LOC110496011 (LOC106588179)


Basic Information

Item Value
gene id LOC110496011
gene name LOC106588179
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31658478 ~ 31696797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571623.2
TAACTCAACACCTCTAACAATCTCTAGATGGAGCCCTCTCCCTCTATGAACTTGACAATGCAGcatggagatgaggaggaggagcaatATCCCCTCCTTCCATCAAAAGTGGTCCCTCCCCCTCCTGCTTTTGGCATTCAGTGCGGAAGAAACTACTCATGTCAAAAAGGGGGAAATCACTCAGTGTGGCTCGATGGAACCCAGTCATCACCCACCCTCTCATATTACAACGGCTGCCAATATGTGTCACCCTCACCCCGCTCCTCGCCCCGAAGGGGAGACAATGAGGAAAAGGTTAGGGGGAAGGAGGTCCACAAGGAAAAGAGAGGCAAGAAGCCAGCAGAGAATGAACAGAATGCAGGGCACAAAGATCGGATTTGGGGGAGTAAAACCAAAAAGACAAGCCCACAGAGGCGCCAGCAGGACATGACATCCACTCAGTCACCCTACAAAGGACTCCGCATGTCTCAAATGGACTTAAGGGAGACAGAAAGTGGGCCACCCAGTGAAGGAGGTCGAAGGCTAGAGGTCCCATCAATGAAGATGCAGGACCGCCAGAGTCTACCTGAGATCATCATTACAACCAAAGATGACTACCAGCCACATTCCCCCAACCAAACACCCAGTTCTGACAAGAATCACCCGAAATCTGAGGACAAGGGCGCCTATGGTGGAGGTGAGGAGACCAGTGGTGCGCATCACAAGGATGGTGTCCATAACTGCCCTCACAAGAAGACCCAGAGCATCGGTCGTAGGCTGGTCCGCCGAAGGGCGCTGTTTGAGAGGAGGCAGAGGCTGAATGACTGTGCActcgctgtggggatgtttggaGTGGTGGTCATGATCACCGAGATAGAGCTCTCCTGGAGCGTCTACAGTAAGagctctatatactctatggctATGAAGTCTGTTATCAGCCTGTCCTCTCTCATCCTGCTGGGTCTGGTAATTGCCTATCACATCTGTGAGGTGCAGCTCTACATCCATGATAACGGATCAGAGGACTGGCAAATTGCCATGACAACGGAGCGGGTGAGCCTGATCGCCCTTGAGCTGTTTGTTGTGGCGGTGCACCCGTTCCCAGTGGGTCTCCCATTGTCATGGCAAGCCATGTCCCCCACGCTGTCAGAGACGGAGCTGGAGATCGTGCTGGCTCTACCCATGTTCCTGCGACTCTACCTCCTGGGTCGTGCCTTGATGCTGCACAGCCGACTCTACACAGACACCGCCTCGCGCAGCATTGGCGCCCTCAACAAGATCCACTTCAACAGCCGTTTTGTGGTCAAAACCCTGATGACCATCTACCCTGGCACTGTGTTGATGATCTTCAGCGTCTCTCTGTGGCTAGTTGCTGCCTGGGGCCTACATGTCTGTGAGAGACACCACAACTATAAGGACCTGAGCAGTAACTACATGGAGGCCCTGTGGATGGTCTCGGTCACCTTCTTGTCCATTGGTTACGGGGATGTTGTTCCCCACACCTACTGTGGCCGCAGCATCTGTCTACTCACTGGCATCATGggggCTGGTTGCACAGTGCTGGTGGTTGCTGTGGTTGCCAGGAAACTGGAGCTGACTAGGGCAGAGAAACATGTCCACAACTTCATGATGGACTCCCACTTTACAAAAGGGATAAAAATTGCTGCAGCAaatgtactgagagagacttggaTGATCTACAAACACACCAAGCTTGCCAGGAAGAGAGACCACTGCAGAGTACGCATGCACCAGAGGAAGCTGCTACTCGCCATCCACCAGCTGCGTGATGtgaagatggagaggaggaagttGGCTGACCAGGCCAACACGCTTGTGGATCTCTGCAAGATGCAGAATCTGATGTATGACATGCTGTCCGAGGTGAGTGGATTACGAGGGGACCTGGAAACACACATAAACAGTCTGCAGCAGAATGTGGAGGAGCTGAGACAAGGCTTCAGGACCCTGATACCCCTCCTCTCCAGCACCCTCTCCACACAGAACTCTTCCATCCGCCACCTGCTAAGGGAGAGGGAAGAGCAGGCAGACACGGAGAATGGGAGGGCAGGATAGGAAATCCAGGaaagcagaacatcagacagcaaggaagagaggggagcagacaggacagagcGCGAACACAGGAGAAGATCTAGGGGAGGCCCACACAAGACAAACATGGCATATTCCTCTCAAGCCAGAAGTAGTCCTTGCTAAACATTACCTCTCAAAGAAAGTAAAGATGCCACTTCTGACATGTGCTGTGTATATAAATTGTTAAGCCCTGATATGTTCCTATCACTGAAAGCAATCATACAAGCCGCGCTGACCATTCCAGTTAGCAGCTGTGagaggtctttcagtgtattaaGACGCCTACAAACCTGGTTTAGGAGCCCAATGACCGAAGATAGAATGCATCATGACAATGCATACTAACACGCTGGGAAAGAGTGAAGTCATAGACAGGTTTGCACCTACAGTTTAATTTTGTTTCATTTCTAATCTTGATGGATAGACTAACATCCTGGTACTGTGTTATATAACTCACAAACGTTGTGAATATTTAGTCGGAGAAAGGGTTGCATGCTCGTATGTACATGTGTGTAAAATTGTGAAGTGTTGTTCCTACAggggtgttggagggtgtgtaTTTGTTTTTGTATAATTAATTAGGTAGAAATATTGTCCTGTAGCTAATTGACCTTGGAATATGTGATTTATTACCACAAATGCTATAAAATCATTATTTTCAA
>XM_021571624.2
TAACTCAACACCTCTAACAATCTCTAGATGGAGCCCTCTCCCTCTATGAACTTGACAATGCAGcatggagatgaggaggaggagcaatATCCCCTCCTTCCATCAAAAGTGGTCCCTCCCCCTCCTGCTTTTGGCATTCAGTGCGGAAGAAACTACTCATGTCAAAAAGGGGGAAATCACTCAGTGTGGCTCGATGGAACCCAGTCATCACCCACCCTCTCATATTACAACGGCTGCCAATATGTGTCACCCTCACCCCGCTCCTCGCCCCGAAGGGGAGACAATGAGGAAAAGGTTAGGGGGAAGGAGGTCCACAAGGAAAAGAGAGGCAAGAAGCCAGCAGAGAATGAACAGAATGCAGGGCACAAAGATCGGATTTGGGGGAGTAAAACCAAAAAGACAAGCCCACAGAGGCGCCAGCAGGACATGACATCCACTCAGTCACCCTACAAAGGACTCCGCATGTCTCAAATGGACTTAAGGGAGACAGAAAGTGGGCCACCCAGTGAAGGAGGTCGAAGGCTAGAGGTCCCATCAATGAAGATGCAGGACCGCCAGAGTCTACCTGAGATCATCATTACAACCAAAGATGACTACCAGCCACATTCCCCCAACCAAACACCCAGTTCTGACAAGAATCACCCGAAATCTGAGGACAAGGGCGCCTATGGTGGAGGTGAGGAGACCAGTGGTGCGCATCACAAGGATGGTGTCCATAACTGCCCTCACAAGAAGACCCAGAGCATCGGTCGTAGGCTGGTCCGCCGAAGGGCGCTGTTTGAGAGGAGGCAGAGGCTGAATGACTGTGCActcgctgtggggatgtttggaGTGGTGGTCATGATCACCGAGATAGAGCTCTCCTGGAGCGTCTACAGTAAGagctctatatactctatggctATGAAGTCTGTTATCAGCCTGTCCTCTCTCATCCTGCTGGGTCTGGTAATTGCCTATCACATCTGTGAGGTGCAGCTCTACATCCATGATAACGGATCAGAGGACTGGCAAATTGCCATGACAACGGAGCGGGTGAGCCTGATCGCCCTTGAGCTGTTTGTTGTGGCGGTGCACCCGTTCCCAGTGGGTCTCCCATTGTCATGGCAAGCCATGTCCCCCACGCTGTCAGAGACGGAGCTGGAGATCGTGCTGGCTCTACCCATGTTCCTGCGACTCTACCTCCTGGGTCGTGCCTTGATGCTGCACAGCCGACTCTACACAGACACCGCCTCGCGCAGCATTGGCGCCCTCAACAAGATCCACTTCAACAGCCGTTTTGTGGTCAAAACCCTGATGACCATCTACCCTGGCACTGTGTTGATGATCTTCAGCGTCTCTCTGTGGCTAGTTGCTGCCTGGGGCCTACATGTCTGTGAGAGACACCACAACTATAAGGACCTGAGCAGTAACTACATGGAGGCCCTGTGGATGGTCTCGGTCACCTTCTTGTCCATTGGTTACGGGGATGTTGTTCCCCACACCTACTGTGGCCGCAGCATCTGTCTACTCACTGGCATCATGATAAAAATTGCTGCAGCAaatgtactgagagagacttggaTGATCTACAAACACACCAAGCTTGCCAGGAAGAGAGACCACTGCAGAGTACGCATGCACCAGAGGAAGCTGCTACTCGCCATCCACCAGCTGCGTGATGtgaagatggagaggaggaagttGGCTGACCAGGCCAACACGCTTGTGGATCTCTGCAAGATGCAGAATCTGATGTATGACATGCTGTCCGAGGTGAGTGGATTACGAGGGGACCTGGAAACACACATAAACAGTCTGCAGCAGAATGTGGAGGAGCTGAGACAAGGCTTCAGGACCCTGATACCCCTCCTCTCCAGCACCCTCTCCACACAGAACTCTTCCATCCGCCACCTGCTAAGGGAGAGGGAAGAGCAGGCAGACACGGAGAATGGGAGGGCAGGATAGGAAATCCAGGaaagcagaacatcagacagcaaggaagagaggggagcagacaggacagagcGCGAACACAGGAGAAGATCTAGGGGAGGCCCACACAAGACAAACATGGCATATTCCTCTCAAGCCAGAAGTAGTCCTTGCTAAACATTACCTCTCAAAGAAAGTAAAGATGCCACTTCTGACATGTGCTGTGTATATAAATTGTTAAGCCCTGATATGTTCCTATCACTGAAAGCAATCATACAAGCCGCGCTGACCATTCCAGTTAGCAGCTGTGagaggtctttcagtgtattaaGACGCCTACAAACCTGGTTTAGGAGCCCAATGACCGAAGATAGAATGCATCATGACAATGCATACTAACACGCTGGGAAAGAGTGAAGTCATAGACAGGTTTGCACCTACAGTTTAATTTTGTTTCATTTCTAATCTTGATGGATAGACTAACATCCTGGTACTGTGTTATATAACTCACAAACGTTGTGAATATTTAGTCGGAGAAAGGGTTGCATGCTCGTATGTACATGTGTGTAAAATTGTGAAGTGTTGTTCCTACAggggtgttggagggtgtgtaTTTGTTTTTGTATAATTAATTAGGTAGAAATATTGTCCTGTAGCTAATTGACCTTGGAATATGTGATTTATTACCACAAATGCTATAAAATCATTATTTTCAA

Function

NR:

description
small conductance calcium-activated potassium channel protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571623.2 False 2741 mRNA 0.50 10 31658478 31696797
XM_021571624.2 True 2630 mRNA 0.50 9 31658478 31696797
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496010 LOC106588177 coding upstream 359 31586928 ~ 31658119 (+)
LOC110496008 LOC106588176 coding upstream 78159 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 coding upstream 87029 31568375 ~ 31572239 (+)
LOC110496003 LOC106588172 coding upstream 214904 31430305 ~ 31443574 (+)
LOC110496002 LOC106588171 coding upstream 299666 31254186 ~ 31358812 (+)
LOC110496017 LOC106588186 coding downstream 110972 31807769 ~ 31812186 (+)
LOC110496018 LOC106588187 coding downstream 117108 31813905 ~ 31858017 (+)
LOC110496019 LOC106588188 coding downstream 185149 31881946 ~ 31919423 (+)
LOC110496020 LOC106588189 coding downstream 227476 31924273 ~ 31952541 (+)
LOC110496022 LOC106588190 coding downstream 288958 31985755 ~ 32007951 (+)
G1538148 NA non-coding upstream 4662 31653413 ~ 31653816 (+)
G1538146 NA non-coding upstream 6636 31651641 ~ 31651842 (+)
G1538141 NA non-coding upstream 13689 31644567 ~ 31644789 (+)
G1538110 NA non-coding upstream 74468 31583748 ~ 31584010 (+)
G1538106 NA non-coding upstream 83693 31574549 ~ 31574785 (+)
G1538184 NA non-coding downstream 16893 31713690 ~ 31714093 (+)
G1538192 NA non-coding downstream 25736 31722533 ~ 31723919 (+)
G1538216 NA non-coding downstream 73439 31770236 ~ 31771343 (+)
G1538219 LOC106588184 non-coding downstream 82475 31779272 ~ 31784559 (+)
G1538267 NA non-coding downstream 174395 31871192 ~ 31873392 (+)
G1537251 NA other upstream 830432 30822508 ~ 30828046 (+)
G1536720 NA other upstream 1361132 30297131 ~ 30297346 (+)
G1534495 NA other upstream 2845375 28812829 ~ 28813103 (+)
G1538208 LOC106588182 other downstream 56913 31753710 ~ 31754191 (+)
G1539641 NA other downstream 1323431 33020228 ~ 33020544 (+)
G1539671 LOC106582599 other downstream 1362193 33058990 ~ 33059857 (+)
LOC110496797 LOC106570068 other downstream 1758763 33455560 ~ 33458964 (+)
G1540551 NA other downstream 1792540 33489337 ~ 33491121 (+)

Expression

LOC110496011(LOC106588179) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC110496011(LOC106588179) Expression in each Bioproject

Bar chart with 21 bars.
LOC110496011(LOC106588179) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network