LOC110515180


Basic Information

Item Value
gene id LOC110515180
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30498183 ~ 30502180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952480.1
ATGTGGAGACTAACAATGGTAGACACGGAAGAAACCTGTAAGCCTGAGCGTCTTGCCCTACCCAGGCACCATGGTAAACCCTATTCAGATCACCCATCGTCTACAGCACTGCTGGATTCCATTGACAAATCTATCTGGAGTACCTCACCTTTCGATGTGGGCAAACTACAAGTTACCCCAGTTGCCATCACCCTGTTGGATCCGTCTCAACCTCCAATCTACAGACCCCAATATCGTCTCAAGCCTGAGCAGGTAGAGGGGATTCGCCCCACTATTGAGGGGCTATTGGGAGCTAACTGCATTTACCGAACTCAATCTCCATGGAACACCCCAATTCTGCCTGTTCTGAAGGCAGATGGtgaaacctacaggatggtacaaGACTTCAGAGCTATCAATGAAGCTACTTTGGGGGTTGACCTACCTGTTCCTGATCCACACATCACCCTGAGCAATCTGTCGCCGAAACACCAATATTTCACTGTCGTGGACCTTGCTAATGCTTTCTTTAGCGTTCCTCTGGATGAGGGGTCTCAGCCTCTGTTTGCATTCACTTACGAAAACCAGCAGTACACGTATTCTGTGCTTCCCCAGGGCTACCGTTGTTCCCCCGGAATTTTCAATTACATCCTGAAAAAACACTTGGGAGAACTCACCCTTCCGGAAGGCACGGTACTCATCCAATACGTTGACGATCTCCTCCTGGGAGCCCCCACTTCGGACCTGTGCTTAGAAATCACCAAAGTCCTGCTGGACTTTTTGGCTAGCAAAGGGTACAAGGTCAAGAAATCAAAAGTCCAGATGTGCAGAAGGACAGTACTCTTTTTGGGTAGAGAAATATCAGGAGACGGAGCTGGACTCTCTACTTCACACAGAAGCTCCATTCTTCACCATCCCAGACCAACCACAGTTGCTGGTATGCTCTCGTTTTTGGGTTTGACGGGGTACAGCCGTACACACATTCCTGACTACACTGCCAGGACTGAACCACTGAGGGAAATAGTCAGACATGCAGGCTCAAGAAACCTTCATGCTCCTCTTATCTGGTCACCTGAGGCCTCTGCTGCATTTGGCCAGTTGAAAACAGACTTGGCTGTGGCTGCAGCTCTCACTGCACCTGACTATGGCAAGACtttccatttggatgtttctgaaaaagaaggattcacctcatccgtTCTTTTCCAGAAAcatgagggggagagaagagtccTGATGTACCACTCCTCAAAATTGGATCACATTGAAATGGGGCAAACCACATGCTCAAGATACGTTGCAGCTGTTGCTAAAGCCATTGAAAAAACTGCTCACCTCGTAATGTGCCACAAAATGGAGATCCACACCCACCATGGTGTTGCAGCGTACTTGATGGCGAAGGAATTCACCTTCAGtgcagagagaaaaaacaaaATTCAGAACAAATGTACACAGTCACACATCACGTTTGTCAACACAGACAAGAACATGGCTGATGCCCTTAATGCGGAAGAAGGAATGACCCACGTCTGCGCAGAAAGAGCTGCTCAAGAACTTAAACTCAGACCAGACCTGGAAAATGAACCCATATTGACTGCAGACCTATGGCTGTACACTGACGGGTGTTGTTACAGAGGAGAAGAAGGCAACATAGCAGCATACGCAGTAGTACAACAGACTGTGGATGGAGCTCACACCACCCTGGAATCAGGTATAATACCTCAGCCCGCATCAGCCCAATTGGCAGAGATAATTGGACTCACCCAAGCATTAACACTGGCCAAAGGGAAAAAGGTCAACATATACACTGACTCAGCATATGCTCATGGAGCAGTACACATCGATGGACCACAATGGGTCAGACGAAACTTTACCACTACTGGAAATCTACCAATCAAGCACAAGACCCAGATGGAGCGTCTGATTGCTGCTGTATCACTTCCTGAAAAAGTGGCCATAATGAAATGCAAGGGCCATCAGATATTGAACTCCAAGATCAGCAAGGGAAATGATGCTGCAGACCAGGCAGCTAAGAAAGCAGGAGGATACACTCCCAGACAAATGGTTCTCCAAATCAGTCCACCTAGGACTGAATTGACTAACCAACACATCAAAGAACTACAACAAGCAGCCGGACCATATGAACACTCAgtgtggggacagaggggagcgACGAAAGGTCCTGATGAACTGTGGCGATGCCATGATGGCAGACTAGTGGCCCCTGCAAACCTCTGTCCTGAACTAATCAGAGAAGCACATGGACCAACACACGAAGGGAAACTGAAGACTCTACAGAGAGTCTCCTACGTATGGTGGCATCCATACATGAAAGAAATGACAGATTTGTTCTGTGACAGTTGTGCCATCTGTGGAAGTCACAATCCAAAGAAACCTTACCAAACACCAATGGGTCACTATCCGGTACCCAATGCCTGTTTCCAAGACATCAGCATAGATTTTACAGACATGGGAGCGGATCAGGTGAAGGGAGGAAAGAGATATTTGCTAGTAATGGTAGACAGATTCTCTAAGTGGGTAGAGGCCATTCCTACAGCAAAGGAGGATGCGAAGTCAGTCATTAAGTGGCTACAAACGGAACTTATACCTAGGTATGGGGTTCCTCGACAAATCAGGTCCGACAATGGGTCCCACTTCTCAAATCAGCACCtaagacaggtggaggagaggtttgGCATTACACACAAGTTTGGCTCAGTGTATAAGCCGCAGTCGCAGGGCCTTGTGGAACGCTGTAATCAAAATCtgaaagctaagatagctaaagtgTGTGCAGGGACCAAATTGACCTGGGTGGAAGCCCTGCCCCTGGCACTGATGGCCATGAGGTCCTCACCAGGTGCAGGGACACATCTTTCACCCCATGAAATAATGACAGGTAGAGTAATGCCAGGGCCACCAAgagagggaggtcatatgcccccTCTTGATGTGCACcaaatagggatgtctgactatGTGAAGAAATTGACGGAATTGTCTGCAGCTCTCTCCAAAAAGATACACCGTGTCGCAGAGAGGGAGCTGACTGACGTCCCGGAACAACCAAGGGTAAAAGTTGGGGACTGGGTAAGGATCaaggtccacaagagaaagtgggctgatcccaggtggactggaccgtacgaagtgaaggaggttacttcacactcagtccaggtcaaaggtaaatcaggcgtACCTTGGCACCACCTGACACATTGTACACCAGCCCCAACCCCTGCCAGAACTCTGGCTGAAGTAAGAAGTGATTTACTCACATCCAATTCGAATTCAAATTCTGACATCCCTCCCGTCTGATCATGTGGAGGAGACTCCCATCCtcagatgatagggacactagagTAGCACCATGGGCTAGAAGGGCTAGGAGACCATGGGAAAGACTGGGTTGTTCTGGCCCATTGTTTGTCCTAATTATAGTCAATGTTGTTTTGACATTGGGAGTAATGATATGGGCAGCCCAGCGTATAATCACTGACCAGGAACAGACTACCCAGCTAAACATCACCAATGCTTCAATATTCTCGGATACGCATGTTCTGTCTAAACGTCAAGTTCAGAATAATGACTTTGAGTGTACTGCAGAATTGATTAGGTCAGCTACTCTGTGTATCCCGCCTAACGCTACTACCACTGTTATACTTACCTGGGGTGTTATTGGAAGCCCAGGTGGCGGTTATGGTACTCATGCAATCAGTTGGTCTAGATCAGTGTGGTACATGACGTGGAAGAATTTAGTGGCAGAGACTGGTCCTGACTGGTCTAGCTGGACAGTGCATCAGATGGCACTCCTGTGGCGGAGCAGGTTGACGTTAACTAAAGTTACAACTGGTTTGAAATTGGTAATCAAACACAGGGAAGGTGGTATCGGCTGTACCCCCTTCTTATTGGCACCATGGGAAGAGCAGAGAGTCTATTGGCATCTTAAGATTTGTTTTACTAACATAACCACCCCTCAAGCTGTTCTTTCTAAGCGACAGGTGGTATCCACTTCG

Function

NR:

description
uncharacterized protein LOC110515180, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952480.1 True 3998 mRNA 0.48 1 30498183 30502180

Neighbor

gene id symbol gene type direction distance location
LOC110496791 cars2 coding downstream 349 30489683 ~ 30497834 (-)
LOC110495980 irs2 coding downstream 22124 30456866 ~ 30476059 (-)
LOC110496790 lig4 coding downstream 56528 30417843 ~ 30441655 (-)
LOC110495979 LOC106574339 coding downstream 101314 30317376 ~ 30396869 (-)
LOC110495975 LOC106574338 coding downstream 656584 29414177 ~ 29841599 (-)
ndufv1 LOC106588156 coding upstream 104514 30606694 ~ 30612658 (-)
hcn3 LOC106588157 coding upstream 118550 30620730 ~ 30637860 (-)
LOC110496793 LOC106588158 coding upstream 142330 30644510 ~ 30649112 (-)
LOC110496794 LOC106588158 coding upstream 159421 30661601 ~ 30674549 (-)
LOC110495990 hax1 coding upstream 285931 30788111 ~ 30802586 (-)
G1536987 NA non-coding downstream 41388 30455676 ~ 30456795 (-)
G1536932 NA non-coding downstream 90013 30389023 ~ 30408170 (-)
G1536930 NA non-coding downstream 109999 30387939 ~ 30388184 (-)
G1536927 NA non-coding downstream 111851 30386037 ~ 30386332 (-)
G1536877 NA non-coding downstream 185523 30307668 ~ 30312660 (-)
G1537010 NA non-coding upstream 2011 30504191 ~ 30505718 (-)
G1537032 NA non-coding upstream 34186 30536366 ~ 30536579 (-)
G1537058 NA non-coding upstream 60828 30563008 ~ 30568315 (-)
G1537072 NA non-coding upstream 66239 30568419 ~ 30598012 (-)
G1537073 NA non-coding upstream 66459 30568639 ~ 30583563 (-)
G1536703 NA other downstream 213421 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2145565 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2461567 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 2583663 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 2699570 27754174 ~ 27798978 (-)
G1537022 NA other upstream 17712 30519892 ~ 30525373 (-)
G1537091 NA other upstream 100536 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 409647 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 509698 31008756 ~ 31014201 (-)
LOC110496004 LOC106588173 other upstream 1013931 31492852 ~ 31524883 (-)

Expression


Co-expression Network