LOC110496925 (LOC106588148)


Basic Information

Item Value
gene id LOC110496925
gene name LOC106588148
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31048590 ~ 31051663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572935.2
AGCCGCTGTCCGACTCTCTCCTCATCcgtctttccttgtctctctctctctctccctcttcaccaAAGACAAAGGAGGCCCTCCATCAGCACTCCATCAGTCTTTCCAACGAAATCAACTCAAGAAGATTCCAAGATGCCGGACACAATTATGTCCAAGGAACCCTCTTCCAACCTGGAGAATGCCATGCAGATGCTGATCAAAACCTTCCACAAGTACTCAGGGAAGGAGGGTGACAAGTATACTCTGAGCCGGGGAGAGCTGAGAGAGCTGTTAACAGAGGAGCTGGGAAGTTACCTAGGGAACGCCCGGGATGGAGAAGGGGTTGAGAAGGTGATGAACGACCTGGACGCCAACAGCGACGGTGAGGTGGACTTCACAGAGTTCATCATCCTGATGGGAGCCCTGACAGTGGCTTGCAACGACTTCTTCATGGAATACAAGCCCGAGAAACTTGTCCACACACCCTTTGAGAAAAAGGAGGCAACATCGGAGAagaaagagtgaaggaaaaaagggaggagtggggagggactgggaggagggaagggggagatggATGGAAAGGGGAAATGAACTGTGGAGCAACAGTAAAAGGGTACAATTGATGGTTGTATGGTCATGTTATGCAAATTTCTTAACCGTGCAAATGAAATGTGTGAAAAGAGGCTGAGGGAACTTCACTTCACTAAGTAAGGTTTCGCTGATGGAAGAACAGTGTGTTCCATCTGCAACTATCCAAATACTTTTCATACCATAGTTAAGGCACAGATCCGGAGTCAGTTACTCTGTGTCCTCAAATGCATGAGTGGCACTGTATACAGTAGGGGTCAGCAACAGGCGTCCTGTGGCATGCGAGTGATTTTCTTTGCCACCCCTTTTTGGTGAAAAATATTTTCTGGTGATTTTACCTTTTtactgtaaaatcaccaggaattaaGCAAAAATGTGTttcatttaggaaatctgttcaagTATTCACAcaaagttattttttttaaatatgtgatcgtgtctcaatgtaatcaatgtATGAAATGATTAaaatacaatctctttttgggcttagttgtggtACATTTGCAGTGTACAGATTATTTGAATTATGTTCCAGCCCTCTGACCATCCTCTCCAACAAAAATCAACCcccggctgaatctagttgcctacccctggtATACAGGGTAGTATGTGTGAGATCAGTTGTGTTCTCTATTCAGTCTCAAATTCCAAATCAACTGTTTAAATGATTTGGATGCATATTCAGGATGGATTTAattgaaaatatgaattattTCAGTGGATGTTATTGTAACACACAACCACCAATGGAGTCAGATCGGGGCCTAAAGCACAACAGGGTGATACTGTCATGAATATAAAGATTATATCATAGATAATAAATATCTTAAATATTTAGAATAGGTTATGTACTCAGAGTTGAACATTTTAATATAATTTACATTTCTTTGCACATATTTTGTAATCTGTTTTTGGTAATTACCAATGTGTTCTTCCAAACATTAAACATGACATTTAATCA

Function

NR:

description
protein S100-A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572935.2 True 1543 mRNA 0.42 4 31048590 31051663

Neighbor

gene id symbol gene type direction distance location
LOC110495994 LOC106588168 coding downstream 34389 31008756 ~ 31014201 (-)
cgnb LOC106588167 coding downstream 42734 30959174 ~ 31005856 (-)
LOC110495992 LOC106588166 coding downstream 93391 30911827 ~ 30955199 (-)
ubap2l ubap2l coding downstream 151715 30803183 ~ 30896875 (-)
LOC110495990 hax1 coding downstream 246004 30788111 ~ 30802586 (-)
LOC110495997 LOC106570110 coding upstream 7358 31059021 ~ 31075756 (-)
LOC110495999 NA coding upstream 25513 31077176 ~ 31085443 (-)
LOC110495998 LOC106588170 coding upstream 38992 31090655 ~ 31096283 (-)
LOC110496926 NA coding upstream 407174 31458837 ~ 31459087 (-)
LOC110496004 LOC106588173 coding upstream 441189 31492852 ~ 31524883 (-)
G1537759 NA non-coding downstream 3877 31044437 ~ 31044713 (-)
G1537751 NA non-coding downstream 11022 31037052 ~ 31037568 (-)
G1537748 NA non-coding downstream 14868 31031450 ~ 31033722 (-)
G1537747 NA non-coding downstream 17380 31030794 ~ 31031210 (-)
G1537745 she non-coding downstream 19438 31028373 ~ 31029152 (-)
G1537737 NA non-coding upstream 4397 31056060 ~ 31057140 (-)
G1537824 NA non-coding upstream 145989 31197652 ~ 31252779 (-)
G1537844 NA non-coding upstream 174590 31226253 ~ 31230295 (-)
G1537931 NA non-coding upstream 304540 31356203 ~ 31358722 (-)
G1537956 NA non-coding upstream 335336 31386999 ~ 31387202 (-)
G1537091 NA other downstream 445198 30602716 ~ 30603392 (-)
G1537022 NA other downstream 523217 30519892 ~ 30525373 (-)
G1536703 NA other downstream 763828 30284372 ~ 30284762 (-)
LOC100136047 LOC106605923 other upstream 634089 31684840 ~ 31692733 (-)
G1538595 NA other upstream 662843 31714506 ~ 31715181 (-)
atp5if1a LOC106588193 other upstream 1005648 32057280 ~ 32058819 (-)
G1539348 NA other upstream 1510063 32561726 ~ 32562120 (-)

Expression


Co-expression Network