Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110496791 |
| gene name | cars2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 30489683 ~ 30497834 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cars2 | Predicted to enable ATP binding activity and cysteine-tRNA ligase activity. Acts upstream of or within gonadotrophin-releasing hormone neuronal migration to the hypothalamus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 27. Orthologous to human CARS2 (cysteinyl-tRNA synthetase 2, mitochondrial). |
| description |
|---|
| PREDICTED: probable cysteine--tRNA ligase, mitochondrial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110496791 | True | 1402 | mRNA | 0.50 | 15 | 30489683 | 30497834 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110495980 | irs2 | coding | downstream | 13624 | 30456866 ~ 30476059 (-) |
| LOC110496790 | lig4 | coding | downstream | 48028 | 30417843 ~ 30441655 (-) |
| LOC110495979 | LOC106574339 | coding | downstream | 92814 | 30317376 ~ 30396869 (-) |
| LOC110495975 | LOC106574338 | coding | downstream | 648084 | 29414177 ~ 29841599 (-) |
| LOC110495976 | NA | coding | downstream | 992211 | 29496293 ~ 29497472 (-) |
| LOC110515180 | NA | coding | upstream | 349 | 30498183 ~ 30502180 (-) |
| ndufv1 | LOC106588156 | coding | upstream | 108860 | 30606694 ~ 30612658 (-) |
| hcn3 | LOC106588157 | coding | upstream | 122896 | 30620730 ~ 30637860 (-) |
| LOC110496793 | LOC106588158 | coding | upstream | 146676 | 30644510 ~ 30649112 (-) |
| LOC110496794 | LOC106588158 | coding | upstream | 163767 | 30661601 ~ 30674549 (-) |
| G1536987 | NA | non-coding | downstream | 32888 | 30455676 ~ 30456795 (-) |
| G1536932 | NA | non-coding | downstream | 81513 | 30389023 ~ 30408170 (-) |
| G1536930 | NA | non-coding | downstream | 101499 | 30387939 ~ 30388184 (-) |
| G1536927 | NA | non-coding | downstream | 103351 | 30386037 ~ 30386332 (-) |
| G1536877 | NA | non-coding | downstream | 177023 | 30307668 ~ 30312660 (-) |
| G1537010 | NA | non-coding | upstream | 6357 | 30504191 ~ 30505718 (-) |
| G1537032 | NA | non-coding | upstream | 38532 | 30536366 ~ 30536579 (-) |
| G1537058 | NA | non-coding | upstream | 65174 | 30563008 ~ 30568315 (-) |
| G1537072 | NA | non-coding | upstream | 70585 | 30568419 ~ 30598012 (-) |
| G1537073 | NA | non-coding | upstream | 70805 | 30568639 ~ 30583563 (-) |
| G1536703 | NA | other | downstream | 204921 | 30284372 ~ 30284762 (-) |
| LOC110495963 | LOC106574327 | other | downstream | 2137065 | 28241494 ~ 28368147 (-) |
| LOC110495955 | LOC106574324 | other | downstream | 2453067 | 27995381 ~ 28092196 (-) |
| LOC110496785 | LOC106574363 | other | downstream | 2575163 | 27839770 ~ 27914607 (-) |
| LOC110495948 | LOC106574314 | other | downstream | 2691070 | 27754174 ~ 27798978 (-) |
| G1537022 | NA | other | upstream | 22058 | 30519892 ~ 30525373 (-) |
| G1537091 | NA | other | upstream | 104882 | 30602716 ~ 30603392 (-) |
| LOC110495992 | LOC106588166 | other | upstream | 413993 | 30911827 ~ 30955199 (-) |
| LOC110495994 | LOC106588168 | other | upstream | 514044 | 31008756 ~ 31014201 (-) |
| LOC110496004 | LOC106588173 | other | upstream | 1018277 | 31492852 ~ 31524883 (-) |
