LOC110495991 (cssa27h1orf43)


Basic Information

Item Value
gene id LOC110495991
gene name cssa27h1orf43
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30904024 ~ 30908524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571579.2
AGAATGTCGACCAATCGTGTTCACGTTGTCATGCTGCGTCGCTcaatcccttctcaaagtcaggATATGAGTTGATTAGCCTGCTATTCTCCTCGAAAGTACGTAATGGCATGATTCCAAACGATAAGATATTACAGAGAACGttaattatctcacatttctGAAAATATTTGTAAAGTTGTACTTCTTGTTCACGAAATTGTTGTAGCTAGCGCTCCCATTCACGCCTTGCAAGAGAGCTCCCCTTGTCCCAGATTCGCCCGGAATGCACTGCGCGGCCCATTGACGACGCCTGTGCGTTAACACGATTTATATGgagtttcccatctcctcaaaagtataTCTGGGTAATGTAGCAAACCCAAGAAACCTCTGAAGAAGGACATTTCAGAATGGCCGAGTCACCTTTGTCCGGTGTGAATGTAGTGCTAGTTATGGCATATGGCAGCCTGGTGTTTGTATTGCTATTTATATTCGTCAAGAGGCAGATCATGCGTTTTGCTATGAGGTCCCGCAGAGGACCCCATGCCCCTATTGGACACAATGCACCCAAGGGTTTGCGGGAAGAGATTGACGCACGTCTGTCCAAGGTTCAGGAAATCCGCTTCGAGCCGCGTCTGCTCTCTGAGGAGGATGATAGGCTGAAGCACGGGACACAGTTCAGTTGCTACAACTACCTGTACAGGATGAAGGCTCTAGATGCCATTCGGGACTCGGGGATCCCGCTGCAGGAGATGGGCCGCAACCCAAACGCCATCACAGGACGCAGTTTCCGCAACTGGCTGCTGGATCTGCGTAACTCCCACTCTCTGATCAAGAGCAGCCGTAGCACCCTCATTGACAACCTGTTGGAGGGATATGACAGTGCACGTCATGGCACAGGGGTATTTGGGGAAGAGGAATATATGAAATACCAGGATGCTCTGAATGAACTGGCTGATGTtgtGAAAGCCTACTCCAGCACCACCAGTCTGGCCCAGCATCACCAGTCAGCAGCCAAGGACCTGACCGGTTCCCCAGCCCGCAGCACCCCCCCCACCATCCAAGTTACCTACCTGCCCTCCACCAGCCAGCGCAGCAAGAGGCCAAAGCACTTCCTGGAGCTCAAGAGCTTCAAGGACAACTACAACACACTGGAGAGCACCCTGTGAGAGGTGACTGTTGGGTCAGTTCGATTTCAATTCCTGCTTGTTGAATCCATAGGAATTGTATTCAATAGCAATAATTGGAATTGTGATGGAATTGACCACAGCTTTGCTATGGAGACTACCAAAAACATAGTAACAGATCAAgcatgtagtgtatatactaATGCTTGCGGAAGATCACATTGCATGTACGTTTTACTTTATTTCCATTGGCAATAAGGAGAATTGTCCCATAATACAAAGCATTTGAATAGTCCTATCATCATATCAGGGTCTTTATCCCAGGAATCTACTATGAGTCTATGGTACTTCAATGTATTGGTGCTGACACATACACTAAGGACAAAGACCATTGTACAACAGTTATGCATTACAACTGTTAGTTTCCCCTACACTTGAATTGTAAACTTCACATGTATTTATGTGTTGATTggttgtttgtatagatgaagaaaatatatttatttcaacAGCTTTTTTTTACATGTAGAATCTGAACTGTGTAGTTATGTGATCGTGTGTTGAGATTAAAACATGGAATGGAGCTAAATTACTTTCcatgagttttttttatttttccactAGATGCCATTAGCAAGTTGGGGAGCAACATGGTCCACTGCAGTTATTCAAGGAACAGTGCTTACAAACTATGGATGGTGATCATTGTCAGTTAGAAAATGCAAAGCTTAAATGCTAAATAGGAATGTGAAAATAGTAGatatgaaaataaaatgtatatcaGTGTATGATTCATGCCACAATTCAATTCCAAATTTAAAATTAAATGTGAAAATGGTTAATAGAAAAAGCCAAATGGTAAACAGAAAATCAAAGGCAAATTGAAAGTGGCTGTTTTCATTTTACAACTACCCAATTAATTATTTTCTCTTTTTCAATTTTCATTTTTCAAAGTGTATGCATATGATTTATTGGAGGCGTGAACCAGGAGAGCAACACCACACCCCATGTGGGCTCTCTGTACATTGATTTTAGACTAGAGTAACCAACACACAGGGTGAGAACCCAGGTCTCCTGCGCACCAGAAAAGCATAGGCCTGCTAAGCTGAAGCCTAGGCATTGACTCAGGGAGCCAATGCAACTCTTCAGATCTCAGGCAAGGTAAGGCCTACTCATCATGTCTGGTAACTAAACCACCTGAGTTACAATTCACCATCctttgacctcttcctcctcacagagacacatcTGAGCCACAGCACAAATATGACAAGGGTGtaaataaatgtagaaattaaTTTCAGAATGGAAAAATGCATTCAGTgtaaaccagatataaagtatgtagaaaggAGAATGTACCTACAGTTCCGACCATTTATATGGTCAGACTTACACTTTTCTTTAACAATTCAGAGCGAAGAGTCCAGATTTGAATCACATCCATAACCTGTGGCGAGAGATGAAAACATAAATTGGTGGAGGGCACCCTTCAAACAATTTGGCCCATTCTTCAGCAGCAAACTTCTCTAATTCTTCATTGTTTGAGGGGTGCCCTCCACCAATTGCTGTTTTCATTTCTCGCCATAGGTTATGGATgtgattcagatctggactctTTGCTGGCCACTCCAGAACAGTCCAGTGTTTCTTCTTGAACCATTCCAAGGTGCTTTTtgatgtgtgtttggggtcattgtactGCTGGAAGACCTACAGCTTTCAATGGACACCCATTTTTTTGGAACCTGGGTTGAACATTGGACTCAAACACCTGATAATCTGCTGATTTCATGATGCCTTACGCACGTTCAAGGCCCCCAGCACcagaggcagcaaagcaaccACACAGAATCTTTAAACCTCCCCGATTTTTGATTGTAAGGATGGTGTTCTTTTCCTTGACTGCTTTGTTTGGTTGTCGGTAAACACAGCACTGATCTATACTGCCAAATAGCTCAAACATTGGTCCACAACATTTCACTTGGGATTTAGGGTTGTTTGGGTGGGTTTTTGACAAGTTTATTCAGGTTTTCTAGTCTCCTTCAGCAGTGGTGTCTTCCTATGTTTACCAATGACCAAATTAAGCAATAGACGTATAGTGGACATCACGCCTCAAACATTGAAGACTTAGAACAGTTTGCTGCTGAAGAGTGGGCCAAATTGCAATTTAAAAGGTGCAGCAAGCTCATTGATGGCTACAAGAAGCCTGGAGTGTTCTTGGCCGAAGGCTATGCTGTACTAGCTCCAGGGTACATATAATTTTGTCCATGTCATTTGTctttataaaaatacaaaataaatggaaACTTAAGTTGACAAAAATAAAATTGGTTCCTCAATGTT
>XM_021571580.2
CGCTcaatcccttctcaaagtcaggATATGAGTTGATTAGCCTGCTATTCTCCTCGAAAGTACGTAATGGCATGATTCCAAACGATAAGATATTACAGAGAACGttaattatctcacatttctGAAAATATTTGTAAAGTTGTACTTCTTGTTCACGAAATTGTTGTAGCTAGCGCTCCCATTCACGCCTTGCAAGAGAGCTCCCCTTGTCCCAGATTCGCCCGGAATGCACTGCGCGGCCCATTGACGACGCCTGTGCGTTAACACGATTTATATGgagtttcccatctcctcaaaagtataTCTGGGTAATGTAGCAAACCCAAGAAACCTCTGAAGAAGGACATTTCAGAATGGCCGAGTCACCTTTGTCCGGTGTGAATGTAGTGCTAGTTATGGCATATGGCAGCCTGTTTTTTTGCACAGGTGTTTGTATTGCTATTTATATTCGTCAAGAGGCAGATCATGCGTTTTGCTATGAGGTCCCGCAGAGGACCCCATGCCCCTATTGGACACAATGCACCCAAGGGTTTGCGGGAAGAGATTGACGCACGTCTGTCCAAGGTTCAGGAAATCCGCTTCGAGCCGCGTCTGCTCTCTGAGGAGGATGATAGGCTGAAGCACGGGACACAGTTCAGTTGCTACAACTACCTGTACAGGATGAAGGCTCTAGATGCCATTCGGGACTCGGGGATCCCGCTGCAGGAGATGGGCCGCAACCCAAACGCCATCACAGGACGCAGTTTCCGCAACTGGCTGCTGGATCTGCGTAACTCCCACTCTCTGATCAAGAGCAGCCGTAGCACCCTCATTGACAACCTGTTGGAGGGATATGACAGTGCACGTCATGGCACAGGGGTATTTGGGGAAGAGGAATATATGAAATACCAGGATGCTCTGAATGAACTGGCTGATGTtgtGAAAGCCTACTCCAGCACCACCAGTCTGGCCCAGCATCACCAGTCAGCAGCCAAGGACCTGACCGGTTCCCCAGCCCGCAGCACCCCCCCCACCATCCAAGTTACCTACCTGCCCTCCACCAGCCAGCGCAGCAAGAGGCCAAAGCACTTCCTGGAGCTCAAGAGCTTCAAGGACAACTACAACACACTGGAGAGCACCCTGTGAGAGGTGACTGTTGGGTCAGTTCGATTTCAATTCCTGCTTGTTGAATCCATAGGAATTGTATTCAATAGCAATAATTGGAATTGTGATGGAATTGACCACAGCTTTGCTATGGAGACTACCAAAAACATAGTAACAGATCAAgcatgtagtgtatatactaATGCTTGCGGAAGATCACATTGCATGTACGTTTTACTTTATTTCCATTGGCAATAAGGAGAATTGTCCCATAATACAAAGCATTTGAATAGTCCTATCATCATATCAGGGTCTTTATCCCAGGAATCTACTATGAGTCTATGGTACTTCAATGTATTGGTGCTGACACATACACTAAGGACAAAGACCATTGTACAACAGTTATGCATTACAACTGTTAGTTTCCCCTACACTTGAATTGTAAACTTCACATGTATTTATGTGTTGATTggttgtttgtatagatgaagaaaatatatttatttcaacAGCTTTTTTTTACATGTAGAATCTGAACTGTGTAGTTATGTGATCGTGTGTTGAGATTAAAACATGGAATGGAGCTAAATTACTTTCcatgagttttttttatttttccactAGATGCCATTAGCAAGTTGGGGAGCAACATGGTCCACTGCAGTTATTCAAGGAACAGTGCTTACAAACTATGGATGGTGATCATTGTCAGTTAGAAAATGCAAAGCTTAAATGCTAAATAGGAATGTGAAAATAGTAGatatgaaaataaaatgtatatcaGTGTATGATTCATGCCACAATTCAATTCCAAATTTAAAATTAAATGTGAAAATGGTTAATAGAAAAAGCCAAATGGTAAACAGAAAATCAAAGGCAAATTGAAAGTGGCTGTTTTCATTTTACAACTACCCAATTAATTATTTTCTCTTTTTCAATTTTCATTTTTCAAAGTGTATGCATATGATTTATTGGAGGCGTGAACCAGGAGAGCAACACCACACCCCATGTGGGCTCTCTGTACATTGATTTTAGACTAGAGTAACCAACACACAGGGTGAGAACCCAGGTCTCCTGCGCACCAGAAAAGCATAGGCCTGCTAAGCTGAAGCCTAGGCATTGACTCAGGGAGCCAATGCAACTCTTCAGATCTCAGGCAAGGTAAGGCCTACTCATCATGTCTGGTAACTAAACCACCTGAGTTACAATTCACCATCctttgacctcttcctcctcacagagacacatcTGAGCCACAGCACAAATATGACAAGGGTGtaaataaatgtagaaattaaTTTCAGAATGGAAAAATGCATTCAGTgtaaaccagatataaagtatgtagaaaggAGAATGTACCTACAGTTCCGACCATTTATATGGTCAGACTTACACTTTTCTTTAACAATTCAGAGCGAAGAGTCCAGATTTGAATCACATCCATAACCTGTGGCGAGAGATGAAAACATAAATTGGTGGAGGGCACCCTTCAAACAATTTGGCCCATTCTTCAGCAGCAAACTTCTCTAATTCTTCATTGTTTGAGGGGTGCCCTCCACCAATTGCTGTTTTCATTTCTCGCCATAGGTTATGGATgtgattcagatctggactctTTGCTGGCCACTCCAGAACAGTCCAGTGTTTCTTCTTGAACCATTCCAAGGTGCTTTTtgatgtgtgtttggggtcattgtactGCTGGAAGACCTACAGCTTTCAATGGACACCCATTTTTTTGGAACCTGGGTTGAACATTGGACTCAAACACCTGATAATCTGCTGATTTCATGATGCCTTACGCACGTTCAAGGCCCCCAGCACcagaggcagcaaagcaaccACACAGAATCTTTAAACCTCCCCGATTTTTGATTGTAAGGATGGTGTTCTTTTCCTTGACTGCTTTGTTTGGTTGTCGGTAAACACAGCACTGATCTATACTGCCAAATAGCTCAAACATTGGTCCACAACATTTCACTTGGGATTTAGGGTTGTTTGGGTGGGTTTTTGACAAGTTTATTCAGGTTTTCTAGTCTCCTTCAGCAGTGGTGTCTTCCTATGTTTACCAATGACCAAATTAAGCAATAGACGTATAGTGGACATCACGCCTCAAACATTGAAGACTTAGAACAGTTTGCTGCTGAAGAGTGGGCCAAATTGCAATTTAAAAGGTGCAGCAAGCTCATTGATGGCTACAAGAAGCCTGGAGTGTTCTTGGCCGAAGGCTATGCTGTACTAGCTCCAGGGTACATATAATTTTGTCCATGTCATTTGTctttataaaaatacaaaataaatggaaACTTAAGTTGACAAAAATAAAATTGGTTCCTCAATGTT

Function

NR:

description
uncharacterized protein C1orf43 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571579.2 False 3455 mRNA 0.43 7 30904024 30908524
XM_021571580.2 True 3429 mRNA 0.43 7 30904063 30908524

Neighbor

gene id symbol gene type direction distance location
znf687b LOC106588162 coding upstream 127166 30767138 ~ 30776858 (+)
LOC110496795 LOC106588160 coding upstream 141127 30760567 ~ 30762897 (+)
LOC110495985 LOC106588159 coding upstream 154337 30726807 ~ 30749687 (+)
LOC110496792 cars2 coding upstream 364504 30535014 ~ 30539520 (+)
LOC118940974 LOC108266561 coding upstream 384582 30518620 ~ 30519442 (+)
LOC110495995 she coding downstream 108002 31016526 ~ 31033736 (+)
LOC110496000 LOC106570108 coding downstream 208390 31116914 ~ 31126108 (+)
LOC110496001 NA coding downstream 234601 31143125 ~ 31159895 (+)
LOC110496002 LOC106588171 coding downstream 345662 31254186 ~ 31358812 (+)
LOC110496003 LOC106588172 coding downstream 521781 31430305 ~ 31443574 (+)
G1537273 NA non-coding upstream 47379 30855049 ~ 30856645 (+)
G1537226 NA non-coding upstream 140689 30763055 ~ 30763335 (+)
G1537216 NA non-coding upstream 160772 30742711 ~ 30743252 (+)
G1537208 NA non-coding upstream 183856 30719926 ~ 30720168 (+)
G1537206 NA non-coding upstream 185846 30717939 ~ 30718178 (+)
G1537314 NA non-coding downstream 46582 30955106 ~ 30965748 (+)
G1537364 NA non-coding downstream 117484 31026008 ~ 31026210 (+)
G1537366 NA non-coding downstream 120954 31029478 ~ 31029683 (+)
G1537367 NA non-coding downstream 121210 31029734 ~ 31029941 (+)
G1537368 NA non-coding downstream 121931 31030455 ~ 31030672 (+)
G1537251 NA other upstream 75978 30822508 ~ 30828046 (+)
G1536720 NA other upstream 606678 30297131 ~ 30297346 (+)
G1534495 NA other upstream 2090921 28812829 ~ 28813103 (+)
G1534488 LOC106574337 other upstream 2099351 28804028 ~ 28804673 (+)
LOC110495972 NA other upstream 2168796 28732589 ~ 28735229 (+)
LOC110496006 LOC106588175 other downstream 660367 31568375 ~ 31572239 (+)
LOC110496008 LOC106588176 other downstream 669643 31578096 ~ 31580320 (+)
G1538208 LOC106588182 other downstream 845186 31753710 ~ 31754191 (+)
G1539641 NA other downstream 2111704 33020228 ~ 33020544 (+)
G1539671 LOC106582599 other downstream 2150466 33058990 ~ 33059857 (+)

Expression


Co-expression Network