LOC110495998 (LOC106588170)


Basic Information

Item Value
gene id LOC110495998
gene name LOC106588170
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31090655 ~ 31096283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571599.2
CATCAGTGAAAGAAGGGGTCTGTATCCATTACCTGACACCAATTTCACCTGCGCGCGTCAATCAAGCCGTTTTCGTTACACAACACATCACTTTGGTTGGTTGTTCTTTTTAAGGGAGGTAACGCAAACGGCCATATTGACATCCCATTGGAAAACACTGTGCAGCATCGGAGTGACGCAGCTTGGAATTCCCAAATATCCGATGATCACGACCGGAATGCTGCATGTAAAATAAAATTACGAGGACTATCGGAGCTAAAACGGTGAAATTGAAGTGAAATAAGCGGGAATACGTTGTAGTTTCTGTGCTGAGCCTCAAGGGGGCGATGTCTGACAACAGCAGCAGCACAGGCAGCAGCCGCAGCGGATCCTTGACCACCAGTTGGACCATGCTGTCCCCAGAGGAAGCTGCTGAAATTGTTGATCCTGTGGATGGTGGGACTGAGTGTCTTTGTGATGTCCCTAGTCTGTCAGAGGAAGTCGCAGGGGCCACTGAAGAGTCTAAGCCGAGTGACCAGGAGACTCCAATAGAAACAGTGTTGTCAGAGAAGGGCCAACAGGAAATGGCTCCTGATACCTGTGAGGGCCCTGTCCCCTCCAGACCTACCCTGTTAAGCCCATCCCCCACTAGCGGTGTGCCCCTTGACCATGACCTGGAGAGTCAACCTGAACCCCCCATCATCCATTCTATGGTAACCAGCTCCCCCACTGACAATGAGCAACTCGCTGCCATGCCCTTTGTCACTCATGTCGACCTGGTTGTGCCATTGGATGCATCCTTCACAGAACCACCCCCCTCAGAGGTTGAGCCTGAGTTGAGCCCCGTCCCTGAGAGCTCTCCTCTTGATACCCACACTGATACAGGCCCTGTACCTGAGAGTATTGCCCTAGAGACTAGTGCCCCTAGTGCCAAACACGACCTAAGCATTCACACAGAGACTCCCACCCCAACGGGCCCCCCATCTGACACTGTCACTGATATTGGCCCTGCCCCTGATAGTCCTCCTCCAGATACCATTGGTTCAGAGGATGCAGCACAAGCGCCATCACTGGAAACGGGGGAGACAGAATTACCTGAAACCGTCACCAATATACCAAAGGAAAAAGAATCTCCCAGTAGCTTTGACTTTGGAAGAGCTGACACGAGTGCTGAGGAAGGAAATGGTCTGAGGAGGAGAAATGTGGCACCAACAATGACATCggaggaggaagatgatgatgatgaggaggtgGAGTTCAAACTggcagagaggaaaggggggaagaAGGGCTTCTCTATGAACACATGCATTGTGGCAGCCCTGGTCCTGCTCTGTCTAGGGTCCCTCTTCCTTTCCGGTTATCCTAAGTTAAAATCACCAGTGGCGTCATGGTGACATCcctaagcagtttccttcctgtccaacagctcagttcagaaggacgactgcatctttgatgtgtcgggatggtttaatacatcatctacagcataattattaacttgaccatgcttaaagatatattcaatgtctgatttgttattgttatccAGCTACCAGTCACTGCCCTTCATGAGGCTTTCAAAAGCTCCCTCGtatttgtagttgaatctgtgcttgaaattcaatacttgactgaggcaTTTTACAGATGTTGTAGGGGACAAGGGATGGAgtggtcattcaaaaatcatgtcagcCCCTATTATTCCACATGGAGTCCATAtaacttatgtgatttgttaagccaaagGTTTTGAGTTATGACATTTTTCTGAATTTGTTTAAAAAACTTTGACATTGACTTTTTTGTGTAGATCAATTTGTAacctttttttattatttatatataacaCTACCAttaaagtttgaggtcacttagaaa

Function

NR:

description
uncharacterized protein LOC110495998 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571599.2 True 1866 mRNA 0.47 7 31090655 31096283

Neighbor

gene id symbol gene type direction distance location
LOC110495999 NA coding downstream 5212 31077176 ~ 31085443 (-)
LOC110495997 LOC106570110 coding downstream 14899 31059021 ~ 31075756 (-)
LOC110496925 LOC106588148 coding downstream 38992 31048590 ~ 31051663 (-)
LOC110495994 LOC106588168 coding downstream 76454 31008756 ~ 31014201 (-)
cgnb LOC106588167 coding downstream 84799 30959174 ~ 31005856 (-)
LOC110496926 NA coding upstream 362554 31458837 ~ 31459087 (-)
LOC110496004 LOC106588173 coding upstream 396569 31492852 ~ 31524883 (-)
LOC110496005 s10a4 coding upstream 434121 31530404 ~ 31535376 (-)
LOC110496009 LOC106588178 coding upstream 532580 31628863 ~ 31654236 (-)
LOC100136047 LOC106605923 coding upstream 588557 31684840 ~ 31692733 (-)
G1537737 NA non-coding downstream 33515 31056060 ~ 31057140 (-)
G1537759 NA non-coding downstream 45942 31044437 ~ 31044713 (-)
G1537751 NA non-coding downstream 53087 31037052 ~ 31037568 (-)
G1537748 NA non-coding downstream 56933 31031450 ~ 31033722 (-)
G1537747 NA non-coding downstream 59445 31030794 ~ 31031210 (-)
G1537824 NA non-coding upstream 101369 31197652 ~ 31252779 (-)
G1537844 NA non-coding upstream 129970 31226253 ~ 31230295 (-)
G1537931 NA non-coding upstream 259920 31356203 ~ 31358722 (-)
G1537956 NA non-coding upstream 290716 31386999 ~ 31387202 (-)
G1537998 NA non-coding upstream 326563 31422846 ~ 31423074 (-)
LOC110495992 LOC106588166 other downstream 137347 30911827 ~ 30955199 (-)
G1537091 NA other downstream 487263 30602716 ~ 30603392 (-)
G1537022 NA other downstream 565282 30519892 ~ 30525373 (-)
G1536703 NA other downstream 805893 30284372 ~ 30284762 (-)
G1538595 NA other upstream 618223 31714506 ~ 31715181 (-)
atp5if1a LOC106588193 other upstream 961028 32057280 ~ 32058819 (-)
G1539348 NA other upstream 1465443 32561726 ~ 32562120 (-)

Expression


Co-expression Network