LOC110496794 (LOC106588158)


Basic Information

Item Value
gene id LOC110496794
gene name LOC106588158
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30661601 ~ 30674549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952481.1
CTGCTCTGTACTGATTGGCTGTAATCTGGAAGACCAACCAAATATAAGGCATGCACCCAGGAGCCCATCAAGCCAGTCATCCAGGATGAAGGGGTCGCTGCAATGTTTCGCGGTTCTGCTGCTTAGTGGACTTTGCTCTGCTGGGCCGGCAGGGAAAGAGTTTGCCACAGCCTTCATGCAAAATTATATTGAAGACTATAAAGGCTCAAGCTTTAAGATTGAAGTGGCatctccccccacctccctccaaCCCACTAAGGTCAAGGTAACTGCCCTTGGGAAGGTCTATGAGAAGACAGTTGACCCTGGTAAAAGCGTGTCCTTTGACCTACCCAAAGGAGTAGAGATGATTGGCAGTAAAAAGAACTTTCCCACTGTCCTAATCGAAGCTTCCCAGGAGGTCACAGTGTTGTCACTCAACTACAAAAAGGAAACTGCTGACACCTCTGTTGTCTACCCCGTGAAAGACTGGGGAACAGAGTACTTCATCTTCACCCCCATGTCGACCGCTGGTGATAGGTTCTCCAAAGAGTTTTCCATCATCAACTACAAAGAGAAGAACTTTGGGGTTGAGGTCTATCTGACTGCCCCGGTGACATTCCAAAGGCAAAAGTATTTTGCAGGCAGCAAGCTGACAATCGATCTTTTGCCCTTTGAGAGTGTACAGATTCAGAGCCAGTTTGATCTGAGTGGCACCAACGTGATCTCTAAGTTTCCAGTAGGAGTTCTCTCAGGACACAGCTGTACTAAGAAATATACTGGCTGCAACCACGTCTATGAGCAGCTCCAGCCCGTTAAGAGTTGGGGGAAGGAATTCATTGTTGCACCACTGCCTTTCCATAAAGACATCAACAGATATGATAGTCTTTATATCCAAACATCTCAGTTCACTCAAGTCAAAGTCATTCAAACTGGTATCGATTTCCTTACACTACCAATGTTCCCAGGACAATCGTTGGAGCTCATTGTCACCTGGCCAAATTCCTATTACTTGAGTGCTGACAAAGGCATTCAGGTCCTGTATGAGTTCAACGGAGGTGACATAGGAAAGAAGCAATACTACGACCCTTTTCTGTTCACCATTCTACCAACTGATCAATTCAGCACTTCATACTCTCTAGAAGGGCAAGCTGGCTTCCACAACATGTTCGTAATGGTGGCTCTTACCAAGGACCTGGGTGGGTTCACGGTAGACAAGCTCCCAATGCCCTTAAAAATTGAGTGGCACAAAGTGGACGGAACTGAGTACTCATGGGCTGAGGTCTTGTATGGTACTGGAGCTAGCTTTCACCAGATAGCCCACGCTAACTCCCCATTCGCTATCTACAGCATTGGTGGAGCTTATGCCAATGGCTATGGATCGCCTGCCTCTGGTAACCCAGATGCCCCTGAATGCCCAGAGAACAGCCACTATGAGGTGTGTGGAAGGGGCTGTCCTGCCACCTGTGAAGACCCAGAAGGTCCCTCCATGTGCAATACCAGTTGTGTGAAGAGCTGTATGTGTGACAAGGGCTATGTGCTTAATGGAAAAAAGTGTGTGCCCCTCTCGCAATGTGGTTGTCTTTACAATGATAAATACTACAAAAATGGCCAAGTGTTCCATCCCAATgggctctgtcaggaggagtgcACATGCAATGGCAAGGTGAATTGTGTGAAGTTCAGCTGTGGCCCCCATGAGACGTGTGAGGTGAAGAATGGGGTCAGGCATTGCCAGGCTGTTGGAAAGGGAGTCTGCACCATCTCAGGTGACCCACATTACAAGACCTTTGACAACAGCTTATATGACTTCCAAGGTACCTGCACCTACACTGCAGCTCAAGGCTGCTATCTAGAGGGCACACGCCTCAACCCCTTCTCTGTTGTGGTGGAGAATGAGAAGTGGTACGCCATGTCAAATAATCCAAAGGTATCTGTTGCCAAGCTTGTGGCTGTAGAAGTCTATGGTAATACCCTGGTTCTAAGAAAGAATCAAGCAGGAATGATAATGGTAAATGGAATTATGATGAGCCTCCCTGTGAATCTTAACAATGGAGCAGTGCAGGCCTACCAAGAGGGCACCTATGATGTCATCACAACAGACTTCGGCCTGAGAGTCACCTATGACCTTGTGTACCACATCATTGTCACCGTCCCTGGCAACTACCGGGGCAAGACCTGTGGTCTGTGTGGCAATTTCAACGATAACAAGAATGATGAGTTTCAACTGCCTGATGGGAAAGTAACCAAGGACCTCCTGACCTTTGGGGCAGCCTGGAAGATCAGTGTGCCACATGTGGTTTGTGAGGATGGCTGCAGCGGAGAATTCTGCCCCAAGTGTGAGGCAAAGAAGAAACTCATATTTGAGGCTGACTGTAGCATCATCACAAACCCTCAAGGTCCCTTCGTCGCCTGCCACAATGTGATAGACCCCACCTCTTATTTCAGAGATTGTGTCTATGATGTCTGCTTGTCTGAGGGAGACCGTAAGGTTCTCTGTCAAAGCATATCAGCGTACATGATTGACTGCCAGGACTTTGGGGTGAACATCAGTAACTGGAGAACAGCAACCTTCTGTCCCCTGGACTGTCCTGCCAACAGCCATTACCAGAGCTGCTCTGAGATCTGTGCCACCCCATGTCCCGGCCTCTCTGACATTATCACCTGCCCCACCACCTGTGCTGAGGGCTGTGCCTGCAATGTAGACTACTACTTCAATGGGACAGGCTGTGTTAAGTGGGACATGTGCAGCTGTTACCACAAAGGACACACCTACAAGATTGGTGAGTCTGTGTTGTCAGAGGATTGCCAGGAGCTCTGCACCTGCTCTACCTCTGGTGATGTGAAGTGTGAGGCCACCAAGTGCAAGGCTGATGAGAGCTGCCAGGTCAAGGATGGTCAACGTGGCTGCTATCTCAAAAAGTGTTTGTTGGAGACTAATGGTGCCTTCACCCTTTTCAATGAAAGAAGTGGCGCAATCACAGCCATGGGGGCCTATGAGATCATCAAAGTTTGTGACAATGCTCTTGTGGAAGAGTGGTTCAGAGTGGTGGTGACCTTGCAGGACTGTGGGAAGACTGGCCTCAAGAGCGTTGTTGCTGTGTACGTCTACTTTAATGACCTGATCGTCACTGTCAACAGCAAGCATGAAACATGGATAAACGGTAAGAAGGTGACTCTACCACGCCTGATGAGTAATGAGGTCTCGGTGAAGGTTAATGACAAGACAGTGATGATTGAGAGGATGTCAGGCCTTCAGGTGTCATATAGCCTCTCTCAGGAGATCATAGTGACAGTGAGTGCCCACATGGCTGACAAGGTGTGTGGAGCTTGTGGAAGACTGAATCCTTCAGGAGACATCCCGGGCCCTAGTCTCAACCGGACTATGCAGGAATACATGGATGGCTGGAATGCACCAGACTTCCCAGCCTGCAGTGGCGGCCTTTGAACACCATGGAACATTATTTCATCCACAAGACATTTTAACTACTCAGATTAATCACCTCTGATAGAGAATCAGTCTTCAATAAATGTTTGTGATAACTTTAATTCTATTCTTACCGAACAATTACATTTTGTGAAATTATTCTGTAAAAACCAAACAATAAAATGTCGACAAGAAAAGCATCAAAAA

Function

NR:

description
IgGFc-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952481.1 True 3613 mRNA 0.48 10 30661601 30674549

Neighbor

gene id symbol gene type direction distance location
LOC110496793 LOC106588158 coding downstream 12489 30644510 ~ 30649112 (-)
hcn3 LOC106588157 coding downstream 23741 30620730 ~ 30637860 (-)
ndufv1 LOC106588156 coding downstream 48943 30606694 ~ 30612658 (-)
LOC110515180 NA coding downstream 159421 30498183 ~ 30502180 (-)
LOC110496791 cars2 coding downstream 163767 30489683 ~ 30497834 (-)
LOC110495990 hax1 coding upstream 113562 30788111 ~ 30802586 (-)
ubap2l ubap2l coding upstream 128634 30803183 ~ 30896875 (-)
LOC110495992 LOC106588166 coding upstream 238032 30911827 ~ 30955199 (-)
cgnb LOC106588167 coding upstream 284625 30959174 ~ 31005856 (-)
LOC110495994 LOC106588168 coding upstream 334207 31008756 ~ 31014201 (-)
G1537140 NA non-coding downstream 21168 30639975 ~ 30640433 (-)
G1537077 NA non-coding downstream 63424 30576856 ~ 30598177 (-)
G1537082 NA non-coding downstream 68478 30588248 ~ 30593123 (-)
G1537079 NA non-coding downstream 78430 30580980 ~ 30583171 (-)
G1537076 NA non-coding downstream 81776 30573850 ~ 30579825 (-)
G1537170 NA non-coding upstream 14297 30688846 ~ 30689666 (-)
G1537172 NA non-coding upstream 15745 30690294 ~ 30690881 (-)
G1537194 NA non-coding upstream 29411 30703960 ~ 30704314 (-)
G1537631 NA non-coding upstream 46854 30721403 ~ 30721673 (-)
G1537617 NA non-coding upstream 110388 30784937 ~ 30786210 (-)
G1537091 NA other downstream 58209 30602716 ~ 30603392 (-)
G1537022 NA other downstream 136228 30519892 ~ 30525373 (-)
G1536703 NA other downstream 376839 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2308983 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2624985 27995381 ~ 28092196 (-)
LOC110496004 LOC106588173 other upstream 841562 31492852 ~ 31524883 (-)
LOC100136047 LOC106605923 other upstream 1011203 31684840 ~ 31692733 (-)
G1538595 NA other upstream 1039957 31714506 ~ 31715181 (-)

Expression


Co-expression Network