LOC110495994 (LOC106588168)


Basic Information

Item Value
gene id LOC110495994
gene name LOC106588168
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31008756 ~ 31014201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571594.2
TCTCTCTTGCCTGGCCCTCTTTGTCCGGCGGCGATAGTAGGCCGTGATTAATATGgcaaaatgtgtgtgtttgtttcaatTATTATTTTAAGCTGTACCACAAAAGAAAGCATATACCGTGTGAGGACTGGTATATCGGCAATGACACACTGGAGAGGTTCATATTAACGACTACAGAGCAAGCAACGGAGAAAGGCACCAACAGTCATATTAATGGCTGCCGAATCGGGGAGACTCCTGGCGGGACAAGGCCAAGGAAAGCGAGGCAAAGGTGGACAAATGAAGAgcccagagaagaagaagaggaaatcCAATGCTCAGGGGCCTGGTGGCGCGTTCTCCCACCTCTCTGAGTTTGCGCCCCCTCCCACCCCCATGGTGGACCACCTGGTTGCCTCCAACCCTTTTGACGATGACTTTGGCCCCCCGTCACTGCCGTCCCGACCCGGTGGGGCTGGAGGTCCAGGAGGGGGTCCCTTCCTCCCCAGCCCCGgggcaggtggaggaggagggccgTATGGGGGTGGAGGCAGGATGGGCCCTGGGGGCATGGGCTTCATGGGGGGCCCCGGAGGACCCGTAGGAGGCCCTGGAGGTCCAGGTCGGAGACCGCCTTTCGGTCCAGGACCACCCAACGCAGGACCGCACCACCAGCTGGGCTTTGGGGGGATGCCTGGCTTCGGGGGTGGGGGAGGTTTCCCGGGGCCTGGGGGTCCGTCGCAATTTAACATGCCCCCCAATTTCAGTCCCCCCATGCACCCTGGACCGGCGTTCAACCCCATGCTGTCCCCTGGTGGTATGGGGGGTCCTGGAGGAGGGGGGCCACCGCACCCTCGGTTTGGGATGCCCCCGCAGCAACAGCACGGACAGGGTGGGCACCCCTTCAACAGCCCCCCTTTAACAGGTGGCGGAGGCCCCAGGGGACCCCCACATGGCCCCATGAACCCCATGGGGGGCATGCCTGGAGGGATGAACATGATGGGGGCCATGGGAGGTGGCCCAGGAGGAAACATGGGAGGGATGCCAAGTCTACCCCCTCAAGGACAGTTCCCTCCTTCACAAGATGGGCCCTACCCAGGACCCAGCCCCCCGGGTCCAGGAAATGAGGAGGGGAAGAACTTTGGTGGAGGTGGGCCCCAGTCTGGGCCTCCTCAGCAGCCTAACTTAAACTCCTCTGGTCCCCCAGGTCCCAACAATACTCCCCCCGGGCCTCCCAACTCTGGCCCTCCCCAGCCTGGAGGAGGCTTCCCTGGACACCCTGACCAGCATCCCAACCCCAACACAACTGGTCAGCCCCCCTCAGCACCGCCCCAGCCCAACCCTAACTCCTCCCCCACCGGCCCCCTCAACGGATCCCAGCCTCAGCAGGTGCCGCCAAATCAGCTGCAGGGGCCCAACTCTACCAACACCCCCTCTTCCAATAACCCGCCCCAGCAGCAGTCGACTCTGCCCAATTCTGCCCCTGGCTCCACCCCTTACAACCAGCAGAACAACGCTCCTGGTGGATGCCCCATGCCCAATGCTCCCCCCAACTCTGCCCAGAACAACTTGACCAACAGCGGGGGCAACACCCCCGCCAGCAACCCTAACCCCCCTTCCAACTCCACTCCCAACACCCAGTCTCCGCTGCCCCCCGGCCCCGCCAACACTTCCACGGGCCCAGGCGTCGGTCCAGGAAAGCTGGGGGGCCCGGGAATGGTGTTCCCCTGTGGCTTCTGTCTGTCAGAGGTGCACGACGACCAGGATGCCATCTTGTGCGAGGCTTCGTGCCAGCGCTGGTTCCACCGTGACTGCACGGGCCTGACTGAGCCGGCCTACGGGCTGCTGACCCGGGAGAGCTCTGCCGTCTGGGCCTGCGACTTCTGCCTCAAAACCAAGGAGATCCAGGCTGTGTACGTCCGCCAGGGCCTGGGCCAGCTGGTGGCTGCCAATGAAGGCTGAGGAAcaggaggcggaggaggagagactgggagggcTGCAGGGGAAGAGACAATGACTGCTCTGATCTCTCTCGCCCAACCTTATCTGATAAGCTGTTTACAATGCCCAAATCTCTCTTTTACATACTCAAAAACACTTACACCCACTGGACAGTTTATTGGGTACAGCGCCTCTTTCACGAAAACGGATCGCTCCTGTAGACAATGAGTcatgtggccgtggcttgctatgtAAAGCAGGCAGACCGGCATCGAgtcattcagttactgttcgattgaatgttagaatgggcaacACAAGTGACCTAAGCAAGTGACTTTGAGCGTAGTATGATTgtcggtgccaggcgcaccgggtCCAGGATCACAGActccctcctgggcttttcacgcacaacagtgtctagggtttaccaagAATGATGTGACAAACAAAACATCCAGAATTGTGCAAGCTATCAGGTGggccacaaacaaacaaataaataaccGTGCAGTACAACAGTGAAGTGCAGAATGGCATCTCGGAACCCACAACTCATCAATCCTTGTCAAGGATGGGCTGTTGCAGCAgatgaccacaccgggttccactcctatcagctaaaaacaaaaaGAAGCGACTTCAGTGGGCACGTGATCACCAACATTGGACAattgagtggaaaaacattgcatggaacattcaggctgttctggaagcAAAGCTGTgtccgacccggtactagatgtgtgtacctaataaactggctagTGAGTACATGAAGCACTTTTAGTGACTCTTTTGGACTGAACAACTGATTTCCCCGTACATGACAATGCCCTGTCCacattatcccccccccccagacatttGGCCTGGAGACAAGCAAAGCACTGACACCAACACACTACCTCATACTTTGTGACTGACCAACACAGACGcctcactgacagactgactgaccccTGGTGGGAGCGTGGTCatcttacacacacatacatacctgGTTTTGACCCAGAGCAGATGAATCCAAAGGAGACCCAGGCCACTCCTCAATGTACTAGACTGTCCTCCCACCCACACCTCCAGAGAGAAAAGAATGGCGCCACAGAAAAATGTGTAGATATGCAGCCTGAACGTTTGCCCAAAACACGCCTCTGTCCATCTTGGAATGCAGGAGAATCAACCAatgaacaaaaaaatgtaattatataATGTCTTGGTTATGTCAATGGACTTTTTGTTTTTATACATTGAATCAACCGTTTTATATCTCCTTCACTGGACACAGAAGTTGTGATATCAGTGCTGTTGGATGGTGTTGGCATAGCTACAAGTAGTGACATCATGGTCATATCCAATGTGTGTACTAGTCTTTTGGGAATGCATGTGAACAAATGCAGTAACTTTGTCCAatctgttttttttgtaatttgGTCTCTGCTAGAGGCCTCGAAGTAGACCAAATAACAGAGCAAATAATATCAATGTTCATATTATTGTCATGTCAGGTGTTTGTAATTTtccttcttaaaaaaaaaaaaaaaacattctgtcCAAGTTGCCTTTTTCTCACCCCATTCATTTTTTTTGTACTGCTATCTGCTGTATAATAATGTGCTCTACTCAGGCGCCCTCTGGTGGGAACCTGAGGCACTGACCAGCCCACACAGTGTGGGAAAGATACTGAACTCTGAAGAAGTAAAGAGAATTGTTTTTGTA
>XM_021571595.2
TCTCTCTTGCCTGGCCCTCTTTGTCCGGCGGCGATAGTAGGCCGTGATTAATATGgcaaaatgtgtgtgtttgtttcaatTATTATTTTAAGCTGTACCACAAAAGAAAGCATATACCGTGTGAGGACTGGTATATCGGCAATGACACACTGGAGAGGTTCATATTAACGACTACAGAGCAAGCAACGGAGAAAGGGTATAGTTTGCTTCCCAATAATGCTaacaggctagctagctaacgttaatcaACATTTTATTAACTAGAGACCGGTTATTTTGCGCCGCTGGCTATTATAGAGGCGAAATGTGTAAATTAACCAAATTGAATGTAGGTTATTCATTGTTATAAATCATAATCTACATGTAATCTATAAAAAAAACGAATGACTAATGTTACCCAAATGTGATAGCTAACGTTGCTATACAGCTAGCTCGCTTAATTGCTAACGTTACACATCTGTAAGTGATCAtttttagagggggggggggggggggggtgttaagtTTCATTCAGCCCAGCTCTTCATTTTGTACAAGCTGGCTGCTGAAAGTAAACCTGGCTAGCCACAGTTTTTGAGCATGTGTGTTGGCCAGCAAACCCCGTGACAGTCAAAGTGTGGGGAACAAGATATCGAGTTGTAAATTGCAAGGGAAGACGCACATTACTTATCTATCTATAGAAACTGTCCTCAAATCCAAAGACTGTTTGACTCCACATGCTAGTATTGCTCGggtccaaattctcaagactatTCGTCATTTTACATTTTTCTTACATGATATGAACGGTGACATTGCACAGCACCAACAGTCATATTAATGGCTGCCGAATCGGGGAGACTCCTGGCGGGACAAGGCCAAGGAAAGCGAGGCAAAGGTGGACAAATGAAGAgcccagagaagaagaagaggaaatcCAATGCTCAGGGGCCTGGTGGCGCGTTCTCCCACCTCTCTGAGTTTGCGCCCCCTCCCACCCCCATGGTGGACCACCTGGTTGCCTCCAACCCTTTTGACGATGACTTTGGCCCCCCGTCACTGCCGTCCCGACCCGGTGGGGCTGGAGGTCCAGGAGGGGGTCCCTTCCTCCCCAGCCCCGgggcaggtggaggaggagggccgTATGGGGGTGGAGGCAGGATGGGCCCTGGGGGCATGGGCTTCATGGGGGGCCCCGGAGGACCCGTAGGAGGCCCTGGAGGTCCAGGTCGGAGACCGCCTTTCGGTCCAGGACCACCCAACGCAGGACCGCACCACCAGCTGGGCTTTGGGGGGATGCCTGGCTTCGGGGGTGGGGGAGGTTTCCCGGGGCCTGGGGGTCCGTCGCAATTTAACATGCCCCCCAATTTCAGTCCCCCCATGCACCCTGGACCGGCGTTCAACCCCATGCTGTCCCCTGGTGGTATGGGGGGTCCTGGAGGAGGGGGGCCACCGCACCCTCGGTTTGGGATGCCCCCGCAGCAACAGCACGGACAGGGTGGGCACCCCTTCAACAGCCCCCCTTTAACAGGTGGCGGAGGCCCCAGGGGACCCCCACATGGCCCCATGAACCCCATGGGGGGCATGCCTGGAGGGATGAACATGATGGGGGCCATGGGAGGTGGCCCAGGAGGAAACATGGGAGGGATGCCAAGTCTACCCCCTCAAGGACAGTTCCCTCCTTCACAAGATGGGCCCTACCCAGGACCCAGCCCCCCGGGTCCAGGAAATGAGGAGGGGAAGAACTTTGGTGGAGGTGGGCCCCAGTCTGGGCCTCCTCAGCAGCCTAACTTAAACTCCTCTGGTCCCCCAGGTCCCAACAATACTCCCCCCGGGCCTCCCAACTCTGGCCCTCCCCAGCCTGGAGGAGGCTTCCCTGGACACCCTGACCAGCATCCCAACCCCAACACAACTGGTCAGCCCCCCTCAGCACCGCCCCAGCCCAACCCTAACTCCTCCCCCACCGGCCCCCTCAACGGATCCCAGCCTCAGCAGGTGCCGCCAAATCAGCTGCAGGGGCCCAACTCTACCAACACCCCCTCTTCCAATAACCCGCCCCAGCAGCAGTCGACTCTGCCCAATTCTGCCCCTGGCTCCACCCCTTACAACCAGCAGAACAACGCTCCTGGTGGATGCCCCATGCCCAATGCTCCCCCCAACTCTGCCCAGAACAACTTGACCAACAGCGGGGGCAACACCCCCGCCAGCAACCCTAACCCCCCTTCCAACTCCACTCCCAACACCCAGTCTCCGCTGCCCCCCGGCCCCGCCAACACTTCCACGGGCCCAGGCGTCGGTCCAGGAAAGCTGGGGGGCCCGGGAATGGTGTTCCCCTGTGGCTTCTGTCTGTCAGAGGTGCACGACGACCAGGATGCCATCTTGTGCGAGGCTTCGTGCCAGCGCTGGTTCCACCGTGACTGCACGGGCCTGACTGAGCCGGCCTACGGGCTGCTGACCCGGGAGAGCTCTGCCGTCTGGGCCTGCGACTTCTGCCTCAAAACCAAGGAGATCCAGGCTGTGTACGTCCGCCAGGGCCTGGGCCAGCTGGTGGCTGCCAATGAAGGCTGAGGAAcaggaggcggaggaggagagactgggagggcTGCAGGGGAAGAGACAATGACTGCTCTGATCTCTCTCGCCCAACCTTATCTGATAAGCTGTTTACAATGCCCAAATCTCTCTTTTACATACTCAAAAACACTTACACCCACTGGACAGTTTATTGGGTACAGCGCCTCTTTCACGAAAACGGATCGCTCCTGTAGACAATGAGTcatgtggccgtggcttgctatgtAAAGCAGGCAGACCGGCATCGAgtcattcagttactgttcgattgaatgttagaatgggcaacACAAGTGACCTAAGCAAGTGACTTTGAGCGTAGTATGATTgtcggtgccaggcgcaccgggtCCAGGATCACAGActccctcctgggcttttcacgcacaacagtgtctagggtttaccaagAATGATGTGACAAACAAAACATCCAGAATTGTGCAAGCTATCAGGTGggccacaaacaaacaaataaataaccGTGCAGTACAACAGTGAAGTGCAGAATGGCATCTCGGAACCCACAACTCATCAATCCTTGTCAAGGATGGGCTGTTGCAGCAgatgaccacaccgggttccactcctatcagctaaaaacaaaaaGAAGCGACTTCAGTGGGCACGTGATCACCAACATTGGACAattgagtggaaaaacattgcatggaacattcaggctgttctggaagcAAAGCTGTgtccgacccggtactagatgtgtgtacctaataaactggctagTGAGTACATGAAGCACTTTTAGTGACTCTTTTGGACTGAACAACTGATTTCCCCGTACATGACAATGCCCTGTCCacattatcccccccccccagacatttGGCCTGGAGACAAGCAAAGCACTGACACCAACACACTACCTCATACTTTGTGACTGACCAACACAGACGcctcactgacagactgactgaccccTGGTGGGAGCGTGGTCatcttacacacacatacatacctgGTTTTGACCCAGAGCAGATGAATCCAAAGGAGACCCAGGCCACTCCTCAATGTACTAGACTGTCCTCCCACCCACACCTCCAGAGAGAAAAGAATGGCGCCACAGAAAAATGTGTAGATATGCAGCCTGAACGTTTGCCCAAAACACGCCTCTGTCCATCTTGGAATGCAGGAGAATCAACCAatgaacaaaaaaatgtaattatataATGTCTTGGTTATGTCAATGGACTTTTTGTTTTTATACATTGAATCAACCGTTTTATATCTCCTTCACTGGACACAGAAGTTGTGATATCAGTGCTGTTGGATGGTGTTGGCATAGCTACAAGTAGTGACATCATGGTCATATCCAATGTGTGTACTAGTCTTTTGGGAATGCATGTGAACAAATGCAGTAACTTTGTCCAatctgttttttttgtaatttgGTCTCTGCTAGAGGCCTCGAAGTAGACCAAATAACAGAGCAAATAATATCAATGTTCATATTATTGTCATGTCAGGTGTTTGTAATTTtccttcttaaaaaaaaaaaaaaaacattctgtcCAAGTTGCCTTTTTCTCACCCCATTCATTTTTTTTGTACTGCTATCTGCTGTATAATAATGTGCTCTACTCAGGCGCCCTCTGGTGGGAACCTGAGGCACTGACCAGCCCACACAGTGTGGGAAAGATACTGAACTCTGAAGAAGTAAAGAGAATTGTTTTTGTA
>TU1760029
CGGCGGCGATAGTAGGCCGTGATTAATATGgcaaaatgtgtgtgtttgtttcaatTATTATTTTAAGCTGTACCACAAAAGAAAGCATATACCGTGTGAGGACTGGTATATCGGCAATGACACACTGGAGAGGTTCATATTAACGACTACAGAGCAAGCAACGGAGAAAGGCACCAACAGTCATATTAATGGCTGCCGAATCGGGGAGACTCCTGGCGGGACAAGGCCAAGGAAAGCGAGGCAAAGGTGGACAAATGAAGAgcccagagaagaagaagaggaaatcCAATGCTCAGGGGCCTGGTGGCGCGTTCTCCCACCTCTCTGAGTTTGCGCCCCCTCCCACCCCCATGGTGGACCACCTGGTTGCCTCCAACCCTTTTGACGATGACTTTGGCCCCCCGTCACTGCCGTCCCGACCCGGTGGGGCTGGAGGTCCAGGAGGGGGTCCCTTCCTCCCCAGCCCCGgggcaggtggaggaggagggccgTATGGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571594.2 False 3645 mRNA 0.55 4 31008756 31014201
XM_021571595.2 False 4251 mRNA 0.52 3 31008756 31014201
TU1760029 True 498 TUCP 0.56 4 31011878 31014176

Neighbor

gene id symbol gene type direction distance location
cgnb LOC106588167 coding downstream 2900 30959174 ~ 31005856 (-)
LOC110495992 LOC106588166 coding downstream 53557 30911827 ~ 30955199 (-)
ubap2l ubap2l coding downstream 111881 30803183 ~ 30896875 (-)
LOC110495990 hax1 coding downstream 206170 30788111 ~ 30802586 (-)
LOC110496794 LOC106588158 coding downstream 334207 30661601 ~ 30674549 (-)
LOC110496925 LOC106588148 coding upstream 34389 31048590 ~ 31051663 (-)
LOC110495997 LOC106570110 coding upstream 44820 31059021 ~ 31075756 (-)
LOC110495999 NA coding upstream 62975 31077176 ~ 31085443 (-)
LOC110495998 LOC106588170 coding upstream 76454 31090655 ~ 31096283 (-)
LOC110496926 NA coding upstream 444636 31458837 ~ 31459087 (-)
G1537696 NA non-coding downstream 97045 30909411 ~ 30911711 (-)
G1537700 cssa27h1orf43 non-coding downstream 102902 30905560 ~ 30905854 (-)
G1537686 NA non-coding downstream 116708 30891768 ~ 30892048 (-)
G1537617 NA non-coding downstream 222546 30784937 ~ 30786210 (-)
G1537631 NA non-coding downstream 287083 30721403 ~ 30721673 (-)
G1537743 NA non-coding upstream 8433 31022634 ~ 31023078 (-)
G1537744 NA non-coding upstream 12432 31026633 ~ 31026865 (-)
G1537745 she non-coding upstream 14172 31028373 ~ 31029152 (-)
G1537747 NA non-coding upstream 16593 31030794 ~ 31031210 (-)
G1537748 NA non-coding upstream 17249 31031450 ~ 31033722 (-)
G1537091 NA other downstream 405364 30602716 ~ 30603392 (-)
G1537022 NA other downstream 483383 30519892 ~ 30525373 (-)
G1536703 NA other downstream 723994 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2656138 28241494 ~ 28368147 (-)
LOC110496004 LOC106588173 other upstream 501910 31492852 ~ 31524883 (-)
LOC100136047 LOC106605923 other upstream 671551 31684840 ~ 31692733 (-)
G1538595 NA other upstream 700305 31714506 ~ 31715181 (-)
atp5if1a LOC106588193 other upstream 1043110 32057280 ~ 32058819 (-)
G1539348 NA other upstream 1547525 32561726 ~ 32562120 (-)

Expression


Co-expression Network