LOC110495971 (cyyr1)


Basic Information

Item Value
gene id LOC110495971
gene name cyyr1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28739018 ~ 28758685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571542.2
CGGAGAGATGCAAATGTTATCGAGGTACTTCCATCCCTTTTCCCACCCAGTCAACAGTAATTTGAGAAAATAGCTGCTGCGGGGGAGGGGAAGCCCTAGGACCTACTCCAAGGAAAAAAGGAACAGAAGAAAACAACGAGGAAAGACTGAAGGAAACACTTTTAGAGATACGAACACATGAAAGAAGAAACGAATGAGACTTTTCATTCTGATTTAAGCATTTTAATGACTGGAGCAAATATCCATGAATCTGCGTTCATGGCTCTCTTCGATTGAACTTTTTAGAGAACTCGATTGCGCATATCAGCGATGTTTCGGTGAGCGACTATATCCCATAGTCTTCTTCGTGGGCGCATATTAATGAAAAACACGGACTTTATCGTTTGGGAATAACTGTGAGCCACATTTAGAACAAGTAGGCCTATGTTATCAGTCGATATGGAAAGAACGGAGGCAGCGGGGTGGAAGTTCCTACGGGACTCTCTCCTACTTTGTGTTTTTGCCGGTCACAGTGAGGCCCAGTGTGATGGCTGTGTGGAGTACTGCTGTGGAGGCTCTCCCCCTTTCTGCTGCTCCTACTACGCCTATATGGGAGATGTCCTCTCGGGCACGGCGATATCGGGCATCGTGTTTGGTGTGGTGTTTCTGATGGGAGCGCTGGCGGccttcttcctgtgtgtgtgcatgtgtgtgaagaATGGGCGCGGGGCCCGGGTGGATGTGTTCAACACCTCCTACATCAACACTGTGTCCCAGGGCTACCCAGgacCCCCACCTCCCTACACCTATGACTATGAGATGTACCCTTCGGCCATGCGCCCCCCTCCctacacccccaccccacccaggATAGACAGCTACTCACCTCCCCCTCCGTATCCGAGCTGTAATCGCAAATGACTTGAAGACAAAATGGAGAATCCTGCCCAGGCTACTTGCCCTTCTGAAGGAGCACATCTTGGATTAAGTTTATGCAGTGTTCTAGCAGAGAAAGATGAGACTGTAAGCATTTCCTTTCGAACATCTGGATCACTTAAAATGACTGCATGTGGACTGGACCACTTTGACCTCTTCTTGTGGGTGTGATTGGGTCAATTGAACTGACTGGTGtcagtcaggggggggggggggggtgaacctCAATCACTTAAAATGACTGTTAAAAATGACACTTAAAATGACTGTGTGGAATGATCCACTTTTGACTATTTGATGTAGGGGTGGTGGTCAATCTAACTGATCAGCTTTTCAGGGGTGAATACCACTTTAGTTGTATTTGACTCATGATAATGAATGAGTGAGGGAACAAAGTTGTACCATTTCTCTGGTAGAGATGACTGTTAGCTGGCTTTCCTTCAGGTCAGTGCTCTTCCCTATCTTATTGCTACAAGGCAAAGGAGAGAACTGTAGCCTCGTCCTAGATATGTTTGTGCTGTATTACCAATTGCTTCATGTGGAAATTACCTGAGGACATGGCGAGACAGCACAcacaaatctgggaccaggctaggaaaaCTGTGTAAAAATATGAATTGTACTATAGAAATAGGATGGTAAACATACGTGtccggggtgaagtttcccctaggtacagatatACAGTCgtatcagcttcccctcccccaatcctaaccttaactattAGTGGAGATAGTACAAAACTGATCTAAAA

Function

symbol description
cyyr1 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including female organism; head; lateral line system; male organism; and pectoral fin. Orthologous to human CYYR1 (cysteine and tyrosine rich 1).

NR:

description
cysteine and tyrosine-rich protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571542.2 True 1672 mRNA 0.47 4 28739018 28758685

Neighbor

gene id symbol gene type direction distance location
LOC110495970 app coding downstream 7706 28689122 ~ 28731312 (-)
LOC110495969 LOC106574334 coding downstream 63026 28672829 ~ 28675992 (-)
LOC110495963 LOC106574327 coding downstream 370871 28241494 ~ 28368147 (-)
LOC110495961 LOC106574325 coding downstream 539260 28124599 ~ 28199758 (-)
LOC110495955 LOC106574324 coding downstream 646822 27995381 ~ 28092196 (-)
LOC110495973 LOC106574336 coding upstream 1987 28760672 ~ 28768063 (-)
LOC110495974 LOC106574337 coding upstream 12665 28771350 ~ 28805355 (-)
LOC110496788 gart coding upstream 494842 29253527 ~ 29274733 (-)
LOC110495975 LOC106574338 coding upstream 655492 29414177 ~ 29841599 (-)
LOC110495976 NA coding upstream 737608 29496293 ~ 29497472 (-)
G1534653 NA non-coding downstream 23731 28703761 ~ 28715287 (-)
G1534612 NA non-coding downstream 118230 28620585 ~ 28620788 (-)
G1534602 NA non-coding downstream 131549 28607174 ~ 28607469 (-)
G1534597 NA non-coding downstream 137717 28601070 ~ 28601301 (-)
G1534596 NA non-coding downstream 138039 28600746 ~ 28600979 (-)
G1534743 NA non-coding upstream 105401 28864086 ~ 28864432 (-)
G1534764 NA non-coding upstream 120504 28879189 ~ 28879473 (-)
G1534770 NA non-coding upstream 122392 28881077 ~ 28881423 (-)
LOC110496785 LOC106574363 other downstream 824498 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 940405 27754174 ~ 27798978 (-)
G1533378 NA other downstream 1549469 27187622 ~ 27189549 (-)
G1536703 NA other upstream 1525687 30284372 ~ 30284762 (-)
G1537022 NA other upstream 1761207 30519892 ~ 30525373 (-)
G1537091 NA other upstream 1844031 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 2153142 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 2253193 31008756 ~ 31014201 (-)

Expression


Co-expression Network