LOC110496786


Basic Information

Item Value
gene id LOC110496786
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28474349 ~ 28479668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496786
ATGGGTCAAGGCAGAGTGAAGTTTGAGCTGAAGAATCCAGTGTCTGTGACCAGTGTAGCGGTCCAGTACAGGCAGGACGTGGTTCGGGTGGAGGTCAAGCAGGATTTCCTAGGGAACGGTCAGTTGATCCAACCATCTGATCTGACCCTGGGAGGCTGTGCATCCagaATGACAGAGGATGTACTCATCTATATCTGTACCCTtatctacacaccatcaccagtTTAAGGCACTCCCATTGTAAGAACAAATTATGCTGAGGTTGGAGTTGAATGCCATTATCAAAGGAAGCACAATGTGATCAGTAATGCTCTGAAGCCTACCTGGGTTCCCTTTGCCTCCACCAAGGTTGCAGAGCAGCAGCTGGTCTTTTCTCTCAGGCTCATGACAGATGACTGGCAATTTGTGAGGCCCTCCAGTGTCTACTTTCTGGGGCATGTCATGAGCATTGAAGCCTCCATTATCCAAGCCCACCACACAACTCTCCATGTCTACGTGGACAGCTGTGTGGATACGCTGGCCCCTGAACCTAGATATTCCTTTATTGAGAACCATGGGTGTCTTACTGATGCTAGACATACAGGCTCCAAGTCCCACTTCCTGCAGCAAACCCAGGATGACAAACTCTAGTTTCAGCTTGAGGACTTCAGGTTCCACCAAGATGAGAGGAGCTCTATGTACATCACATGTCATCTGAGAagagAAATGTCGGCCTCTGCTTCCATTGACTCAGAACACATGGCTTGCTAGTTTACAACAGAGGCAAACCGGTGGGCTTCAGCAGGTGGGGATGACCTGGTGTGTGGCTGCTGTGACTCCACCTGTGGCCTGAGAAAGGGGAGGAGTCTGCTGACTGACATTGTATTCTACCAGAGTAATCTTTGA

Function

NR:

description
PREDICTED: zona pellucida sperm-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496786 True 885 mRNA 0.49 9 28474349 28479668

Neighbor

gene id symbol gene type direction distance location
LOC110495958 LOC106574318 coding upstream 527172 27943362 ~ 27958807 (+)
LOC118941047 mdh1b coding upstream 533551 27938032 ~ 27940798 (+)
si:dkey-1h24.6 LOC106574316 coding upstream 543011 27925782 ~ 27931338 (+)
LOC110495952 NA coding upstream 642444 27829955 ~ 27843859 (+)
alg11 alg11 coding upstream 645007 27820568 ~ 27829342 (+)
LOC110495966 LOC106575106 coding downstream 41812 28521480 ~ 28595208 (+)
LOC110496787 LOC106575108 coding downstream 154143 28633811 ~ 28644214 (+)
LOC110495968 LOC106574333 coding downstream 166913 28646581 ~ 28672693 (+)
LOC110495972 NA coding downstream 252921 28732589 ~ 28735229 (+)
zgc:174945 LOC106574385 coding downstream 1702564 30182232 ~ 30186368 (+)
G1534194 NA non-coding upstream 88055 28386030 ~ 28386294 (+)
G1534173 NA non-coding upstream 103900 28369831 ~ 28370449 (+)
G1534045 NA non-coding upstream 203830 28263711 ~ 28270519 (+)
G1533948 NA non-coding upstream 329571 28143972 ~ 28144778 (+)
G1533073 NA non-coding upstream 358146 28055097 ~ 28116203 (+)
G1534339 NA non-coding downstream 32350 28512018 ~ 28515959 (+)
G1534330 NA non-coding downstream 115978 28595646 ~ 28597306 (+)
G1534380 NA non-coding downstream 131260 28610928 ~ 28611162 (+)
G1534385 NA non-coding downstream 136614 28616282 ~ 28616493 (+)
G1534388 NA non-coding downstream 138555 28618223 ~ 28618476 (+)
G1533121 LOC106574322 other upstream 435873 27974813 ~ 28038476 (+)
LOC110495947 LOC106575089 other upstream 822524 27629477 ~ 27750060 (+)
G1532307 NA other upstream 1716672 26757369 ~ 26757677 (+)
LOC110496782 LOC106575224 other upstream 2530671 25930184 ~ 25943678 (+)
G1534488 LOC106574337 other downstream 324360 28804028 ~ 28804673 (+)
G1534495 NA other downstream 333161 28812829 ~ 28813103 (+)
G1536720 NA other downstream 1817463 30297131 ~ 30297346 (+)
G1537251 NA other downstream 2342840 30822508 ~ 30828046 (+)

Expression


Co-expression Network