGGGAACCCTGAGCTCGTGCAACTGCGGGAGCGTCTTCAAGGCTGGCTATCGCAATATGAGCCTTTGCTGTTATGGATGCAGAGGCTGCTTGTTTGGGAAAGGCCGCTCTACAGCATCTTTGTTGCTCTCACGCTGAACACCTTGTTCTGGCTTCTGTCTTCGACGTCCCTgcgtcctctcttcctcctgagTCTTTCCATTCTAGGGCTCATGCAGCTGGAGAGATGGAAGCATAAGTTACCTCTTACAACAGTTCAGTATCCTGAGGCCAACCCAATGGAAAGAGAGACCATGAATGTGCAACCCCGGCTCCTCAGTATTCCAGAGCTCAGCCACCACCTGGTGGAGAGCTACCTCTACTGCTGCCTCTTCGTCCAGGAGATGCTGCAGTACAAAAGGCAGAACCATGGAAAGTTCTGTGCCATGATGTGCTCTGGCTGTTCTGTGCTCGCCGTGGTGGGACACTACGTACCAGGAATCATGATATCCTATATCATCGCGCTGAGTGTGTTGGTGTGGCCTCTGGTGGTGTACCACGAGCTTATCCAACGGATGTACACAGGCCTGGAGCCCATTCTGATGAAACTGGACTACAGCATGAAGGGAGACACGCAGCACCGCAAGCACGATAAGAGGAaggtgaagaaggaggtggaggaaggggaTGAGCCCAGggctgagacagagagcgagagtgaggagGAGCTGTCCTGCTTTGCCCCCCTGGTGGATGCAAAGACCACAGCCCTGGCTATGGCCATCACCGACTCAGAGCTGTCTGACGAGGAAGCATCCATTTTGGAGAGTGGGGGGTTCTCCGTATCCAGAGCTACCACCCCACAGCTCACAGACGTCTCTGAAGACCCGGACCAGCAGAGTGTGCACAATGACCCAGAGGAGGCCTTCTTAAGGGACCGATCTGAATTCCCCTCGGTTGACGAGTTTCCCATCGAGCACAGCCTCCTCCACTTTCCGTTGCGGGGCCCCGGTCAGGGCCAAGGGGACGGGGCTACGGCTGGGGGAATACGGCCCTCGGAGGGGGGGGAGCCCATGAGCCCGGCCAGCCTCCTCATCCAGCACCTGGCCTCCCCACTCCACTTTGTCAACACACACTTCAACGGACGTGGAAGGCCACCAGGTGGGGACCAGGGACCACTGCTGAGTGCTGGGACAGCGGAGGAGGTGGTGCATGGGGGGGAAGTGGAGACCCAGGCCCCGAGGCAGTCACTGGAAGCCCTGAGTGAGGAGATTGTGAACACGGCAATCTCCACAGTGGTGCAGAACACTCTGTCGGCCATGCTACGCTCCACCGAGGACAGCAAGGTCCCCTCAATCGCAGATTTCCTGCCCACCGACACGCCCCCTAGTACCCTGGAAAGTCCCCATGTCGCCGAGGCAGAAAAGGACCAGGATGAGGTCGCTGTGGAGACCGAGGAGAGGAGTGCTGAGGAGATGCCGGATGACATGTTTGTACCGACCGAGGATGAGGACTTTGAGCTTCTGGACCAAAGTGAACTGGAGGAGATGGACGAGGACCTGCTGGGTCTTCTCAGTCCTGATGGACAGGGGATAGTGGGAGTGGCCACTCCCACagacacacccccatctccaacGCACCAACCAGAGTCCTTCTAGCGTCCTCATCACCGCTCATACCCTACTGTTTTGTTTTATGTAGAATAACATTATACAGATATATATGTACACTTATCAAAGTGTCTGTGGTTAGTGGCAGTTGGTTAGTGATTGAGATCACTGTGGTTGATTCTGCCTTCACACTATCACTGTGGATGAGTCCCGAATGGGACCCTTCCCTTTACAGTGCTCTacttttttaccagggcccatagggctctggtcaaaagtagtgcattatagctagaatagggtgccatttgggatgaaactTGTGTTTCTCGAGGCTTGGGCTTGATGGCACCTGTGTTTGACAGGGTTGTATTGCTTTTAACCAAGGGAACAAGCCATTTGAGTTTTGGGAACTACTAGTAATGTGTTTGGGTGGCAGGAGGAAGGGTTTGGAGCCTTGTCccaaatctgtttgtgctgtatgtTGTAATGCTAAATGCAGTTTGGTATATTACAGCACAATCTGCaatgggaccaggctatagggaCCAGATCTACAACCACCCTTCTCAAAGGAAATTATTAACATATTATATGTGGATGGATTCTTTGAGAGAAAGAAAAGGTTTTTGTTTTGATTATATTAATATATATGATATAAACTATTTATTGCCGTCATGCGGGAATTTTAAACTAATAAAGATTCTCTATGGTCAGTAACCCAAGTCGA

Function

NR:

description
protein FAM134A-like isoform X1

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952469.1 False 2345 mRNA 0.51 9 27948778 27973854
XM_021571507.2 True 2539 mRNA 0.52 9 27948778 27974405

Neighbor

gene id symbol gene type direction distance location
LOC110496785 LOC106574363 coding downstream 34171 27839770 ~ 27914607 (-)
cpb2 cpb2 coding downstream 128957 27808174 ~ 27819821 (-)
LOC110495948 LOC106574314 coding downstream 149800 27754174 ~ 27798978 (-)
LOC110495945 LOC106574379 coding downstream 341344 27573531 ~ 27607434 (-)
LOC118941127 NA coding downstream 422331 27523859 ~ 27526447 (-)
prkag3a LOC106575098 coding upstream 403 27974808 ~ 27982705 (-)
LOC110495959 LOC106574321 coding upstream 11061 27985466 ~ 27995296 (-)
LOC110495955 LOC106574324 coding upstream 20976 27995381 ~ 28092196 (-)
LOC110495961 LOC106574325 coding upstream 150194 28124599 ~ 28199758 (-)
LOC110495963 LOC106574327 coding upstream 267089 28241494 ~ 28368147 (-)
G1533860 NA non-coding downstream 2821 27945669 ~ 27945957 (-)
G1533845 NA non-coding downstream 22098 27926292 ~ 27926680 (-)
G1533783 NA non-coding downstream 115741 27830973 ~ 27833037 (-)
G1533722 NA non-coding downstream 235786 27712586 ~ 27712992 (-)
G1533686 NA non-coding downstream 289501 27658996 ~ 27659277 (-)
G1534021 NA non-coding upstream 244769 28219174 ~ 28226302 (-)
G1534036 NA non-coding upstream 266098 28240503 ~ 28240728 (-)
G1534150 NA non-coding upstream 370631 28345036 ~ 28345319 (-)
G1533378 NA other downstream 759229 27187622 ~ 27189549 (-)
G1531236 NA other downstream 2239904 25696539 ~ 25708874 (-)
LOC110495915 NA other downstream 2375107 25571910 ~ 25574981 (-)
G1536703 NA other upstream 2309967 30284372 ~ 30284762 (-)
G1537022 NA other upstream 2545487 30519892 ~ 30525373 (-)
G1537091 NA other upstream 2628311 30602716 ~ 30603392 (-)

Expression


Co-expression Network