LOC110495979 (LOC106574339)


Basic Information

Item Value
gene id LOC110495979
gene name LOC106574339
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30317376 ~ 30396869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571549.2
CTATCACTCGAACGCTATGGCTGCGTTTTGTGACTGATGCTAAATATTTCATATTCAATTTTGTCATCTGTTAGGCTACTTGTCGAGTCCACATTATTTCCTATCATCTGTTTTAGCTTTCAGAGTAGCTGGATGGCAACTGATGCTGCACCTTCTGAAAACAGACCCTCCAGGTGCGTCAGAATGGAACGGTCGCAGCTCTAAAGATGTCGCGCACGATACAAAAAAGTGTTTCAAGAAGAACATGATGATGGCAACTAACCCAGGACCAAGATGACAGTGGACATCAAAATACAACTTCTCAGGCATTTTGCCGCCTAGCAGACACGGAAGCGAAAATCACTGGGCTGACATAGAACCCAGCCTTCATCCGAGAGCCACGACCGGCGGATTCAAGTCGAACGTAAATGCAGGTTGCCGTAAAACGGGTCCACGCAAAGGACCAGTGCTAAGCGcaggctagaggagaggagggggaagcgAGACATGTTGCTACAGAAAACTAGCATCTTCATCGGAGAGCCATGGAGAACGCGGCCCCATCAAATCACGGTTTAATCTCCTCCAACATATTACTTGAATGTGAATTACAGATAATCGCGGTGGTAAACCAGCAGCACTACCTACGACCCAACATTTAAGAGGTGAAAAACGCAAATTAGACCCCAAGTCAATGAATGTTGCGGCAGAGAATCCCCCACGGTGGTGTCGGCCGGTGAAGAAGCGCGTTCCCAAAATATGACCTGGGGTGCTTGGACGTGTCTGCAGCAAGAAGACGGCTTCAAAATCTGGCTAGAACCCCGCGAGAACGAAAAGCCATTCGCCGACTCAGAGAGGGCCCAGAGATGGCGACTGTCCTTGGCTTCACTCTTGTTTCTAACCATTCTGCTCTCTGATCACTTATGGTTCTGCGCCGAGGCGAAATTGACAAGGACCCGTGATAAGTTTGCATTGACGGACATGGGAGTTTACCCGTCTGCAAACCCCATCCCATCATCCAGCCTCCATTTAGCACACAGCAGCCTCAGAGAAAACGAATATGCTATTTTTATAGGGAATTCTACCAAACCTTTGTGGCGACTTGAAACTTGCCACCACGATAGTTTATCTAAAAACTGCTTTACTTTTGATGACGCCGATCATTTGTGCAAGGACCTTTCGGAAAAAGAACGGACCCGGACAGTAAATATAAGTGATTTGTACCTTTCATTTTGTAATTCTTATTCTCTTTTGGATTTGTTTTACGGGTCTACGAGTCCGGACAATTTGAACTGCAGTTTTGACGTGCTTATTGATGGCGATGTGGCGAGGTGCAGCCTGTGCGTCCAGGCGTACCAGCGCTACGACCAACACGCCCTGGAGAAATATGAGGAATTTGAGCTTATGACTCAGAAATATGAAACGGATGCATATTCAGTGAGAACATGCATGGATGAATGCAAGGCTGCCTACAAACCGTGGCTGTGTGCACAGTATTTCCCCACCACACAGAGGCATTGTAGAAGGACAGTACCTTGTCTCCAGTACTGCCTTGAGGTTCAGCAGAGGTGTCCCTTCATACTACCGGACAACGACGATCTCATCCACGGAGGAAGCCCCAGCTTCATATGTACAGGGCTACTCGGGAGCCATGGGCAGCCCAACAGCCAGGCAGAGTGTTGCGACGTTCGGTGGGACTCTAAACCGGACAACCGTTCTCGTGGGACGCTGAAAAGGACTCCAACTCCCTCCTGCCATCACCAACAGGGGGCATCGACATCAGTCACCTCGGCCGCCACACCCACCAGACAGTGCAGCAGTAGCGGCCGGCTGAAGCTGTGCATGCTGGTCTTTGTTCTTCTGCACACCGTAGTCACCATTACCACCGCATCCCACAATTCCTCTGGGGTCGTCGGTGTGGCAGCCATTTTCCCCCTGGAGGAAAGCTCCTCCAGTGAGGAATAATGGAAAAAATTTGCAAAAAAACCTCAATGTTTTATTTGGGAATGAGTGAGTTGCAAAACCGGTTCTGACCAGTTCTGGCTCTCTGTTCAGAAAGAACCCTGGAAGGTCCCTGGTATATGCTGTCGAAGCCTCTTTGGGCCACAGGAAGTGAGAGCAATTTACCGGGAGCAAAGGATGCTGGGCATTGTAGTCATGTGGTGAGGCGACGACGTGGGTGGGGCCAACACATCTCAGACCAAAATATCAATATCATATCACCGTGTCAATCTAAACCTGAGTTCACCTTTTCAGTCTCTTGTTTCTTCAGGATGTACTATATTGTTTTTTCTCCTCCTGGTTCAGTTGTTTGTGGAGTTTGTTGGAATGTGAGTGGGTTGTCTTAGAACACATAAGAGGCAGAGAATATTGAAAAAGGTATCACCAACCTGTGTGTTTTTATCCACCCCTCTCTTAACCAGTAACATTTAGCTGCTCCTGGATATGCTAACAATATTCTTAACTCAAACACTCACAAACAGAAAGAGTAAACACTTATTGATCCCCCCTGTCCTGGTGGATACATAGAACATTTCAGTCATATCAGGGTTCTCTCATGGCATTACATATAACTCTAATACAGAGCCAGTGAAGAGCAGGTGTAGTATACCTTTCTACACTGTTTTGCCGACCTGAACCGTATTGTGCTCACTTGGATTATTCTCCTTACACGGTTGCATGTAACCAGGCCAGTGAAGTACAGTACAGCTCAGCTCATTTTAGttcggctcagtagtgtgaataggGTAGCAGTGGAGGTCTTGTCACTTGGATTCAAAATATTCCCACCGATGGACTTCAGTGTACTTCCGAGTTCATATTATTTGAGCCAATAATTTTCTCTCTCATTATCCTGTGTCCGTGCGTTTGCATGTGATGGGCCCAAAGGGGACGTCAGATTTACGAAGCTCAATTTACCTCAAATTAAGTGACCTCTTGGCTTAGATTGACTTTTTCTAAAGCAGTACATCCAAGAACCGTATGTTTGGCTTTTATATTTGACTCATATATTTCTCAATATAAGGCTCTGGTACATCTGGTACATTACAGCCAGTTCACTTCACACAGTGGGAGAGGTGTAacaagacctgggttcaaatagtagtTGTTCTCTTTGAAATATTTTAGCTGTActcgattgagcttgcctggcgcaaTGTAACCAATGGGATTGTCCCAAAAGTATAACTGAAAATCTTTCCCATCTCCAGACAAGCTCAATCAAATGCTCAACACACTTGACAGAAAACTGACACAATTTTACATACCCTCTACAATCATAccctctcctgtgtgtctctatTTGACCTTATTGACCTCATTGTGACCAAGATAATCACCTTGTATCTTTACACAGAGCTAAGGCCTTAGCTAGTAGGCGTTTGTGTGAAGGTAAGGAGTTCTCAAGGGCTGGCTCTACATACTGCATTTCCTTCCGTTGGTGTGACTGCTGCTAACCGGTACTCATTGATATGGCACATTTGGGAGAAATCTGATAGGCTCCTTATGCTTTCACCTTTGACCTTGACATCCCTGTCTTATCCTTCCCGTTCAACTGAGTAGCGCATATTATGGCACCTTTGTTTTTTCTACACGTACATATAATCGGTACTGCCGGAATAACTCTGAAGTCAACCGTACTCGGGCATGAAGACATCAATCGATTAAGGTGACATTTCCTCAAGAccctgatcttgggtcagttctGCATTTGACCCACTAATGGTAGGTGTTAGAATTGGAGGagggaaactgatcctagatctttaCCTAGGGAAAACTTCACCCTGAAAGTCTATGTGTTTTAGCCTTTTCACATTATTTTCCCCTTAGGTTCTCGTAACAGTTGATTTTCTCACAGACACTCATCGAGGTGAACTGTTCTTTGTAGCAATCAATGAACAACATTACTTTATTGTTTCCCTCACCTTTACTTTATTCCCCCAAAAGACAGCAGCGGATGTACCCCTCTCTGTAGAAATAATCTCCCACAAACTCCCCCAAACATTCATGATCTGAACCTTGTGGATCTATGCAGATGTCCTACCCTTGTCTGGCCCCGTACATACTCAAGTTGCACAACTGATGTACAACACATTTGGCACAATGGTTGTGATACAACTGATGTTTTTGTGATTCAACAGAGAGTTTGTCTGCACAATGGTTGTGTAATTATTTTTCtggaaaaaaaatacaatgttgAATGACATGTTATGCCATATGCATTGTACTTCAGTTGAACAACTGGAGTGTTTACTGGTGTAAATATGTCCTAGAGAAGTGAGATATTCAAGATGTCCACCTCTTGGAgatttctgtttttgtattttagGGGAAGCTTCTTGTGTTTGTTTTTCTTGTTTTTGGTTACATTTTCTGTTAATGGTCTCACTTCAAACAAACTACAACTTGTAAAGGCTTTATAAGCATCTACAGTTTGTAGTACTTATGAGTACTTTATGTATGCTTTATAAAGCCTTTTAATGTTGTACTTCGTTTGAAGTTGGACCTTGTTAAGAACTGTCTACAGCATTGTATGTCAGATCAGTAGGAAAGAGAAGATTGGGAAAAGGTGTGATAGGTGTGTGCAAGGAAAATAATGAAGAaaaagaaaattgtaaaaaaaaattacacaGATTCCTTATCTTACTATTGTCATATTATCATACGATAGATGCTTTAGTGCAATTATCTTTTCTTTTTCTACAAAAGAGTTTGATGAAATAATTTATAATGCGTCTCGAAAGTCATCATCTTTTTTGAACATAAGAGAAATGCAGCCACATTTATTAACATTTtgttcaaaataaataaaactatGTTAAATATGA

Function

NR:

description
transmembrane protein FAM155A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571549.2 True 4811 mRNA 0.44 3 30317376 30396869

Neighbor

gene id symbol gene type direction distance location
LOC110495975 LOC106574338 coding downstream 475777 29414177 ~ 29841599 (-)
LOC110495976 NA coding downstream 819904 29496293 ~ 29497472 (-)
LOC110496788 gart coding downstream 1042643 29253527 ~ 29274733 (-)
LOC110495974 LOC106574337 coding downstream 1512021 28771350 ~ 28805355 (-)
LOC110495973 LOC106574336 coding downstream 1549313 28760672 ~ 28768063 (-)
LOC110496790 lig4 coding upstream 20974 30417843 ~ 30441655 (-)
LOC110495980 irs2 coding upstream 59997 30456866 ~ 30476059 (-)
LOC110496791 cars2 coding upstream 92814 30489683 ~ 30497834 (-)
LOC110515180 NA coding upstream 101314 30498183 ~ 30502180 (-)
ndufv1 LOC106588156 coding upstream 209825 30606694 ~ 30612658 (-)
G1536877 NA non-coding downstream 4716 30307668 ~ 30312660 (-)
G1536708 NA non-coding downstream 30114 30287055 ~ 30287262 (-)
G1536680 NA non-coding downstream 47696 30269439 ~ 30269680 (-)
G1536678 NA non-coding downstream 50055 30266857 ~ 30267321 (-)
G1536676 NA non-coding downstream 52643 30264405 ~ 30264733 (-)
G1536962 NA non-coding upstream 26190 30423059 ~ 30506111 (-)
G1536987 NA non-coding upstream 58807 30455676 ~ 30456795 (-)
G1537010 NA non-coding upstream 107322 30504191 ~ 30505718 (-)
G1537032 NA non-coding upstream 139497 30536366 ~ 30536579 (-)
G1537058 NA non-coding upstream 166139 30563008 ~ 30568315 (-)
G1536703 NA other downstream 32614 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 1964758 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2280760 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 2402856 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 2518763 27754174 ~ 27798978 (-)
G1537022 NA other upstream 123023 30519892 ~ 30525373 (-)
G1537091 NA other upstream 205847 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 514958 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 615009 31008756 ~ 31014201 (-)
LOC110496004 LOC106588173 other upstream 1119242 31492852 ~ 31524883 (-)

Expression


Co-expression Network