LOC110495973 (LOC106574336)


Basic Information

Item Value
gene id LOC110495973
gene name LOC106574336
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28760672 ~ 28768063 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571543.2
TGCCTCTAAAAGATCAAAGCGGCTTCGGGAAGGGGTGGTCCCGAGTTTGGGGATATATAGGGAGCCGGGGTCTGTCCGCCTTTAATGCGAAATATGAGCAGAAACTAGACGGCACAGTAGAAAACAATTACTGCCCCGAAGTCACATAGAAACTCAAACAGCTGTTGAGTATTCAAGACAGGGCTGAAAGAAACACCAACGTTCCGAATAGTTGGAATTGATCTATTGCTGAGCTTTTTTCGAGCAAGAGAATATAAGACTCGAGCTTGAAGCACCAAGATATTAAGTCTGAGCTGTAGACTATTTTGAATGGGTTTTGCACTGGATTTGTTTccgttttagttttttttagacTTACTTCATTACTGGAGGTGTTTTAGTTCTTGGACTGATGTTTTTTAGTTATTAGTGGAGTCTTTTACGGATTTTACTTGCTTCCGCCAGACACTTCAATATAGTTTTCTCTTTCAGTTAGAAGGGTTTGACACGGAATATGATGTCGTTCGTTTGCGTCTCGTTCAGTTTGATTACGGCTCTGTGCGTGAGAGCGGCGCACGGCACATGGGAGGAAAGTACAGTTGTACCGGTCAGACTCGACCCGGTTCGGCCTGAGAGGGAAGCCGAGCAGGGCCGGACCCTTTCAGTAGAGGAGCGAGAAAAGGAGTCGGAGATGCGAGTCTACCGGTTGGACGTATTTGGCAAACGGGTGGTCTTGAAGCTAGAGCCGGATCAGACCTTCCTGGCACCTGGGTTTGTGTTTCATGTGGTGGGAAGCCCCGAGTCGCAGGCGCAGCGGGAATCTGACAGCAGCGCAGCCGAGACTCGGTGCTTCTTCTCGGGCACGGTGAACGGGGAGGAGGACTCCGCAGCTGCTCTCAACCTGTGTCACGGACTACGGGGCGGATTCTACCTCCAAGGTGAAGAGTACTTCATCCATCCCAATAAATCGAGTGATGCACAGCCTATGGATGGGGACCTCCACCTCATTCGCCGGAGAGGTCGGGAATATTTTGCAGAGGAGAGCAGCTCAAAGTGCGGGGTCAACGAGGAAGAGGACAGGTTGCCAGAGAATCAGGAGACAAAAGTAAACCATGGAACCACTAACCCCGACCACCCAGCCCACCACCAGAGGTCAAAGCGCTTCGTGTCCACGCCTCGCTTCGTGGAGATCATGATCGTGGCCGATCAGTCCATGGCCGAGTTCCACGGTGCCGGCCTCAAGCCCTACCTGCTGACCATCATGGCGGTGGCATCGCGCCTCTACCGTCACCCCACCATCCACAACTCCATCAGCCTAGCCGTGGTCAAGCTCCTGGTGGTTTACGAGGAGGAGAGCAGCCCCCAGGTGTCGTCTAACGCTGCCCTGACCCTCCGCAACTTCTGCCAGTGGCAGCGGCAGCACAACCCGCCCAGCGACCGCCACCCAGAGCACTACGACACGGCCGTGCTCTTCACCCGAACGGACCTGTGCGGCGCCCACTCCTGTGACACACTAGGCATGGCGGATGTGGGCACGGTGTGCGATCCGGAGAGGAGCTGCTCCATCATCGAGGACGATGGGCTGCAGGCGGCATTCACTGTGGCACACGAACTCGGCCACGTGTTCAACATGCCCCACGACGATTCCAAGCAGTGTGCCAGCGTCAACGGTGACCATTGGGGCTCGCACATGATGGCGTCCACCCTGTCCAACCTGGACCAACTCCAGCCCTGGTCGCCTTGCTCCGCCCTCATGGTCACCACCTTCATGGACAACGGACATGGCCAGTGCCTATTGGACAAGCCCCACAAGTCCCAGCCGCTCCCTGCCATGCTACCCGGAAACGTGTACGACGCCAACCGCCAATGTCGCCTGACGTTCGGGGAGGAGTCACAGCACTGTCCCGACCTGAGTACCACATGTGTGGCACTCTGGTGCACAGTGACCACAACCAACGGACTTCTGGTCTGTCAGACCAAGAACTTCCCGTGGGCGGATGGGACGCTGTGTGGCCATGACAGCTTCTGCCTGGCAGGACAGTGTCTGAGCAAGACGGAGGCCGCTCGTCACCAGACCCCAGTCAACGGTGCCTGGGGTGTATGGGGACCATGGGGAGACTGCTCCCGTACCTGCAACGGAGGGGTGCAGTACTCCTTCAGGGACTGTGATAGCCCCCTGCCCAAAAACGGGGGCAAGTACTGCGAGGGCAAGAGGATCCAATATCGCTCCTGTAACACAGAGATCTGCCCTGAGAGCAACGGTCTGTCGTTCCGCGAGGAGCAGTGTCTGGCCCACAACGATATTTCGGCACAGGTGTCGTTCGGTTCGGGAGAGGGCGTGGAGTGGGTTCCCAAATATGCCGGCGTCTCACCCAAAGACCGCTGCAAGTTGGTTTGCCGGGCCAAGGGCACGGGCTACTTCTTCATTCTGAAACCAAAGGTGGCTGACGGTACTCCCTGCAGCCCGGACTCCACCTCAGTGTGTGTGCAGGGTCAGTGTGTGAAGGCGGGCTGTGACCGAATCATCGGCTCCAGCCGTCGCTTCGACAAGTGCAGCGTGTGCGGAGGCAACGGCTCCACCTGCAAGAAAGTGTCGGGTGCCCTGGAGCGTGCCAGGCCTGGTTACCAGAACGTTGTGACCATCCCCGCTGGCGCCACTCACCTGGACGTGAAGCAACGTGCCCCCGGCGGGGGTCGCCATGACAACAGCTACCTGGCAGTGTTGCGCCAGGACGGCACATACCTCCTGAACGGCGACTACAAGCTGATGACTCTCGAAACAGACATCGCCCTCAAGGGGGCGTTGCTACGATACAGCGGTAGCTCCGCCTCCCTGGAGCGTCTACGCAGCTTCTCGCCCCTTCCCGAGGCCCTGACCATCCAGGTGTTGTCTGTAGGCGACTCGCCCCGCCCCCGTGTCAAATACAGCTACTTTGCGCCAAGACCCGTTTTGGTGTCACCTAGTGGCGGAACGGTGGCACGCCGCCAGTCCATCAATGCCATCCGGGAGCTGGGGGAAGCTGAGTGGACCCTGCGGGAGTGGGGCCCATGCTCGCAGAGCTGTGGGGGCGGTACTCAACAGAGGGAGGTGCTGTGTCTGGATCCCCAGGGGCGGCCATCGCGGGAGTGCCCGGAAGAGCTGCGCCCGTTGGCTTCATGCCCCTGCGCCCCAGACCCCTGTCCTTCGTGGTTCCTGGGGGAGTGGTCGGTGTGCTCCAAGAGCTGTGGCCGTGGGTTCCGCAAGCGGCCGCTACGCTGCGTGGGACACAACGGGCGTACACTCGCCCACGAGAGCTGCGACCATAAAGACAGGCCTCGACCACTGCTGGACTTGTGCAACCAGAGCACCTGCTAAGTTTGTCAGCCCACCTCATTATTACGTCCCTAAAGAACAACTCATGAAAGAAAGATAGAAAAAGACTAAAACAACCATATCGTCATGAACTTTGCATCTGAAAACACATTGACCTATCATGAGAATGTTTACATCCCAAGCAGAGTGCTTTCGTGGGTGTTTTCTGGGGTCCAATGGGTCCAAAGTGGCCGACTGATTGACTGACACTGCAGAGCCAACAACATCTCTCTCAATTCCCTCCAGCCACTTTGAGGTTAGACTTTAGTGTTGTTTGGGTCTGCTCCGTGGCACTGCCACCCCTAGAACACCGCATAGACTTGGTGCAGTTGCCTGCTGGGCTGGCACGGGGGCACATTGCAGGCACACTGcgcccttctccctccctccaccccccacccATGTCAGTGGAGCTGAGATGGAGGAAGAGTTTAAATGGACACTTCTCTTTCGAAAAAGCATGCTGCTTTAGGTGCCAATGGCATgcttgtgttcgtgtgtgtgtgtgggggggggggggggggggcagtctgtCCTAGCTGGACTGGACAGACATCTTGGGGGGGGACTATATGTATCACTGTACAGAATTGGTTACCTTGGGGTGAggatgtatgtatatgtattagAAACAAATGAATGGTCTCACTGCCACACATTCCACTCCCTGTATCGGTTGGAGGCACTTCCTGTTTCAAAGGGTGCTGAACAAAAGACAATCCGGATTGTCCCTCCTAATCCATACGACTTTGTACGCAACCAAACTAACTCAATACAGTTCATTTCAATCAACTTCGGTCATTCCTGAACAAGTTGATATGTGCTGCTAACATTCCAGTAGAATCTCCCAATAGACTCATTCCAATACACGTATTATTCAAGATGCATCCTGGACTGAACAAAAACCAATTTCAAAGCCATATAACTCCGCCCCGTCCTAGACCAAAGAGGTGTGTGAGCAAgcgaacgtgtgtgtgtgtgtgtggcttctcTCCTGCTACTACTTCATAAGTAAGTCTCTCCTGCCTTCCGAGAAGGTTTTTTTTTTATGATGACGTTTTGTACAGAATATCCAAACATTATTTATTGTTGTTAAGTATAATCTTGTTGCTTTTTAATATTAttgttgtatttttatttgttattatatTGAAATAACAGAAGGAtgtagagtatatagagtatttatacagtattatatatatGGTCCTAGGTTTATGAATAATAAAGTATCACGTTGACCTATATACTGTTGTCATGTGTGTGATGTGTCTTGGTATTcttacacatccatacacacacacacacctcaatataTCTGACTCTATACACACACCTCAATCTATTCCACTCtatgcgcgtgcacacacactcacaaac
>TU1756793
ATGTATCACTGTACAGAATTGGTTACCTTGGGGTGAggatgtatgtatatgtattagAAACAAATGAATGGTCTCACTGCCACACATTCCACTCCCTGTATCGGTTGGAGGCACTTCCTGTTTCAAAGGGTGCTGAACAAAAGACAATCCGGATTGTCCCTCCTAATCCATACGACTTTGTACGCAACCAAACTAACTCAATACAGTTCATTTCAATCAACTTCGGTCATTCCTGAACAAGTTGATATGTGCTGCTAACATTCCAGTAGAATCTCCCAATAGACTCATTCCAATACACGTATTATTCAAGATGCATCCTGGACTGAACAAAAACCAATTTCAAAGCCATATAACTCCGCCCCGTCCTAGACCAAAGAGGTGTGTGAGCAAgcgaacgtgtgtgtgtgtgtgtggcttctcTCCTGCTACTACTTCATAAGTAAGTCTCTCCTGCCTTCCGAGAAGGTTTTTTTTTTATGATGACGTTTTGTACAGAATATCCAAACATTATTTATTGTTGTTAAGTATAATCTTGTTGCTTTTTAATATTAttgttgtatttttatttgttattatatTGAAATAACAGAAGGAtgtagagtatatagagtatttatacagtattatatatatGGT
>TU1756794
ATGTATCACTGTACAGAATTGGTTACCTTGGGGTGAggatgtatgtatatgtattagAAACAAATGAATGGTCTCACTGCCACACATTCCACTCCCTGTATCGGTTGGAGGCACTTCCTGTTTCAAAGGGTGCTGAACAAAAGACAATCCGGATTGTCCCTCCTAATCCATACGACTTTGTACGCAACCAAACTAACTCAATACAGTTCATTTCAATCAACTTCGGTCATTCCTGAACAAGTTGATATGTGCTGCTAACATTCCAGTAGAATCTCCCAATAGACTCATTCCAATACACGTATTATTCAAGATGCATCCTGGACTGAACAAAAACCAATTTCAAAGCCATATAACTCCGCCCCGTCCTAGACCAAAGAGGTGTGTGAGCAAgcgaacgtgtgtgtgtgtgtgtggcttctcTCCTGCTACTACTTCATAAGTAAGTCTCTCCTGCCTTCCGAGAAGGTTTTTTTTTTATGATGACGTTTTGTACAGAATATCCAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571543.2 False 4711 mRNA 0.54 8 28760672 28768063
TU1756793 False 636 lncRNA 0.37 1 28760844 28761479
TU1756794 True 505 lncRNA 0.42 1 28760975 28761479

Neighbor

gene id symbol gene type direction distance location
LOC110495971 cyyr1 coding downstream 1987 28739018 ~ 28758685 (-)
LOC110495970 app coding downstream 29360 28689122 ~ 28731312 (-)
LOC110495969 LOC106574334 coding downstream 84680 28672829 ~ 28675992 (-)
LOC110495963 LOC106574327 coding downstream 392525 28241494 ~ 28368147 (-)
LOC110495961 LOC106574325 coding downstream 560914 28124599 ~ 28199758 (-)
LOC110495974 LOC106574337 coding upstream 3287 28771350 ~ 28805355 (-)
LOC110496788 gart coding upstream 485464 29253527 ~ 29274733 (-)
LOC110495975 LOC106574338 coding upstream 646114 29414177 ~ 29841599 (-)
LOC110495976 NA coding upstream 728230 29496293 ~ 29497472 (-)
LOC110495979 LOC106574339 coding upstream 1549313 30317376 ~ 30396869 (-)
G1534653 NA non-coding downstream 45385 28703761 ~ 28715287 (-)
G1534612 NA non-coding downstream 139884 28620585 ~ 28620788 (-)
G1534602 NA non-coding downstream 153203 28607174 ~ 28607469 (-)
G1534597 NA non-coding downstream 159371 28601070 ~ 28601301 (-)
G1534596 NA non-coding downstream 159693 28600746 ~ 28600979 (-)
G1534743 NA non-coding upstream 96023 28864086 ~ 28864432 (-)
G1534764 NA non-coding upstream 111126 28879189 ~ 28879473 (-)
G1534770 NA non-coding upstream 113014 28881077 ~ 28881423 (-)
G1534773 NA non-coding upstream 114424 28882487 ~ 28882769 (-)
LOC110495955 LOC106574324 other downstream 724056 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 846152 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 962059 27754174 ~ 27798978 (-)
G1533378 NA other downstream 1571123 27187622 ~ 27189549 (-)
G1536703 NA other upstream 1516309 30284372 ~ 30284762 (-)
G1537022 NA other upstream 1751829 30519892 ~ 30525373 (-)
G1537091 NA other upstream 1834653 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 2143764 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 2243815 31008756 ~ 31014201 (-)

Expression


Co-expression Network