LOC110495974 (LOC106574337)


Basic Information

Item Value
gene id LOC110495974
gene name LOC106574337
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28771350 ~ 28805355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571544.2
TTTTGTGTTTTGTTCTCCAAGTTCAGCTCGGTCATCAAGCCCTGTTCTCCGCTGCTCTTTTCTTACATCTCCGCGGCGTCTTTTATTCCATTCCCTCCGATGCCATCATTTTTCTGTGTTTTTACACTTTTCATGGGAATTCTGGATATCGAGACCATGCGCATTCAAACGGGACCTGTTCTGAAAATTGTTTGTTCTTCGTTTCCATTGCTGTTTTAGTTGGAATATAAATGTTTAGCCGTGCACTGCTTGTTTTGGGGTAAAGATGTTTTGTGCTTTTGCTGGAGTCATGTTGGTGTTTAGGATTCTTTTGCTGTGCATCGTGGAGTTGCATACGGGCTGCGATGCGGTGCTCGCCGCCGGTCTCACCACTTTCAGGGCTTTCGCTCCACCTGCAAAAGAGGGTGTTGTGCGGACAGTCGATCGGATTTACCATGGAGGTGGGAAGGTTGGTTACCTACTCTACATGGACGGGAGAAGGTTTCAGTTAGATATGGAGAGGGATGAGTCAATTTTGTCACATCACTTCAGTCCGAAATATGTGATGGCCCTGATGGGAGCGGGAGAAAGCGCCTCGCCTCTGCACCGGGAGTGTGTGTACCGGGGAACCGTGGACTCCAACCCCAAGTCCCTGGCGGTTTTCAGCCTCTGTGGTGGGGGTCTAGAGGGCTTTTTCGCTTTGAAACACGCACGCTACACAATCACACCCCTCATCCGAGCCAAGGGACACGATAGCGACGTGCGTTTGCTGGATGACAAGGATGCGGAGAGCGCGCTCCACTACTTCACACAGGAGCGCTTCAGATTCGAAGCCATGCCTGTGAGCGAGAGCTGTGGGACCAAGGAAGGGCGCGGGCGCATGGATGCATCGAGGAAACACCGGCGTAAGGGCAGAGGGAACGGGAAACGCAACACGCACGGTGTCACCCTGGACAGGGGCGAGGAGCGAAGCAGAGCGCACGGCAGAAGATGGTGGAAGCAGTTCTCCAAACCTGTCTCTCCGCCCTCACTGGGAAGTCGGCGCAAGAGGTCAGTTTCGCGCGCCAGGCACGTGGAGCTTCTGCTGGTCGCTGACGAGTCCATGTCCAAGAAGTACGGCAAGGACCTACACCACTACCTGCTCACGCTGGCTTCCATCGCTTCCAAGTTGTACGGCCATGCCAGCATCGAGAACCCCATCCGCCTGTCCGTTGTGAAGGTGACCATGGTCACGGAGAAGGAGGGGTTGGAGGTGTCCAAGAACGCAGCCGCCACGCTCAAGAGCTTCTGCAAGTGGCAGAACCAGCAGAACCCACTGGACGACGACAACCAGCACCACCACGACGCCGCCATCCTCTTCACCAGGcagGACCTGTGTGGGCACCACTCGTGTGACACACTGGGCATGGCCGATGTTGGCACCATCTGCTCACCAGAGAGGAGCTGTGCCGTCATAGAGGACGACGGACTTCATGCCGCCTTCACCGTGGCACACGAGATAGGCCACTTGCTGGGCCTGTCCCACGACGACTCCAAGTTCTGCGAAGAGCGTTTTGGCGCCAGCGCGGACAAGCGTCTCATGTCTTCCATCCTGACCTCCATCGACGCCTCCAAACCCTGGAGCCGCTGCACCTCAGCTACCATCACTGACTTCTTTGACGATGGCAACGcCGACTGTCTCCTGGACTCTCCTCGCCAGCCCATGCTCGGCTCAGAGGAGCTGCCCGGCCAGAGCTATGACGCCGTGCGCCAGTGCCGCCTGGCGTTTGGGCCTGAGTACACGGTCTGCCCAGGCATGGACGTGTGCGCCCGCCTGTGGTGTGCAGTGATACGCCAGGGCCAGATGGTGTGCCTGACCAAGAAGCTGCCCGCCGTGGAGGGCACGCCGTGTGGCAAGGGTCGCATCTGCCTCCAGGGAAAGTGCGTGGACAAGACCCGCAAGAGACACTACTCGGCATCTAACCATGGTAGTTGGAGTTCGTGGGGTCCGTGGGGGGCATGTTCGAGGACGTGTGGTGGAGGGGTGCAGTTCGCCCAGCGTCTATGTAACAACCCGCCACCCCGAAACAATGGGCGCTACTGCACCGGCAAGAGAGCCATCTACAGGTCCTGCAGTGCCACCCCGTGCCCCTCGCCCAGTAAGAGTTTCCGCCAGGAGCAGTGTGAGGTGCGGAATGGCCCCCAGACAGACCCTAAGGGGATGAAGACCTTTGTGGAGTGGGTACCCAAGTTCGCAGGAGTGCTCCCCAAAGATGTGTGCAAGCTGACATGCCGGGCTAAGGGCACAGGCTACTATGTGGTGTTCTCGCAGAGGGTGGTGGACGGGACAGAATGTCGACCGTAcagcagctcagtgtgtgtgaagGGCAAGTGTGTGCGTACCGGCTGTGACGGCATCATCGGCTCCAAGCTGCAGTTTGACAAGTGTGGCATCTGTGGAGGGGACAGCACCGGCTGCATCAGAGTGATAGGCAACTTCACCAAGATGAGTAAGGGCTACACAGACGTTGTGAAGATCCCAGAGGGCTCCACCCACATCAAGGTCCGCCAGCACAAGCCCAAGGATCAGCCCCGGTACACAGCCTACCTGGCCCTGCGTCGTCCCGGTGGCGACTACCTCCTCAACGGCAAGTTCATGATCTCTACCTCAGAGACAGTCATCCCCCTCAACGGTTCGGTGCTCAACTACAGTGGCTGGAGCCAGCGGGATGAGTGGCTACACAGCATGGGCCCTGGGGCCCTCAGAGAGGCCCTTACAGTTCAGATTCTGGCCACGGACTCCAAGAGGCCCCTGGATATCCGCTACAGCTTCTTCATGCCCCGTCGGGTTTTGGCTCCACCACCGCCACCTCCCCTGCAcacctccacaaccacatccaccactactactacaacaaccaccTCTACAAGATCAAGCAGTAGAACCACATCGGCCCCGTTTTCAGCCATGGCTCTCTCTACAGCCCCAGGGGTGTCGACGGCGGCCTCTGGGCCCCAGTGGGTGACTGGCCCCTGGATGATCTGCTCCAGGACTTGTGACACGGGCTGGCAGAGCCGCACGGTGCAGTGCAAGGACCCGCAGGCCAAGCTGGCCAAGGGTTGCCCTCTGGGCGACCGCCCCTCCGCCTTCAAACAATGCCTAGTGAAAAAGTGTTGAAAGGACCAGAAACTAGACTCCCCTGAAAGTAGGGGCTACACACAGACATTGGTTATTGACAGTCAACCCCTCCTCTTCCTTACCCCCACACCTACTATGCCAGGCCCTGCTTGGCATAGCTACAGACATACGACAGATACATGTGGACACTTCCGAATAGTGCAGCCGCCCCAATCAACAACCACCCACTTGCCAAATCCCTCCTCTATCTGAAGGTTTCGTTTGTATTCCTCTGTTAATGACACATTTTGTTTGCTTTTCTGTATGTTCTTGCTACTGTGGGTTTTTCATGATTGTCCGCTTTGTCTCTTTGTCTTGTGTGACTGCACACCTCTGGACAATGGGCCTCCGTACTAGTCTGTTGCGTGGTACTTTTTCTCCACTTCCCTTCGGGGTCCCCTTTTTCTTCTCGCTCCTCCCACGGCCGATTCTCCACATACGATTGGTCTATCCAACTTCCTGTTTGGATTGCGGACCAGGAAGTAGGCTGGGGGCACAAGCAAGAGCGACCAATCCTTACTGTAACCAGTCCAGAAATGGGGTTGAACCGCACTGCAAACATCCCAGGTCAGAAAATGGACACACAGTGATGGAGTGAGTTGGGGCAGAGCTGTGCCCAACagctagtgctgagcgattaacctaaattgtgtttattattttggtttttaaacaactaattgacagaCTTCgtttcaattatttgaattccatttagttatgttttttttctgtgaAGTCAATGCGTACATTGGGCAGTTTCTCTTGAAATAAATCAACTGAATcccgaactgtgcgatgtagttgtagggagttgtagtttccaacaggccaatattcaaAATAATTTAGTGCAGAAAACATGCTAATTAACTACAATGATCATAATCGATTGCGTGCgtacttgtccggtctgtgtctttcttttatgcctgctacattaggttagtACAGAAGAATGTGCGatcgagagggatagagagcagttaCTTTGCgaagtatctctacctgaaaatgcATAATCTAAGTggttgatagttggtattcagcagcaTATTTTACTTTTAAGAACTACTAAAATactgattttgtcagacagcataggcagcagctctatagaaaTAACTTGGAATTAAATATTAAAATCATAAAattaaacaaatgtaatataaacaactgaaatattttattaaagtaaagtaatgtgaataaatgttgtttcagcattcaacccacataatgcatagtgcatttaatatattttttaaatattgatATTTTAATAATCGAACAAAaaccgaaccgacctcaaaaagcactaatcgctcagcactgcCAACTGCCAATGCCCAGTGACACCTATAGAGTGACTCTGGGCCAAAAGACCATGGTGACCCTTCAACTCTGACCTTTGTGGAGGTTAAAGGTTGTAATGTTATGGGATTACATAATGAGTGGGGCTAAGCttgacatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgtaaacATACAAGTGTAAACATATAGTGTTTTTGTCATATTCAGTGTCCTAAACTCTTTTAATGGACTTTAACCCTCAGTTCCATTTGTATCACTATGCGGGCGCTAGAGGGTCGCTACCATTTTGTCACTGTGTTTCTTTGgctctccatgtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctaggaaAAAAAGAAATGATTGCTAGTATGACAATGTGTGCACTGGATACTCGCAAATACAGCAAGAGGGAAACTATCCCAGTCATACCTGACCAAATACACTTCTAcagctcgctcgctcgctctttctctctatctctctctcactcgctcaccctctccatctctcattcaacATATTGACACATTCTTGTTTAAGCTATCCATTTCTCAcactcactctttcactcactctcacaTCCACTACCATCCATTCTCCgtcatccctctgtccctcatGAGCTTGTAATGCTATACCACACACCTTTTCAAGAGTGATGATAGACATGCATTATACTGGATACATATGGGCTCTTGCCACATAGGCACAACTCCCTATTTCTCATTTCTCatacacaggcacagacacacattcacataaaGAATACACAACACCCCCAAATGACTTAATTACACATTTAGATATAAACACCAATATCACATATGTACAGAATACAttttgcacacacacataaatatggAAAGAAAATTAAACcacacgcatacaaacacacagacacacacacacatactgtatatgtattactGTTTGACACTTCCCATGGGAAAAGACCCTTTCGTTGAACGACAGAAACACAGCACTGAACTTGTAATTTATTGTTTGTACAACTGGTATGTGAAATAAAACGTGATGAATTTATTTAT
>TU1756796
TTTGGATTGCGGACCAGGAAGTAGGCTGGGGGCACAAGCAAGAGCGACCAATCCTTACTGTAACCAGTCCAGAAATGGGGTTGAACCGCACTGCAAACATCCCAGGTCAGAAAATGGACACACAGTGATGGAGTGAGTTGGGGCAGAGCTGTGCCCAACagctagtgctgagcgattaacctaaattgtgtttattattttggtttttaaacaactaattgacagaCTTCgtttcaattatttgaattccatttagttatgttttttttctgtgaAGTCAATGCGTACATTGGGCAGTTTCTCTTGAAATAAATCAACTGAATcccgaactgtgcgatgtagttgtagggagttgtagtttccaacaggccaatattcaaAATAATTTAGTGCAGAAAACATGCTAATTAACTACAATGATCATAATCGATTGCGTGCgtacttgtccggtctgtgtctttcttttatgcctgctacattaggttagtACAGAAGAATGTGCGatcgagagggatagagagcagttaCTTTGCgaagtatctctacctgaaaatgcATAATCTAAGTggttgatagttggtattcagcagcaTATTTTACTTTTAAGAACTACTAAAATactgattttgtcagacagcataggcagcagctctatagaaaTAACTTGGAATTAAATATTAAAATCATAAAattaaacaaatgtaatataaacaactgaaatattttattaaagtaaagtaatgtgaataaatgttgtttcagcattcaacccacataatgcatagtgcatttaatatattttttaaatattgatATTTTAATAATCGAACAAAaaccgaaccgacctcaaaaagcactaatcgctcagcactgcCAACTGCCAATGCCCAGTGACACCTATAGAGTGACTCTGGGCCAAAAGACCATGGTGACCCTTCAACTCTGACCTTTGTGGAGGTTAAAGGTTGTAATGTTATGGGATTACATAATGAGTGGGGCTAAGCttgacatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgtaaacATACAAGTGTAAACATATAGTGTTTTTGTCATATTCAGTGTCCTAAACTCTTTTAATGGACTTTAACCCTCAGTTCCATTTGTATCACTATGCGGGCGCTAGAGGGTCGCTACCATTTTGTCACTGTGTTTCTTTGgctctccatgtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctaggaaAAAAAGAAATGATTGCTAGTATGACAATGTGTGCACTGGATACTCGCAAATACAGCAAGAGGGAAACTATCCCAGTCATACCTGACCAAATACACTTCTAcagctcgctcgctcgctctttctctctatctctctctcactcgctcaccctctccatctctcattcaacATATTGACACATTCTTGTTTAAGCTATCCATTTCTCAcactcactctttcactcactctcacaTCCACTACCATCCATTCTCCgtcatccctctgtccctcatGAGCTTGTAATGCTATACCACACACCTTTTCAAGAGTGATGATAGACATGCATTATACTGGATACATATGGGCTCTTGCCACATAGGCACAACTCCCTATTTCTCATTTCTCatacacaggcacagacacacattcacataaaGAATACACAACACCCCCAAATGACTTAATTACACATTTAGATATAAACACCAATATCACATATGTACAGAATACAttttgcacacacacataaatatggAAAGAAAATTAAACcacacgcatacaaacacacagacacacacacacatactgtatatgtattactGTTTGACACTTCCCATGGGAAAAGACCCTTTCGTTGAACGACAGAAACA
>TU1756797
TGTCATATTCAGTGTCCTAAACTCTTTTAATGGACTTTAACCCTCAGTTCCATTTGTATCACTATGCGGGCGCTAGAGGGTCGCTACCATTTTGTCACTGTGTTTCTTTGgctctccatgtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctaggaaAAAAAGAAATGATTGCTAGTATGACAATGTGTGCACTGGATACTCGCAAATACAGCAAGAGGGAAACTATCCCAGTCATACCTGACCAAATACACTTCTAcagctcgctcgctcgctctttctctctatctctctctcactcgctcaccctctccatctctcattcaacATATTGACACATTCTTGTTTAAGCTATCCATTTCTCAcactcactctttcactcactctcacaTCCACTACCATCCATTCTCCgtcatccctctgtccctcatGAGCTTGTAATGCTATACCACACACCTTTTCAAGAGTGATGATAGACATGCATTATACTGGATACATATGGGCTCTTGCCACATAGGCACAACTCCCTATTTCTCATTTCTCatacacaggcacagacacacattcacataaaGAATACACAACACCCCCAAATGACTTAATTACACATTTAGATATAAACACCAATATCACATATGTACAGAATACAttttgcacacacacataaatatggAAAGAAAATTAAACcacacgcatacaaacacacagacacacacacacatactgtatatgtattactGTTTGACACTTCCCATGGGAAAAGACCCTTTCGTTGAACGACAGAAACA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571544.2 False 5670 mRNA 0.51 8 28771350 28805355
TU1756796 False 1939 lncRNA 0.39 2 28771419 28773421
TU1756797 True 823 lncRNA 0.41 2 28771419 28772297

Neighbor

gene id symbol gene type direction distance location
LOC110495973 LOC106574336 coding downstream 3287 28760672 ~ 28768063 (-)
LOC110495971 cyyr1 coding downstream 12665 28739018 ~ 28758685 (-)
LOC110495970 app coding downstream 40038 28689122 ~ 28731312 (-)
LOC110495969 LOC106574334 coding downstream 95358 28672829 ~ 28675992 (-)
LOC110495963 LOC106574327 coding downstream 403203 28241494 ~ 28368147 (-)
LOC110496788 gart coding upstream 448172 29253527 ~ 29274733 (-)
LOC110495975 LOC106574338 coding upstream 608822 29414177 ~ 29841599 (-)
LOC110495976 NA coding upstream 690938 29496293 ~ 29497472 (-)
LOC110495979 LOC106574339 coding upstream 1512021 30317376 ~ 30396869 (-)
LOC110496790 lig4 coding upstream 1612488 30417843 ~ 30441655 (-)
G1534653 NA non-coding downstream 56063 28703761 ~ 28715287 (-)
G1534612 NA non-coding downstream 150562 28620585 ~ 28620788 (-)
G1534602 NA non-coding downstream 163881 28607174 ~ 28607469 (-)
G1534597 NA non-coding downstream 170049 28601070 ~ 28601301 (-)
G1534743 NA non-coding upstream 58731 28864086 ~ 28864432 (-)
G1534764 NA non-coding upstream 73834 28879189 ~ 28879473 (-)
G1534770 NA non-coding upstream 75722 28881077 ~ 28881423 (-)
G1534773 NA non-coding upstream 77132 28882487 ~ 28882769 (-)
G1534776 NA non-coding upstream 79120 28884475 ~ 28884688 (-)
LOC110495955 LOC106574324 other downstream 734734 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 856830 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 972737 27754174 ~ 27798978 (-)
G1533378 NA other downstream 1581801 27187622 ~ 27189549 (-)
G1536703 NA other upstream 1479017 30284372 ~ 30284762 (-)
G1537022 NA other upstream 1714537 30519892 ~ 30525373 (-)
G1537091 NA other upstream 1797361 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 2106472 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 2206523 31008756 ~ 31014201 (-)

Expression


Co-expression Network