LOC110495969 (LOC106574334)


Basic Information

Item Value
gene id LOC110495969
gene name LOC106574334
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28672829 ~ 28675992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571539.2
AAAAAATGTGTAGTGCTGAAAAGAACGTCGCTGTCGAGATGCGCAGCCAGGACGCATGTTGATGTTCGCGAACATGACCGATTGAAAAAATACCCACAATGCAAAGCGGCGTATCACATTGGAAGTAATCACTCTGTGAACGAGTGTCAAATTCAAGTATGGCGCTTCATAAACTATTCCGTCTGTCCTCGCTGTTCCGCTCCGCCGTGTCATTGACACTGCGCAGGAATATCGGCCTGTCTGCTGTTCTCTTCAACCGGGCCAAGGACTTGGACCCTATCCAGAAACTATTCCTAGATAAGATCCGCGACTACAGCACCAAGAGCAAggcTGCAGCAGGTGGGATTGTTGATGCAGGCCCCTCTTACGAAAAGGGTGTCTCAGAGGAGATCACCAAACTACAGAGGTTATATGGGACCGGTGACCTCACCAAATTCCCTGACTTCAAATTTACAGAGCCCCAGCTGCAGGAAGTGGCCAAGTGAACACTGGCCATGATGACGTTGTCTCTGTCCTACATGTCACCACTATAATGTACTATTTAATAAATGTGAGAACATTGTTTTCTTATGCTAAATCATGTTCAACCTTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02131 ATPeF0F6, ATP5J; F-type H+-transporting ATPase subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571539.2 True 592 mRNA 0.47 4 28672829 28675992

Neighbor

gene id symbol gene type direction distance location
LOC110495963 LOC106574327 coding downstream 304682 28241494 ~ 28368147 (-)
LOC110495961 LOC106574325 coding downstream 473071 28124599 ~ 28199758 (-)
LOC110495955 LOC106574324 coding downstream 580633 27995381 ~ 28092196 (-)
LOC110495959 LOC106574321 coding downstream 677533 27985466 ~ 27995296 (-)
prkag3a LOC106575098 coding downstream 690124 27974808 ~ 27982705 (-)
LOC110495970 app coding upstream 13130 28689122 ~ 28731312 (-)
LOC110495971 cyyr1 coding upstream 63026 28739018 ~ 28758685 (-)
LOC110495973 LOC106574336 coding upstream 84680 28760672 ~ 28768063 (-)
LOC110495974 LOC106574337 coding upstream 95358 28771350 ~ 28805355 (-)
LOC110496788 gart coding upstream 577535 29253527 ~ 29274733 (-)
G1534612 NA non-coding downstream 52041 28620585 ~ 28620788 (-)
G1534602 NA non-coding downstream 65360 28607174 ~ 28607469 (-)
G1534597 NA non-coding downstream 71528 28601070 ~ 28601301 (-)
G1534596 NA non-coding downstream 71850 28600746 ~ 28600979 (-)
G1534535 NA non-coding downstream 156866 28511950 ~ 28515963 (-)
G1534653 NA non-coding upstream 27769 28703761 ~ 28715287 (-)
G1534743 NA non-coding upstream 188094 28864086 ~ 28864432 (-)
G1534764 NA non-coding upstream 203197 28879189 ~ 28879473 (-)
LOC110496785 LOC106574363 other downstream 758309 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 874216 27754174 ~ 27798978 (-)
G1533378 NA other downstream 1483280 27187622 ~ 27189549 (-)
G1536703 NA other upstream 1608380 30284372 ~ 30284762 (-)
G1537022 NA other upstream 1843900 30519892 ~ 30525373 (-)
G1537091 NA other upstream 1926724 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 2235835 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 2335886 31008756 ~ 31014201 (-)

Expression


Co-expression Network