LOC110496006 (LOC106588175)


Basic Information

Item Value
gene id LOC110496006
gene name LOC106588175
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31568375 ~ 31572239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571618.2
AGGCTTATGTCTATTTTTCTTTACCTCACTCTCAAATTTCATTGTTTAGCCCACCTCGTTTATTCTGTGTATAAGTGGGATATTAATTAAATGCAGGGCTATTAATCGtttagagagaaaaaaatatgttgAGTTAGTCATTTTAATCGTTTTTATTACACAGAGCAAAATATTAGCTTGACTATGTTTGATAGGTTTACCAAGGTAACCTAGTGTCATAGTCTTACTGTCTTGCTCAATATCCACGGTATCATTACTTCCTTCACTGAAGGCAGCGCAGACAGGGCGTCGCCTGTCTATAAATTCTCAGGCGTGATATTTCTCAACTCTGCACAATTCAACCTCTTCTCAATCGCCAACTCAACACTCGTGAACGACCTGCAGCCATGCCGTCAGATCTGGAACGTGCCATGGAGTCCATGATCACCGTGTTCCACAAGTACGCTGCTAAGGAGGGCAGTGGCAACACTTTGAGCCGCCGTGAGCTCAAGGACCTGATGGAGAACGAGCTCTCTGGCTTCCTCAAGTCTCAGAAGGACCCAGCCACAGTAGACAAGATAATGAAGGATCTGGACTCTAATGGTGATGGAGAGGTGAACTTTGAGGAGTTTGTTTCTCTAGTTGTGGGCCTGTCCATCGCCTGTGAACAGTGCTACCAGATGCACAAGAAGAAGATGGGGAAGTGAGGgatgaaaagaggagagaaggaatggGGTGCTGAGTAGAGAAGGGTTCTAATTTTCACGTTTGTAATTGTCACACTGTCCATTAaacacaaagaccaag
>TU1760424
ATATAGAggatagggtgccaattgggacactACTATAGGTCTGGCCTCTCACGTCATCATGACCACTCCCTGAGTGATTACAAATCACACAGGTAAAAGTCTCACTACATGTCGTATCAGGGACGGTCACCATCATAAATTCTGGCTACAACTGCTGGGCTAATTATTAACACTCCGATCAACTGTAATGATAGTGCTTGCTCAAACAAGTTGTTTGTCATTACAATTTATGCTAATTGATCATTTACAGTAGGCTTATGTCTATTTTTCTTTACCTCACTCTCAAATTTCATTGTTTAGCCCACCTCGTTTATTCTGTGTATAAGTGGGATATTAATTAAATGCAGGGCTATTAATCGtttagagagaaaaaaatatgttg
>TU1760344
CTGAAGGCAGCGCAGACAGGGCGTCGCCTGTCTATAAATTCTCAGGCGTGATATTTCTCAACTCTGCACAATTCAACCTCTTCTCAATCGCCAACTCAACACTCGTGAACGACCTGCAGCCATGCCGTCAGATCTGGAACGTGCCATGGAGTCCATGATCACCGTGTTCCACAAGTACGCTGCTAAGGAGGGCAGTGGCAACACTTTGAGCCGCCGTGAGCTCAAGGACCTGATGGAGAACGAGCTCTCTGGCTTCCTCAAGTCTCAGAAGGACCCAGCCACAGTAGACAAGATAATGAAGGATCTGGACTCTAATGGTGATGGAGAGGTGAACTTTGAGGAGTTTGTTTCTCTAGTTGTGGGCCTGTCCATCGCCTGTGAACAGTGCTACCAGATGCACAAGAAGAAGATGGGGAAGTGAGGgatgaaaagaggagagaaggaatggGGTGCTGAGTAGAGAAGGGTTCTAATTTTCACGTTTGTAATTGTCACACTGTCCATTAaacacaaagaccaaggaggtgTTGTcattatttttgtgtgtgtgtttgtgcgtgtgtgtgtgtgctaagcaAGCAGCGTGAAGTCCTTTGTGTAAAGTACTTCACGCTACTTGTTTAGcacgcgtgtgtgcatgtgtgtgtgtgtgagagactgtgagagagacTTTAAAACGTTTTTATATGGTTTTATATGTGTTATAACCAACCTATTGGAGTTTTATCAGAGTAAAAGTATTGAATACGTGTGTTGATAACTGTCTTGAAGACCCCATATCCCAGGGGTATTCAAATCTTACATTACGAGGTCTGCAGCCTGCTGGATTACTGTCATACCTGATAATTAAATGCACCTACCTGGTATCCCAGGCCTAAATTAGTCCTTTATTAAAGGAGAAAAAGTTAGAAATAAAGCATGTTGACATCTGTTGGGATGATTCCTATTCGGAGACAGCTGCCCTCAGAAGAATGCCAACAAGCACATACCATGTCATTTCACAACCTGTGATTTGTCTTATACAAACAATATAAAGCATACCTGGATTTGTCATAGAGGGCAGAGGGAACTATCTTGTGAGCCTGATAAAGATTCCCTTAGCACCACTGAGAGGAATGCTCAGAATGTtcgacagtacagtacacaccctcAGTCCTCATGAACTTTGGTCAGACATCTATCTACATCTTATCTTTATGGTTCAAAAATGTGTAACATTTTGACTGCGAAACACAGTACAGTTGAAAAGGTCTTGATTTTGTCTTGATTTGATTGTATATAACAGAGGCCATCAAAAATAACTATAGGGTG

Function

NR:

description
protein S100-A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571618.2 False 786 mRNA 0.44 3 31568626 31571449
TU1760424 False 382 lncRNA 0.38 1 31568375 31568756
TU1760344 True 1311 TUCP 0.43 3 31568891 31572239
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496003 LOC106588172 coding upstream 125052 31430305 ~ 31443574 (+)
LOC110496002 LOC106588171 coding upstream 209814 31254186 ~ 31358812 (+)
LOC110496001 NA coding upstream 408731 31143125 ~ 31159895 (+)
LOC110496000 LOC106570108 coding upstream 442518 31116914 ~ 31126108 (+)
LOC110495995 she coding upstream 534890 31016526 ~ 31033736 (+)
LOC110496008 LOC106588176 coding downstream 6647 31578096 ~ 31580320 (+)
LOC110496010 LOC106588177 coding downstream 15479 31586928 ~ 31658119 (+)
LOC110496011 LOC106588179 coding downstream 87029 31658478 ~ 31696797 (+)
LOC110496017 LOC106588186 coding downstream 236320 31807769 ~ 31812186 (+)
LOC110496018 LOC106588187 coding downstream 242456 31813905 ~ 31858017 (+)
G1538100 NA non-coding upstream 7070 31561209 ~ 31561556 (+)
G1538098 NA non-coding upstream 10331 31558031 ~ 31558295 (+)
G1538082 NA non-coding upstream 43780 31524477 ~ 31524846 (+)
G1538028 NA non-coding upstream 113241 31454948 ~ 31455385 (+)
G1537999 NA non-coding upstream 145306 31423106 ~ 31423320 (+)
G1538106 NA non-coding downstream 3100 31574549 ~ 31574785 (+)
G1538110 NA non-coding downstream 12299 31583748 ~ 31584010 (+)
G1538141 NA non-coding downstream 73118 31644567 ~ 31644789 (+)
G1538146 NA non-coding downstream 80192 31651641 ~ 31651842 (+)
G1538148 NA non-coding downstream 81964 31653413 ~ 31653816 (+)
G1537251 NA other upstream 740580 30822508 ~ 30828046 (+)
G1536720 NA other upstream 1271280 30297131 ~ 30297346 (+)
G1534495 NA other upstream 2755523 28812829 ~ 28813103 (+)
G1534488 LOC106574337 other upstream 2763953 28804028 ~ 28804673 (+)
LOC110495972 NA other upstream 2833398 28732589 ~ 28735229 (+)
G1538208 LOC106588182 other downstream 182261 31753710 ~ 31754191 (+)
G1539641 NA other downstream 1448779 33020228 ~ 33020544 (+)
G1539671 LOC106582599 other downstream 1487541 33058990 ~ 33059857 (+)
LOC110496797 LOC106570068 other downstream 1884111 33455560 ~ 33458964 (+)
LOC110496006 LOC106588175 other downstream 135 31568375 ~ 31572239 (+)

Expression

LOC110496006(LOC106588175) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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LOC110496006(LOC106588175) Expression in each Bioproject

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LOC110496006(LOC106588175) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20000.
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Co-expression Network