LOC110495963 (LOC106574327)


Basic Information

Item Value
gene id LOC110495963
gene name LOC106574327
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28241494 ~ 28368147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110495963
ATAGCAGAACTCTTAATGGCTGAGATGGAGGAATCGAGGGGCGATGCACAATAACAATGGAGACATGGTAACATGTGGCCCATTGTGGATAACAGCTTAGCGGGCCTAATAATTGGGCCACTATTTGTCAATCTGTGCACGGATcattgtgtgttgtggtggtgttgagatgtgtgtttagGAGAGGAGAAGCAGGGGTTGGACCAAGGGTCCTGGCTGGCCAAGGGCGTAGGGATCGGGGAGGGGTAAGTGGGAGGCCCCCCTGTATGTGTCATTACGAGGGGGTTGAGACAATGGAGGAGGTTGGTGACACAATGAAAGTGACTAGGCAGAAGGTCgtcatttttttcccccattttaTTTTTCTCGTCCGTCAACTCTCTGATTCCgccgtttttatttattttataaatttTTTCCTCTTTCCTTTACATTTCACTCCGGAGCTGCTCTTGTGGTGCTAGCATGCATGACTTAAAATGAGCCTCTCTCTCCTGAGCGATATGGAAGGAGAGCAAAACAAAGAAGAACAGATCGAGTtgacggaggagagagggacactCACGGATGAGgaTGACAGCCATCCACTGACCCACAGAGGAGAACCCGAAGACCGACTGAGGCTTGACATCCCCACCACAGCCAAGATGAGCCGGGTCACACTCAgCCCCCTGACCGAGATAGTGGGGAGCTCTCTGGAGAACAGGGACCGCTGGGGATCCATGTCGTCCCCTACTGCTCATTGCTGAGTGGACAGTGAggaacgcacacacactcactttcacTCGCTCACTGTAACTCACTCACTTTCACGCACTCTCTTACACATTCTCTACCCATGCATTGaaggctgtttgtgtgtgtgtgtgtgttcagactgtGTTTATCATCCGTTCTCAGGACCCTGGGCCTGCACATTAAAAGTATCGAGGCGAACAGTCGCTCCATGAGAGAGGGCCTTTTCCGGGAGGATGAGTGCATCGTTCAGATTAGCGGCACCGAGCTAATGGACAAGACATTTGCCCAGTCCCAGGAAGTGTTCCGTCAGGCCATGTGTTCCCCTCTGGTGCGCCTGGAGATCCTGCCGCTGGCTAACAAGCAGCGATACGAGAAACGCCTCATCGGGCAGCTCTTCACCGACAGTCACGACTCCGTCTCCAAAGCCATGAGCCCCCTCGTGATCCACCAAAAAATGGACGCTAAACCAGAAGTGAAACCAGAAACCGTGAAACCAGAGCAGATCAGTCCCAAACTGGAGCCGAGACGTCCAGAGCTCTGTGTCCTCCGCTCCAAGACCCCCGATCTGCCAGCCTCTCTCACCCTGCTATGGGAGCACCAGACTGGGCACGTCCCAGAGGAGATGCCCCTCAGTGTGTCCCCAGCCCCGGTGGTCAGATATCGGGATGGGGCCTCCCCCACGGCGGTGGGGGTCAGTGAGAGCCCCCTGTCCCGGGGAAAGAGTCCCACTGGGCTCCCTAACCTGGCcaacctgaccaaccagaaggGAGGCCGGAAGCTGAAGATTGACCTGAGGAAAGGTACCGAGGGGCTGGGTTTCACCGTGGGGACTCGACAGTCCATGGCCCGGGGCCCATCCTGATCAAGAGCATCCTTGCCCGTGGCGCCGCCATCTAAGATGGCCGCCTGCAGCCTGGCGACCGCATCCTGGAGGTGAACGGTGTAGACCTGATGGATCGAACTCAGGAGGAGCTGGTGGCCATGCTGCGCAGCACCAAGCAGGGGGAGTGTGTCTCTGTGGTTGTGGCCAGACAAGAGGAGATCTTCCTACCCAGAGAGCTAaAACGGGAGGAGGCTAGCCCCatggtgctggaggatgggcGGGAGCAGCTGATGTTCGAGGTGCTCTTGAACGACACTGGCTCGGCCGGCCTGGGCATCAGCCTCAAGGGCAACAAGTCCCGGGAGAAGGACGAGGACCTGGGCATCTTCATCAAGTCCATCATTCGCGGAGGGGCCGCCTTCAAGCTGATTGCAGTGAACGGCGAGGAGCTGTTGGACCTCTCCAACCACGTCGCCATGGAGACCCTACGCCACTCCATGTCCTGGGAGGGCAATGCCCGTGGCACCATCCAATTGGTGCTCCTCCGCGCCGCCCCCTCATCTGGCTCCGCCCACAGCGCCAACGCACAGGAGAGCCAGGAGGCGGCTAGCCACCAGATCCCAGACGGCCCCTCCGGACCCCCGGCTCTAGCTGCAGCCCTGGAGTCCCACCACCACAGCAACGGTCCCAGCCCTCAGCCGTCCATGGTCTCAGCTTTGGAGCTCCTCCCACTAATGGTGGCTACGCCCATCACGAGGAAGAGGAGGCGATAGAGGAGGATTTCCCCTCACCACCTTCGCCTGGCTCCGTGGAGGAGACGAACGCTAAACTCCCATGCACAACACAACCTCACCGGAGTGAGCGGAACAAGACTCCCTATTCTCCTGAGGGTCCCCTtcacccagacacacagagagcacagCAACCCAGGCAGACGGACTACCCTCAGACAAGGAACTCTTAAGAGCACGGACCTGGTGGCTGATGAGAGCAACATGAGATCCCTGGCAGAGCAGAGACCAGGTGACCTGTCAGAGCAGAGCTCCGGCCGAGACACGCCCGTCAGTGGCTCATCCCGCCAGGACCAGATTGAATCAGGGgcagggaagaagaagaagaagaccaaagggaagaagaagaagaaagaagaaaagCAAAGAAAAAGTGAAGGAAAACTGCGAATTCTGAGGACCAGGAGAAGGCCAAGAAGAAAGGATTCGGCCTCTTAAGGAGAGTGGATCCGAATGACTACCCCACCCAGTCTAGGACAGCACCTGGTTACCCCGGCCGAGGCAACTACTACCCCCCTAAAGAGGCCCAGCCCCGCTCCTCCAGCCAGGTGGACCCCAGGTACTACCCATCCTCGCCCCACCGGGCTGACCAGCACCAGGATGTGCCCCCCTCACCAGGCACCCGTGCCCCCCACTACGAGACAGTGGGCAGGGACAGTTACCATGACGCCAGCCCTGAGCGCTACGGCGGCGGCTACAGGGACGGCAGGCAGCCAGACCCAGGCCAGAAGAACAGCATGATTGGAGCGGTGTAGGTGCCATAGCTAGATGGACTCAGACTGGGATTGCAGAATTCTGGTAACATTCCCCAGATTTTCCGGGAAAATCCCAGTTGGAAGATTCCCGAGTTTCTACCATATTTCTTCTTGATTCCTgaaatcttccaaccaggatttttgGAAAACCTTGGAATTTGGAAAGATTACTGATTACTCCAACCCTAAATCAGACCCACTCATTGCTTCTCTACAGCCCCCATGTCTGAAAACATCCTCGCCCCCCTACCTCATTTGGTGTCTGCAAATCTGAAGGAATCAGATTGGTGTAAATAATACGGCTCCAACTAGACGTCCAATGGGCGTGAGCCATACTGCTTACACCTATCCAGGTCTTTGAGATctacaaacatcaaagcagtagGGGaagggttgcgtcccaaatggcactttattccctttctagtgcacttcttttgaccaggtcaaaagtagtgcactatgtagggaataggctgccatttggaagGGGTGGTTTATGGACCAGGCCATCATCAGAACACTCCTCTCAGCTGCTGACATGTTTTAGAAGCAGTAAAGGTCTATATGTgtaatgtatgtacagtatgtatagagACATGTTTAGAAATGTGTGTTTCTTCATGCATGTGTGGGGATGTAAATTATGTATTTTTGATTCACAGGCGTCCAGAATGACTGGCGGTAGACATAATGTACAGATTGGAAAGAGACTTTTAATTGAATACCAGCCAAACTCTTGCAGGGTTAAAACCAGGCCCCTCCCTTTCTGGAACAACAGTGAGAGGCCAGGGATGGTGAAGTTAGGGTTTCGactcaaaaggcaccctattcccgagaTAACGGAAGACAACGGGACAAGAAGTTGACACTGGACAGGAAGTTGATCCTAAGAAACAAGGTCAGAGGAACAGGAAGTAGGGAACAGGAAATGAAGTCCACATCAAAGCATTTTTGCCCGCCTGCCGTGTCCCTTCCATCCGCCTTTTTAGATGTGGACTTTCTGCTGCCCATAATGTTGCTTTTTTAAGTAAAgtataatgtgtgttgtgtttatgATTTAAACGGCTGTGTCAAATTTAAGTTATGTTATCATAAAGACACTGTTGAACAAATTAAAATGTATGCTCTGTGTTGACTAACTATATTTATTCATCACATGGGTtgtgtcccgaatggcaccctattccctatataccgcACTTTTGAGCAGGACCCTAATGGGCTGTGTCCATAGCCTTATGaaccctggtcagaagtagtgcaccacatagggaacacggtgccatttggggcacagcCACAGTCTCCCAGTGATGAAGGCCTAAGAGAGACACTTAAACATGTTACTCATATGCACCGGGATTATTATCCTTTCTCGCCATTGATCTCATTTCaaggcggttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagtaaaataaaggtaaaataaattaaagAAATGTTCTCTTGTGTGATGGTAAAAAATCACAACGCTGACCATATCATGTCATATTGTACGTTGATGACGATACATTTTAACCTTTGTTTGTAAATGCATGTTTTTATATTATGCCGTGCATGAAATAGACATTGTAAATGATCATATACAATGTGCCAAGATGAATTAATTTATTGTTCACCAATTTAGCTGTCTCATTTTACAGGATGATGAAATTGCAAAGTTATGCAAATTGTCCTGATTATGAGTCACCAACATGATGACTCATCTCGCCCAAATGATTCATTAAGATTTTCAACCCAGTTTAGCTTTCCCATTTGAGATAAATTAGCCCTCTACGATAACAGAGAGGCCcaggctgcttcccaaatggcaccctattccctacattgtgccataattttgaccagggcccattggaccagctcatagggctctagtcaaagtattgcactatttagggaatagggtgcaatttgggacgtagACCCAGTCTTACTGCTGATAAAGACTGAATCACCCTCAACAATTAAGACTGAGGAGATCTCTGTGCTGAAGTGATTACCTCCCAATTTGCTCCCACGGAAAAGGAAGATCTGGCTGATTGGTGGAATTAGAGGTTGAAATTAGGATAATTAGAATCTGTTGAGAGCTCATTTTATCAGTTAGTGTTTAATTACCGCCGAGGCCAGTCAGTGTGTTTCAgatttcatcccaaatggcaccctattttctacatggtgcattgcttttgaccagggccagtaGGGCATATTGGGGCCGATTCTAACCCGAGTTTAAGCGTGCGTAAATGGAACGTAATTCCCTTTAATGCACTTCTCTATGCgcattctgaccttgaacttaagcatgagaatagcatgctgTTCACACGCTATTCATTTTGGGTGGAGATCTAAGAAATAAAGGTGTGTTTGAGGTGCGTCTACAGATGTATTCTGCCTTGACGCACGAGGAGAACATGAATAACATATGTATTGTGGCCCATTTTCCTCAGTGAAGTAGGCTATAAATAGCTATGCAGTTATTCAAAAATTGTATTGTGTGCCCTCATAATGCACAGTATGCAATTTGGATTACCAAACTATAGGTTTATGTAGGGCTGAATCTGCCGAGTTGATGTATGCgctttaaaatgttttaattatataatatatataattatataatgttaaatattaaccactatcaggAGCCACCGTCAGTAATACCCACAGACATTtatacactgaataaaaatataaacgcaacatgt
>TU1756202
GCCTTTTCCGGGAGGATGAGTGCATCGTTCAGATTAGCGGCACCGAGCTAATGGACAAGACATTTGCCCAGTCCCAGGAAGTGTTCCGTCAGGCCATGTGTTCCCCTCTGGTGCGCCTGGAGATCCTGCCGCTGGCTAACAAGCAGCGATACGAGAAACGCCTCATCGGGCAGCTCTTCACCGACAGTCACGACTCCGTCTCCAAAGCCATGAGCCCCCTCGTGATCCACCAAAAAATGGACGCTAAACCAGAAGTGAAACCAGAAACCGTGAAACCAGAGCAGATCAGTCCCAAACTGGAGCCGAGACGTCCAGAGCTCTGTGTCCTCCGCTCCAAGACCCCCGATCTGCCAG

Function

NR:

description
PREDICTED: partitioning defective 3 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110495963 False 5877 mRNA 0.57 14 28241494 28368147
TU1756202 True 354 TUCP 0.57 2 28351378 28352618

Neighbor

gene id symbol gene type direction distance location
LOC110495961 LOC106574325 coding downstream 41736 28124599 ~ 28199758 (-)
LOC110495955 LOC106574324 coding downstream 149298 27995381 ~ 28092196 (-)
LOC110495959 LOC106574321 coding downstream 246198 27985466 ~ 27995296 (-)
prkag3a LOC106575098 coding downstream 258789 27974808 ~ 27982705 (-)
LOC110495957 LOC106574318 coding downstream 267089 27948778 ~ 27974405 (-)
LOC110495969 LOC106574334 coding upstream 304682 28672829 ~ 28675992 (-)
LOC110495970 app coding upstream 320975 28689122 ~ 28731312 (-)
LOC110495971 cyyr1 coding upstream 370871 28739018 ~ 28758685 (-)
LOC110495973 LOC106574336 coding upstream 392525 28760672 ~ 28768063 (-)
LOC110495974 LOC106574337 coding upstream 403203 28771350 ~ 28805355 (-)
G1534036 NA non-coding downstream 766 28240503 ~ 28240728 (-)
G1534021 NA non-coding downstream 15192 28219174 ~ 28226302 (-)
G1533860 NA non-coding downstream 295537 27945669 ~ 27945957 (-)
G1534174 NA non-coding upstream 1948 28370095 ~ 28370391 (-)
G1534184 NA non-coding upstream 9520 28377667 ~ 28378167 (-)
G1534193 NA non-coding upstream 16967 28385114 ~ 28385394 (-)
G1534198 NA non-coding upstream 19244 28387391 ~ 28387887 (-)
G1534205 NA non-coding upstream 26582 28394729 ~ 28395000 (-)
LOC110496785 LOC106574363 other downstream 326974 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 442881 27754174 ~ 27798978 (-)
G1533378 NA other downstream 1051945 27187622 ~ 27189549 (-)
G1531236 NA other downstream 2532620 25696539 ~ 25708874 (-)
G1536703 NA other upstream 1916225 30284372 ~ 30284762 (-)
G1537022 NA other upstream 2151745 30519892 ~ 30525373 (-)
G1537091 NA other upstream 2234569 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 2543680 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 2643731 31008756 ~ 31014201 (-)
G1534150 NA non-coding downstream 6059 28345036 ~ 28345319 (-)

Expression


Co-expression Network