LOC110496790 (lig4)


Basic Information

Item Value
gene id LOC110496790
gene name lig4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30417843 ~ 30441655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496790
ATGGTTTTCTCCGTTCTGCTCTACGACGCCCACAAGAGTCACGGGACTCGCCTGAAGTCGGTACccccgatctgccaacttctgccTGTTgcgtccgaacagtttggccTAAACACTagtatgacccctctgtggaaagGTCATACGGCTCTCCACAAATACAACCCTACCACCACAGACTCTTTCTACCCGGCCTTGCGTCTCATAGTGCCCCCGTTCGAAAGGGAGCATATGGCCTATGGCATTAAAGAGAGCATGTCAGCCAAGCTCTACGTAGACATCTTGGGTCTCCCCAATAACAGACCGGAGGTCAACAATCTGTTGAATTACCGCACCCCCAACACATCTCAGGGTGAGGCTTATGGACTACTTTATGTTAAAGAAACACTGCACAAGCCAGGGCAACCTCACCATCAGAGAAGTCAATGACTTTCTGGACTTGGTGGCCATCAACAACGTCAGTAAGCAGAAGGACTTGGTGAAGAAGAGCCTTATCACAAAAAGTACGGCACTGGATCAGAACTGGCTTACCCGCATGATCCTGAAGGATATGAAGCTGGGGGTCAGCAAAGAGACCGTGCTCCAGGTGTTCCACTCAGATGCAGCCGAGCTCTACAATATCACCACAGACCTAAACAAGGTATGCCGGCAGCTCCACAACCCCTCTGTCCCTCAGCGAATTGTCCATTGGCCTGTTCTCTGCCTTCAAACCTACTGTATGCTGGCCGCCGTGGCCAACATGCACCAGGTGGAGAAGCAGATGGGCAATAGCACCTTATTCATAGAGACCAAGCTGGATGGAGAGCACATCCAGCTGCACAACGATGGCGACGTCTACAAATACTTCACACGGAACTCCTTCGAGTACACCCAGTAATTTGGTGCATCGCTGCTAGATGGCTCCCTGACGCCTTTAATCCACAATGTCTTCAAGCCCCATGTAGTCAACTGCATCCAGGATGGGGAGATCGTCTACAACCCCACCGCTGACACCTTCATGCAAAAAGGAAGCAAGTTTGACTTCAAGAGGCTAGTGGACGACTCCGAGCTGCAGACGTGCTTTTGCGTTTTCGATGTACTTCTTGTGAACGACCACAAGTTTGGCAACGAGATGTTGAAGGAGCGCCACAACAACCTTCAGACGGTCTCCACGTGGTTCTGAAAACAAAGGCCGAAACCATGCAAGAGGTGGTGAACTCCCCTCATTGAAGCCATTGACAACAGGGAGGAGGGCATCATGGTGAAAGATCCCTGATCCATCTACAAGCCCGATAAGTGAGGTGAGGGCTGGCTCAAGCCGGAGTACGTTGTTGGCTTGATGGATGAGTCCGACCTGTTGATTGTCGGAGGCTACTGGGGAAAAGGAAGGCGAGGTGGTGGTATGATGTCTCATTTACTTGTCGCGGTGGCCAAAGCTCTGAagcctggagagaaaccctccgtCTTCCACAAGCTCTGTCGCATCGAGTCTGGCTACACCATGAATGAGCTCTACGACTTGGGGCTGAAGCTGGCCAAGCACTGGAAAGTCTACCGGAAGAACGACCCTCCGGCCTCTTTCCTGTGTGGGAGGGAGAGACCGGAAGTCTATATTGACCCATGCAACTCGGTCATCATCCAGGTGAAGGCAGCAGAAATAGTCAATCGTGACATGTACAAAACCAACTGCACGCTACGCTTCCCCAGAATCGAGAAGATCCGGGAGGACAAAGAGTGGCACGAGTGCATGACTCTAGCTGAGCTCAATCAGTTTCACAACAAGCCGTCTGGGAAGTTGTTCTCGCGCCACCTCCGCATCAATGACAATGACGAGCCCGAAAAGAAGAAGCGAAAGGCACCGGCAGCAGCCAAGCCCAAGAAGTCTGTTGGCGTAATTGACCACTTCAAGTCCCAGGAACTATCTGACGTCATCAAGGAGACAAACATGTTTGAGGCCATGGAGGTCTGTGTTATGGACGGAATTAAGGCGCACCCCAAGGCGGAGCTAGAGAAAGCAGTGGCCCGATGTAGCGGTTTTGTGATCCAGAACCAGGGACCGGACACCTACTGTGTGATCGCCGCTGTGGAGAACACACATGTGAAGAACCTGATCTTTTCAGACCAGCGCGACGGGGTGTGGGCTGCCTGGCTGCTGGAGTGCCTTCACAGGAAGCAGGTGGTGCCATGGAAACTGTGTCACATGATACACATGTTGCCCTCCACCAAGGAATACGACTGCTACGGAGACAGCTACTTCGTGGACACGGACGAGCAGCAGCTGAGGGAAGTCTTCGGTCGGATTTGTAGCGTGGACACTTTGATGGCACAGTGCATCGCTAAGTTGGAGGAACGCTATAGCTAGGATGACCTCCCCACTAGCATGTTCAGACCTTTCAGGGTCTACCAGGACAGGTACGCAGACATAGGAGACCCTAAAAGCACCTGTCTGGACACACCTGTCTGGGCTCTGGAATTCCGCTTACACGGAGTTACAGTAGTGGAGAAGCTCGGGGTCCCTCATGTCATAGTGGTGGAGGAAACAAAAGTGTTGGCTTTAAGAACCCTCAGACGACTATTTACCAAACGGTTTAAGATTGTTAGAGAGTCATGGGTAACAGAGTCTACCAAAGCAGGGTTTTTGCGGAATGACAATGATTACCTAGTGTGA

Function

symbol description
lig4 Predicted to enable ATP binding activity; DNA binding activity; and DNA ligase (ATP) activity. Acts upstream of or within double-strand break repair via nonhomologous end joining. Predicted to be part of DNA ligase IV complex and DNA-dependent protein kinase-DNA ligase 4 complex. Human ortholog(s) of this gene implicated in several diseases, including DNA ligase IV deficiency; colorectal cancer; high grade glioma; multiple myeloma; and prostate cancer. Orthologous to human LIG4 (DNA ligase 4).

NR:

description
PREDICTED: DNA ligase 4

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003909 DNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496790 True 2647 mRNA 0.52 2 30417843 30441655

Neighbor

gene id symbol gene type direction distance location
LOC110495979 LOC106574339 coding downstream 20974 30317376 ~ 30396869 (-)
LOC110495975 LOC106574338 coding downstream 576244 29414177 ~ 29841599 (-)
LOC110495976 NA coding downstream 920371 29496293 ~ 29497472 (-)
LOC110496788 gart coding downstream 1143110 29253527 ~ 29274733 (-)
LOC110495974 LOC106574337 coding downstream 1612488 28771350 ~ 28805355 (-)
LOC110495980 irs2 coding upstream 15211 30456866 ~ 30476059 (-)
LOC110496791 cars2 coding upstream 48028 30489683 ~ 30497834 (-)
LOC110515180 NA coding upstream 56528 30498183 ~ 30502180 (-)
ndufv1 LOC106588156 coding upstream 165039 30606694 ~ 30612658 (-)
hcn3 LOC106588157 coding upstream 179075 30620730 ~ 30637860 (-)
G1536932 NA non-coding downstream 9673 30389023 ~ 30408170 (-)
G1536930 NA non-coding downstream 29659 30387939 ~ 30388184 (-)
G1536927 NA non-coding downstream 31511 30386037 ~ 30386332 (-)
G1536877 NA non-coding downstream 105183 30307668 ~ 30312660 (-)
G1536708 NA non-coding downstream 130581 30287055 ~ 30287262 (-)
G1536987 NA non-coding upstream 14021 30455676 ~ 30456795 (-)
G1537010 NA non-coding upstream 62536 30504191 ~ 30505718 (-)
G1537032 NA non-coding upstream 94711 30536366 ~ 30536579 (-)
G1537058 NA non-coding upstream 121353 30563008 ~ 30568315 (-)
G1537072 NA non-coding upstream 126764 30568419 ~ 30598012 (-)
G1536703 NA other downstream 133081 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2065225 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2381227 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 2503323 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 2619230 27754174 ~ 27798978 (-)
G1537022 NA other upstream 78237 30519892 ~ 30525373 (-)
G1537091 NA other upstream 161061 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 470172 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 570223 31008756 ~ 31014201 (-)
LOC110496004 LOC106588173 other upstream 1074456 31492852 ~ 31524883 (-)

Expression


Co-expression Network