LOC110495959 (LOC106574321)


Basic Information

Item Value
gene id LOC110495959
gene name LOC106574321
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27985466 ~ 27995296 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571510.2
CTGTTCCCGCCCTCCTGTCTTGTCAGCCATCACGACGGGGGTTACTGCTGTGCTAGCTAGCCTGAGTAAAACCAGGCGCCGTTTTATAGCTATTCAGCTAGATTTTCTCTTTCTTCTATTTGGCTAATGTTGGATAGACATCATGGATTTCAACGAATTGTTTAGTGAACGAACATTACAATTTTCTGACTTTCAGGAGTTTACGTTTCTTCCTGGACATCAGAAACTGTCTGAGAGAGTGCGGAAGCGATTATACTATGGCCTGGACCAAGACGGCTCTCTAGATAACCTTTCCTGTCCTGTTACAGATATTGCTGTGGAACTCCTTCAGAAATCTGCCCCTAGCCCAATTCGAAAACTGCACAAGAAATATGCTGCTCATGTCGCGAGGGAGGCGTGCATCTCTCCATGTGCCATGATGCTGGCCCTGGTCTACATCGAAAGGCTACGACACAGGAACCCCGAATACCTGCAAAAGATCTCCTCCTCTGACCTCTTCCTTATCTCCATGATGGTTGCCAGCAAATATTTGTACGACgaaggggaggatgaggaggtgtTCAACGACGAGTGGGGGGCTGCTGGGAAACTGGACGTCCAGACTGTCAACACTCTGGAGATGAATTTCCTCGATGCTATTGAGTGGAGCCTCTTCACTGAGCCAGGGGACTACTTTGGCATACTGAATCAACTAGAAACCAGTATTGCAGAGAACCAGGGGATGAAGCGAGGCTGGTTCACCTACACTGACCTCTGTGTGCTTCTGGAGCAGGCGGCGTGGCGACAAGCACTGACGGCCATCTACCTGCACTTTGCCAAGGTGACCTGCATGCTGGGGCTGGTGTATCTGACCAGTGTCGCGGGCCTTATCGCCACCAGCCTCCCCAGGAGCAGCCAGCCCCTGTCCCCAGTCAGCCAAGTCCACCTGCCTAGCTCCAGcctctctccaccaccaccactaggccTGCTCCCAGTCCCAGAGACCCCAAGTCCAGCATCCGACCTCCCTCGCTGCTGCGTCTTGGGCAACGACAGTCACAAACGCAGACCTGGCATTCTCCACACCCACGACAACCACGGCTCGCCAACCACCTCCCAGACCTCTATACTGTGTCTATGGGGCTCTCTCCTCACTTCCCTAAGCCACACTGACCCACACCCCCAGCCTGACACTGAACCAGCCTTGTCCGCCTCCTCTCTGCACTACCCCGGCTGCCCAGTTACAGTGGGGAGCCTCCCTCTTGGCTCCATCCAGTGCGGCCCATCGAACACCTCTGCTCCACTACTTGAGCCTGGAACCCCTGGTCACCCCTCAGCACCGTGGCTGGcccctgtccccctcctctaCGGAGCCATCCCAATGCTCCTGGACTCCCGTCTGACTGGCATGGCAACCCTCCGTGTCGGACCCTGCTGCCCACAATTCATGCTGCCCATCGAGAAAGCCCAATCTCTCCTCATGCCCAGCTAGACACAGACGGACAAAACAAGCCACAATCGTTACCCTGCAATGACTATGACGCCGGACTCCAAATTAAACCAACCGATTTTTCAGAATGCGTCCGTTGCAGTGAAAGGATTGATTTTGTTTTGTATGTGCATTGTTTTGTTGCATATACTGTCTACATTTGAGATAAGGCCCCCTAAAGGTGAGTAGCACATTTTGTACAGTGGTTTGCCAGCTGAATTGGTGTAAATAAGTGAGATGAACTCATAACAGCGTGAGATCTGAGTTCTGTGCTCAGACCCTCGTATCTTTTCTAACGTAGATTTTTCAAAGGAGGTTGGATCACAGCGCTTTACAATGGGTGTTTCCAAAGTCAAGGAGGTGTTTGAGGTCTAGAAGGTGTGTACATGGCAAACTAATCTTTCTTgtttggtttaaaaaaatacacaaaaatatGTCTATGCATGGCTACCATACCCACACAGCGTTTGTTACTACCTAGTCTTTGGCCTGGGTACCAGATTTGTTTGTGTCATCATTCCACTCACACtccatgtttggcatgacaaagTGGCATGATGGaagaaacagactggtacccaggctacctACTCTTTACCTATGCTTGAAAATGGGGGCTTGTGGGAGTTGGGCTAAGTCAAGTTTTTAGTTGGAAGAGTTAAGTTTTGATGTGACATCATAGCTATTTGAGAATGTGTTGAGAAAGTAAGAAAGTCGAGAAAGTCTCCACAagtcagtactgtactgtagcgcTTTAAGAAGGGAGGCaatttagcctggtcccagatctgtttgtgctcttgccaactctaTTGCTGTCCTTGTCAAGCCAAACATTGCATGACAATGAGTGGGAAGGAGTTGGattgatggcacaaacagacttgCACTCAAGCTAGAGACAACTAGCCTACATTTGATTTGCCATGGAGTTTTTGGGTCATTATTCTCTCATTTACTGTagttattttaaaaaaatgtcaacATATTTTTGCACAGATGGCTACTGGTCCCTGCACTGAACAATAGTAGAGATGTAATGCTTTTTTATTCCAGTGAAAAAACAGTAAACATTCAATTCATATCTCGGTTTGGCTGCCCCTCaagtcgtgttcattagggcacatcaTAGCGAAATGCTTTACACCACTTCGCAATAGCAAACGAAAATAgaagtttcttattggacaaggtcagagagccccccccccccccccctttttgggGACATTTGTTTCATTTCctgcctactgaacatgaccctaaACTCAGATAGCACTGGGGGACAGATGGAACTCTTAACTATTTATTTTACCATGATAGAATGCAGTGGCTATCTCTAATTTAATGTTTGTACAACAGAATGCCACGCAACTGAAATAGGTCATAACCAGTTTACTGTTTTGATGTTTTTTAAATAAGAGTTTTGAATATGATTGAAAATGTATCTAATGAATGCGATTTTCATCCAATTACCCTTTCCATGGAAACAGTTGTATTGTGCAAAACATCACTTTTTTTAAGTAGAAATGTCGTTTTTTTAAATTTATGCAATTAATTAGTATCCCTCTTTAACATACCAATTTGGTTGGGGAGACCTGACAACATTAAAAACCACTCAATCACTCGCATATAATTTGTCTTCTCCACCCGCTCAAAATTGGAAAATGTCTTCTTTCTCCATAGATTTAGTTGAATGGGTATGTCCATTATTGAATGGGGATGTAAATTCTGGTAATACTATTTCAGTCTCTCATCCCTGAAAAACAGTTGGCTCTTCTCATATTCTTCTACTCAAGATAGAAGGTTCTTGCTAGGGAATTTGATATTTGTACATATGACTTGGTTTTACATTGACACCTTTCTTACAAAGCCAGGAGGCACTGTGGTCCCTAGGACATTAACTCATGAAGTTTGGCTTTTGTTGAATTGCTGAAAACATCTAAATTAAACATTTTTCAAATCAGACTTAGATTTTGAAGCACAATATCCTTACATTTTGTAAACAATGTGTAGAAatctgtaaaaaataataataaaatgctTGACTCTTAACCACA

Function

NR:

description
protein CNPPD1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571510.2 True 3528 mRNA 0.45 8 27985466 27995296

Neighbor

gene id symbol gene type direction distance location
prkag3a LOC106575098 coding downstream 2761 27974808 ~ 27982705 (-)
LOC110495957 LOC106574318 coding downstream 11061 27948778 ~ 27974405 (-)
LOC110496785 LOC106574363 coding downstream 70859 27839770 ~ 27914607 (-)
cpb2 cpb2 coding downstream 165645 27808174 ~ 27819821 (-)
LOC110495948 LOC106574314 coding downstream 186488 27754174 ~ 27798978 (-)
LOC110495955 LOC106574324 coding upstream 85 27995381 ~ 28092196 (-)
LOC110495961 LOC106574325 coding upstream 129303 28124599 ~ 28199758 (-)
LOC110495963 LOC106574327 coding upstream 246198 28241494 ~ 28368147 (-)
LOC110495969 LOC106574334 coding upstream 677533 28672829 ~ 28675992 (-)
LOC110495970 app coding upstream 693826 28689122 ~ 28731312 (-)
G1533860 NA non-coding downstream 39509 27945669 ~ 27945957 (-)
G1533845 NA non-coding downstream 58786 27926292 ~ 27926680 (-)
G1533783 NA non-coding downstream 152429 27830973 ~ 27833037 (-)
G1533722 NA non-coding downstream 272474 27712586 ~ 27712992 (-)
G1533686 NA non-coding downstream 326189 27658996 ~ 27659277 (-)
G1534021 NA non-coding upstream 223878 28219174 ~ 28226302 (-)
G1534036 NA non-coding upstream 245207 28240503 ~ 28240728 (-)
G1534150 NA non-coding upstream 349740 28345036 ~ 28345319 (-)
G1533378 NA other downstream 795917 27187622 ~ 27189549 (-)
G1531236 NA other downstream 2276592 25696539 ~ 25708874 (-)
LOC110495915 NA other downstream 2411795 25571910 ~ 25574981 (-)
G1536703 NA other upstream 2289076 30284372 ~ 30284762 (-)
G1537022 NA other upstream 2524596 30519892 ~ 30525373 (-)
G1537091 NA other upstream 2607420 30602716 ~ 30603392 (-)

Expression


Co-expression Network