hcn3 (LOC106588157)


Basic Information

Item Value
gene id hcn3
gene name LOC106588157
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30620730 ~ 30637860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571553.2
cctaaaaaaataTGTAAAGTTTTCTAAAGTatctaatctgattacaatatttttgcttgtAATGTAATTTATTACATTCACCTTGAATAATCAGCAATAGGGGTGTTGCAATAAATCTTCAGTTACTGTTAGTTTAGTTTAGCTTACTCTTTGTTAGTAACTTCAGGCGGTACTTCATTTTTTTAAAGGAAGATTACCCCTCTAAGATCTCCATCTCCTTGTGCAATGTTGGTGTTGTCCCCCTATCATTTGTTGCTCCTGCAGCAACAGGTAAACTTTGCAAATCCGACACGTGCGCCTTCGAGACTCGCGAGTCTCTGTGGGAGCGGGACATTCCGTAGTAGAAGGATGAGAAAGGTGACAGGAACTCCGCCGTCATGACAACAATCCGATTACATTGAGACACTTATCTGTGCAGGCTATTTATGCGCATACCAGCAGTGCTTAGGAGCAAGACCCACTTAGAAGAACCGTCGCATGCACTGAACAAGgggtatttatttgtatttttatactAATTGTAATAGAACTAAAGAGAAAGTATTTATTGAGCAACATTGCAACTTTTCTTTGAGCTAGCCTACCTATGTATGGAGGAATTATCTGTGGACATTTAGGCTATCAAGTGGAGGACACTACGCGCAAGAAAAGGTTGCCAAATGTTAAGGATTTAATCAAATGCATATTGTTGATTCGAAGTTTTCTTTTGAACAGTAATCATGTCAAATGTACGCATCAGGCTAAATTTATGTTGGGTTTTAGCGTGCATTCGCGCGTTTCGACGGGCTGCAGAATAGGCTGACCAAAATAGGCATAGGCCGATTTTTTTACTGTCGTCTTGTTCCTTGAGGAAAGTTCTGAAAAACATATATAGAAATCTagtttctgttttttatattgGAAGAAAAAGAGACTGTGCTCATCCTCTGTCATTCAGGGGCTGATGAAGGTAACCTACATGGTGTAAAGATGGATACTAGTCCTACAAGAAGTATTGATGGACAGACAGGTATGGGGGAGAGCCCTGCCCGCAATGGGGAGTCCAGGCACCGAGGCAGCACCAGGGGCAGCTTCCACGCAGTTGCCACATGGAGCTCATCCTCCCAGTCCTCCCAAAAGGAAGATCTAGGGAGCAATGTTAGTAAGAGACTTAATTCTATTGTCAACTCCCAATACAATGACCATCACAGCACCACAGCAGATCCCAAGGGCCAACTGTGGGTGTCAGCAGAACCTGACACAACCACCACCAATACCGCCACTACCACATTCTCCAAAGGAGCAGAAGTCATCACTTCTACTCAGGCCTTAGAGACGGAGGAGAATGACCATGTGGACCAGTCCACCtactttcagaggcagtttggggcGCTGCTCCAGCCAGGGGTCAACAAGTTCTCCCTGCGCATGTTTGGTAGTCACAAGGGCGTGGCAGCGGAGCAGGCCAGGGTCAAATCCTTTGGAGTGTGGATCATCCACCCCTACAGTGACTTCAGGTTCTATTGGGACATTGTGATGCTACTCCTGATGATGTGCAACCTGGTCATCCTCCCCTGGGGCATCACCTTCTTTGAAGACCAGAAAACTTTGCCCTGGATCTCATTCAACGTCATCTCTGACACCTGCTTCCTGGTCGACCTGGTCCTCAACTTCCGCACGGGCGTCCTAGAGGGAGACGACCAGATCATCCTGGACCCCAAGGTGATCCGTATGCGTTACCTGAAGACTTGGTTCGTGGTGGACTTCATCTCCTCCATCCCAATGGACTACATCTTCCTGATAGTGGACCTGGAGGCCCAGATGGAGGCTTCGGATGTGTATCGCACGGCCCGTGCTCTCCGTATCGTCCGCTTCACCAAGATCCTCAGCCTGCTGCGCCTCCTGAGACTGTCCCGCTTCATCCGCTACATCCATCagtgggaggagATATTCCACATGACCTATGACCTGGCCAGTGCTGTTGTGCGTATAGTAAACCTGATTGGTATGATGCTACTGCTGTGCCATTGGGACGGCTGCATGCAATTCATGGTGCCCATGTTGCAGGATTTCCCACCAGATTGCTGGGTTACCAAGAACAACATGGTGAATTCCACATGGCATTTACAGTACTCATATGCCCTGTTCATGGCAATGAGCCACATGTTGTGTATAGGATATGGTGCCCAGGCTCCCGAGGGCATGACGGACGTATGGCTGACTATCATGAGTATGATTGTGGGTGCCACCTGCTATGCCATGTTTCTGGGCCATGCCGCCAACCTGGTTCAGTCCATAGACGCCTCCCGACGACAGTATCAAGATAAGTATAAGCAGGTGGAGCAGTACATGTCGTTCCATAAGCTGCCGGCGGACGTGAGGCAGAGGATCCATGAGTACTATGAGATTCGCTTCCAAGGCAAGATGTTTGACGAAGACAGTATTCTGGGAGAACTCAGCGACCCGCTCAAGGAGGAAATTGTGAGCTTCAACTGCCGTGGGTTGGTAGCCAACATGCCACTGTTTGCCAATACAGATCCTCATTTTGTAACAGTGATTTTGACCAAGCTGCGCTTTGAGGTCTTTCAGCCTAATGACTTCATCATACGGGAGGGAACACTAGGGCGGAAGATGTACTTTGTCCAACACGGCTGTGTTACCGTGCTCCCCCGTGGAAAAAAAGAGATACAGCTTAGCGATGGAGCCTACTTTGGGGaGATCTGCCTGCTGACCCGTGGACGTCGGACGGCAAGCGTGAGGGCTGATACGTACTGCCGCCTCTACTCCCTGAGTGTGGACAGCTTCAACGAGGTCCTGGAGGAGCACCCCCTGATGAGGAGGGCCTTTGAGAGCGTGGCTGTGGACCGTCTGGACCGGGTACAGGGGCGAGAACCCTTCATGAGCTTCTCCGCAGACTGACTGACACTTATGGGCTCATAGAGGAGAGCTGACACAGGCAGCACAGTGGAAACCTATATGACAAGATGGAGGGCATTCAACTGATAAAAATCTGACAGTCAATGGACATGTTGCTTTTGTTTTTAGTTTGGGAACCTACTTATAGAAAGTTATGCTTTAAATATGTTTATTAAGAAGCATATTACAATGGAAACAAGTGTATAAACATATCAATGAGCTTCCCTTTTTAACAGATAAAATAACAGTAATGTACATCAAAacaaaatattaaataaaaattAATAGTACCCCCCTCTTCACACCCAGTCccccacatacagtgcatttggaaagtatttagacctcttgaatttttccacattttgttacgttacagccttattctaaaattgattaaataggtgttttcctcatcaatctacacacaataccgcataatgacaaataaaaaacagGGTATTCAGTCCATATACTCAgaaatttgttgaagcacctttggcagcgattacagcctcaagtcttcttgggtatgacgctataagcttggc

Function

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571553.2 True 3446 mRNA 0.47 8 30620730 30637860

Neighbor

gene id symbol gene type direction distance location
ndufv1 LOC106588156 coding downstream 8072 30606694 ~ 30612658 (-)
LOC110515180 NA coding downstream 118550 30498183 ~ 30502180 (-)
LOC110496791 cars2 coding downstream 122896 30489683 ~ 30497834 (-)
LOC110495980 irs2 coding downstream 144671 30456866 ~ 30476059 (-)
LOC110496790 lig4 coding downstream 179075 30417843 ~ 30441655 (-)
LOC110496793 LOC106588158 coding upstream 6650 30644510 ~ 30649112 (-)
LOC110496794 LOC106588158 coding upstream 23741 30661601 ~ 30674549 (-)
LOC110495990 hax1 coding upstream 150251 30788111 ~ 30802586 (-)
ubap2l ubap2l coding upstream 165323 30803183 ~ 30896875 (-)
LOC110495992 LOC106588166 coding upstream 274721 30911827 ~ 30955199 (-)
G1537077 NA non-coding downstream 22553 30576856 ~ 30598177 (-)
G1537082 NA non-coding downstream 27607 30588248 ~ 30593123 (-)
G1537073 NA non-coding downstream 37167 30568639 ~ 30583563 (-)
G1537140 NA non-coding upstream 2115 30639975 ~ 30640433 (-)
G1537170 NA non-coding upstream 50986 30688846 ~ 30689666 (-)
G1537172 NA non-coding upstream 52434 30690294 ~ 30690881 (-)
G1537194 NA non-coding upstream 66100 30703960 ~ 30704314 (-)
G1537631 NA non-coding upstream 83543 30721403 ~ 30721673 (-)
G1537091 NA other downstream 17338 30602716 ~ 30603392 (-)
G1537022 NA other downstream 95357 30519892 ~ 30525373 (-)
G1536703 NA other downstream 335968 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2268112 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2584114 27995381 ~ 28092196 (-)
LOC110495994 LOC106588168 other upstream 374018 31008756 ~ 31014201 (-)
LOC110496004 LOC106588173 other upstream 878251 31492852 ~ 31524883 (-)
LOC100136047 LOC106605923 other upstream 1047892 31684840 ~ 31692733 (-)
G1538595 NA other upstream 1076646 31714506 ~ 31715181 (-)

Expression


Co-expression Network