LOC110496005 (s10a4)


Basic Information

Item Value
gene id LOC110496005
gene name s10a4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31530404 ~ 31535376 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571617.2
GTCTGTGgccgtgtcagtgtgtgttttgtctgtgtttacatgttttgttgttttccCGTTGTAGTTATAGCCTCTGACATTTTATAGGCTAACGATGATGCATGCAGACAAatctccccctcaccctccttGTGGCGGGGcagaaataccccccccccccctttcagttTCTATCCTCTCCGGGAGCATCGCTCCGATAACCATGGAAGAAACCTTCCTATCATGGCGGCTAGATTCCAGGTGAAGGATCACCGTCAGTCTCAGACACCATGGCACAGCCCACACCCCTGGAAACCTCCCTGGGAGCCCTCATCATGGCATTCCACAAGCACGCTGGCAGTGGAGATGCTAAGACCCTCAGCAAGAAAGAGCTAACTAACCTCATCAAGGAGGAGTTGCCCAACATAACTGGGAAGGGTGGTCCTGACGTGGGTGAGCTGATGACAATGCTAGACCATGACGGTGATGGCGCTGTGGACTTCAAGGAGTACATCACCCTGATTGAATCCCTTGCCTGCATGTGCAACTGCTTCCTGGAAGGGAAAATGTATCTTCTATCTGCTTTCTGCAGTGTATTGCATTAGGCCTGCATGTCACATTAATAATGTCTCATATCTCATTGAGTAAATTGCATACACGCCTTCCTCGGTGTCCACGCGCATGCCCGTATGCACACATAGATGCAAAGAGTTGCATAACTCTGCAACAATTATAAGACTGATCCTCAAATACATGCACCCAGGTGGATTCTCTTGTCAGAAATTGGCTCAATTGGTAGTGCATGGCGCTTGCTATGCCAGGGTAGTGGGATTGATTCCGGGTACCATCCGTACGTAAAATATatgcatgactaagtcgctttggataaaagcgtctgctaaattacatatattattatatattaggCTATTAAGATCTAAGGAATGCTGCTACACAGAGCATGTGATATAGTAAACACGATGTGTAGGCTATTTATTTACTGTGTTGTGCATGTACAGTAATTCAATCAGTCTGTTTGGAATTATTGATATGTTTTGTCTTTAATGCTAATAAATGGGGAAAAGAACCAACCGAAGATT
>XM_021571615.2
GTAGCCTAAAATATCAACGTAATTGAGGCCACTTTAACAGGGTTTATTAGGCTACACATGCTCAGGCCATGTAGTCAGTTTACCCCCACCCCATTATATTACAGTGTAACCAGCCAGCAACAGCAGAGACAGAAACCCCTGAATCGTGGTAGATTTGCCTAAATTGATGCGATTCGGTAAAGGAAGGGTGGGAGACGTCTGAGCGGGGAGGATCCCCCCAAGCGCATAAtctggcagcatttggaattgTACATTTTTGTGATCGGATGATCGTTGTGCCTACATTTGATTTCGTTACAAATGTATTTTCTCTCTTCCATTTGGCTTTATTTTTCTATTGGGTTGCAGGCCTATATTGTAGTCTATAGCCTTATTTGCTTGCGTCCAGTTCCAACCTTACTGCGCAAAACAGATGCCTTATTAGGGCAGGGCCTACTTCAGCTAAATTAACTGATCTTCCAGGATTTATGAATATCTATTTTGCAATATTTGCCTTTATGGCACCTGTTGTTATTGTTATGATAACGGTAGGGGTATCATGTGTAATTCATCGAAGGAGGCACAGTCGGATTGAACGCTCGCTTCAATGATGGACGCTCTGGATCACCGTCAGTCTCAGACACCATGGCACAGCCCACACCCCTGGAAACCTCCCTGGGAGCCCTCATCATGGCATTCCACAAGCACGCTGGCAGTGGAGATGCTAAGACCCTCAGCAAGAAAGAGCTAACTAACCTCATCAAGGAGGAGTTGCCCAACATAACTGGGAAGGGTGGTCCTGACGTGGGTGAGCTGATGACAATGCTAGACCATGACGGTGATGGCGCTGTGGACTTCAAGGAGTACATCACCCTGATTGAATCCCTTGCCTGCATGTGCAACTGCTTCCTGGAAGGGAAAATGTATCTTCTATCTGCTTTCTGCAGTGTATTGCATTAGGCCTGCATGTCACATTAATAATGTCTCATATCTCATTGAGTAAATTGCATACACGCCTTCCTCGGTGTCCACGCGCATGCCCGTATGCACACATAGATGCAAAGAGTTGCATAACTCTGCAACAATTATAAGACTGATCCTCAAATACATGCACCCAGGTGGATTCTCTTGTCAGAAATTGGCTCAATTGGTAGTGCATGGCGCTTGCTATGCCAGGGTAGTGGGATTGATTCCGGGTACCATCCGTACGTAAAATATatgcatgactaagtcgctttggataaaagcgtctgctaaattacatatattattatatattaggCTATTAAGATCTAAGGAATGCTGCTACACAGAGCATGTGATATAGTAAACACGATGTGTAGGCTATTTATTTACTGTGTTGTGCATGTACAGTAATTCAATCAGTCTGTTTGGAATTATTGATATGTTTTGTCTTTAATGCTAATAAATGGGGAAAAGAACCAACCGAAGATT
>XM_036952492.1
ATTGAAACAGTAGAAAAACTACTTAAACTACTTAAACAAATATAGTAGGCGACAGTATGAAGTTTGGCataaactgcttctccaatagaaatcccacTTCTGATACCAGTGTACCGAACGGcggggaagggaagagaaaggcAAACACACCCTGGTGCATGCCTGGGTTGAGAGGCAAACACCCTCGCGCTAATAGGGTTAAGTCACTCGGTCGGAATTGTAACATGGCTCATATACTGGAGGATCGCTACAAAATGTTTTATCTTTGCCGTTAATAAATTGACAAAAGACCCAACGACGTTTGTAAAGTGTTTTTTTGGCACGCGTTGATGAATATTTGCAATCCCACTTGACAGTGGCGAACCCACTGTTTTTTCTCCGGTGAACAGCAGTAATTTATTTTGTAGCCTAAAATATCAACGTAATTGAGGCCACTTTAACAGGGTTTATTAGGCTACACATGCTCAGGCCATGTAGTCAGTTTACCCCCACCCCATTATATTACAGTGTAACCAGCCAGCAACAGCAGAGACAGAAACCCCTGAATCGTGGTAGATTTGCCTAAATTGATGCGATTCGGTAAAGGAAGGGTGGGAGACGTCTGAGCGGGGAGGATCCCCCCAAGCGCATAAtctggcagcatttggaattgTACATTTTTGTGATCGGATGATCGTTGTGCCTACATTTGATTTCGTTACAAATGTATTTTCTCTCTTCCATTTGGCTTTATTTTTCTATTGGGTTGCAGGCCTATATTGTAGTCTATAGCCTTATTTGCTTGCGTCCAGTTCCAACCTTACTGCGCAAAACAGATGCCTTATTAGGGCAGGGCCTACTTCAGCTAAATTAACTGATCTTCCAGGATTTATGAATATCTATTTTGCAATATTTGCCTTTATGGCACCTGTTGTTATTGTTATGATAACGGTAGGGGTATCATGTGTAATTCATCGAAGGAGGCACAGTCGGATTGAACGCTCGCTTCAATGATGGACGCTCTGGTTCGATCACCGTCAGTCTCAGACACCATGGCACAGCCCACACCCCTGGAAACCTCCCTGGGAGCCCTCATCATGGCATTCCACAAGCACGCTGGCAGTGGAGATGCTAAGACCCTCAGCAAGAAAGAGCTAACTAACCTCATCAAGGAGGAGTTGCCCAACATAACTGGGAAGGGTGGTCCTGACGTGGGTGAGCTGATGACAATGCTAGACCATGACGGTGATGGCGCTGTGGACTTCAAGGAGTACATCACCCTGATTGAATCCCTTGCCTGCATGTGCAACTGCTTCCTGGAAGGGAAAATGTATCTTCTATCTGCTTTCTGCAGTGTATTGCATTAGGCCTGCATGTCACATTAATAATGTCTCATATCTCATTGAGTAAATTGCATACACGCCTTCCTCGGTGTCCACGCGCATGCCCGTATGCACACATAGATGCAAAGAGTTGCATAACTCTGCAACAATTATAAGACTGATCCTCAAATACATGCACCCAGGTGGATTCTCTTGTCAGAAATTGGCTCAATTGGTAGTGCATGGCGCTTGCTATGCCAGGGTAGTGGGATTGATTCCGGGTACCATCCGTACGTAAAATATatgcatgactaagtcgctttggataaaagcgtctgctaaattacatatattattatatattaggCTATTAAGATCTAAGGAATGCTGCTACACAGAGCATGTGATATAGTAAACACGATGTGTAGGCTATTTATTTACTGTGTTGTGCATGTACAGTAATTCAATCAGTCTGTTTGGAATTATTGATATGTTTTGTCTTTAATGCTAATAAATGGGGAAAAGAACCAACCGAAGATT

Function

NR:

description
protein S100-A1-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571617.2 False 1079 mRNA 0.46 3 31530404 31534355
XM_021571615.2 False 1434 mRNA 0.44 3 31530404 31534973
XM_036952492.1 True 1841 mRNA 0.43 3 31530404 31535376

Neighbor

gene id symbol gene type direction distance location
LOC110496004 LOC106588173 coding downstream 5521 31492852 ~ 31524883 (-)
LOC110496926 NA coding downstream 71317 31458837 ~ 31459087 (-)
LOC110495998 LOC106588170 coding downstream 434121 31090655 ~ 31096283 (-)
LOC110495999 NA coding downstream 444961 31077176 ~ 31085443 (-)
LOC110495997 LOC106570110 coding downstream 454648 31059021 ~ 31075756 (-)
LOC110496009 LOC106588178 coding upstream 93487 31628863 ~ 31654236 (-)
LOC100136047 LOC106605923 coding upstream 149464 31684840 ~ 31692733 (-)
ash1l LOC106588182 coding upstream 187138 31722514 ~ 31769106 (-)
LOC110496013 LOC106588183 coding upstream 236236 31771612 ~ 31777330 (-)
LOC110496014 LOC106588184 coding upstream 243888 31779264 ~ 31784592 (-)
G1538459 NA non-coding downstream 3871 31526332 ~ 31526533 (-)
G1538423 NA non-coding downstream 69819 31460386 ~ 31460585 (-)
G1538417 NA non-coding downstream 74959 31454975 ~ 31455445 (-)
G1538416 NA non-coding downstream 75441 31454635 ~ 31454963 (-)
G1538412 NA non-coding downstream 80730 31449411 ~ 31449674 (-)
G1538462 NA non-coding upstream 357 31535733 ~ 31551223 (-)
G1538475 NA non-coding upstream 19369 31554745 ~ 31554966 (-)
G1538482 NA non-coding upstream 26736 31562112 ~ 31562408 (-)
G1538487 LOC106588175 non-coding upstream 33577 31568953 ~ 31571449 (-)
G1538490 NA non-coding upstream 40939 31576315 ~ 31576538 (-)
LOC110495994 LOC106588168 other downstream 516228 31008756 ~ 31014201 (-)
LOC110495992 LOC106588166 other downstream 577096 30911827 ~ 30955199 (-)
G1537091 NA other downstream 927012 30602716 ~ 30603392 (-)
G1537022 NA other downstream 1005031 30519892 ~ 30525373 (-)
G1538595 NA other upstream 179130 31714506 ~ 31715181 (-)
atp5if1a LOC106588193 other upstream 521935 32057280 ~ 32058819 (-)
G1539348 NA other upstream 1026350 32561726 ~ 32562120 (-)
G1540148 NA other upstream 1364202 32899578 ~ 32936569 (-)

Expression


Co-expression Network