LOC100136047 (LOC106605923)


Basic Information

Item Value
gene id LOC100136047
gene name LOC106605923
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31684840 ~ 31692733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571625.2
TTCACTCACTTCCTGCCCGTGCACCAAAGTAGCGTCAATAGAAACCCCTTGTTTCCGATCATGCCTTCTTTCAGGCAACGGCTATTTCTTCGCAAACATGCCACTCGCAAAAGACTTGTTGCACCCATCccctgaggaggagaagaggagccaCAAGAAGAAGCGTCTTGTCCAGAGCCCAAACTCCTACTTCATGGATGTTAAGTGCCCAGGATGCTACAAGATCACAACGGTGTTCAGCCACGCCCAGACGGTTGTGCTGTGTGTGGGTTGCTCCACAGTTCTGTGTCAGCCCACTGGAGGCAAAGCACGTCTCACAGAGGGGTGCTCATTCAGGAGGAAGCAGCATTAGTTGTACTTCTGATGCCCCGGTAAAAATGTAAGAGGAGGGGTTGGACATGTTGATTTCAGCGACTCCAGCCTCGATACAGCACCCAAGAAAGATTGATCCAGAAGTGCTCATGACGCCTGGACACCAGAAGGGATTACTCATTCAATGTGATAGTCCACTTTGTTTTTAGTAACTGAACTCTTCAACCCAATCTTTTTTAATACAATTGTTTTGGCTAAAGAATGGGTGGTTTGTACTTTTTTGTTTCCTTTTCAATATTTGCCTAAATTGGGATTGAAATGTTTTTATCTACATCAGTTGGGTAATTCACATGAAACCAGTTTATTTTTATACATGTCTGTAGCAAATTGTGTTACAAAACCATGTGTTTGCAAAAATCAACTATGATTATGAGGACTACGGTCAACATTTTTGGCCAAGTGTCTTATTTTAAATTGTACGTTCTCACCTGAATTTTGTACATTTTCAGTTTTCATTACCTTTTTTGGATTAACTTCGAGTCATTTAATACCATTTTACTTTAGAAAAACATAATTTCTTTGAATAAAACTGCTGTAGTTTGTCCATAAATAACAAAACGATAAACTAGTATAAGTATACATTaaacaatgtctgtcaacatgcATCTCACTTTGGAGTTTTTACAGGAAGTTTAAAATCAGTTAAGTGTTTAAACACATATGATGCATGATCAAGAGGAGTAGTCCTTAGATGAGCACAAGTACATGTATTTGCTTGTACGCCTTCAGAATGAGGTTCTTATTTTCAAACAACCCCTTTAACCAACTTGGCCTTCTCAATACTGAAACGGCAAGAAAAGCTCCAATTAGGAAAGAGTGATGTGAATTTTATTGTGTAATTTAAATTTCGATATTTGTATTTTCAGTTTAATTCTGGTCTTTTCACAGGGGGAACAATGTTCTATCGGAAATGGATTTGTTTACTTTTATTGGACAAACTGTTGCGGTAATTAGAAAGTTGTGGAAATTGTCAACTGCATAATCTGATAAAGGAAATGGGCAAGTACAGATCCTAATCTCAGTGATCTATGACAATTTTGTGAAATTACACTTGAT
>TU1760867
GCCTTCTTTCAGGCAACGGCTATTTCTTCGCAAACATGCCACTCGCAAAAGACTTGTTGCACCCATCccctgaggaggagaagaggagccaCAAGAAGAAGCGTCTTGTCCAGAGCCCAAACTCCTACTTCATGGATGTTAAGTGCCCAGGATGCTACAAGATCACAACGGTGTTCAGCCACGCCCAGACGGTTGTGCTGTGTGTGGGTTGCTCCACAGTTCTGTGTCAGCCCACTGGAGGCAAAGCACGTCTCACAGAGGGGTGCTCATTCAGGAGGAAGCAGCATTAGTTGTACTTCTGATGCCCCGGTAAAAATGTAAGAGGAGGGGTTGGACATGTTGATTTCAGCGACTCCAGCCTCGATACAGCACCCAAGAAAGATTGATCCAGAAGTGCTCATGACGCCTGGACACCAGAAGGGATTACTCATTCAATGTGATAGTCCACTTTGTTTTTAGTAACTGAACTCTTCAACCCAATCTTTTTTAATACAATTGTTTTGGCTAAAGAATGGGTGGTTTGTACTTTTTTGTTTCCTTTTCAATATTTGCCTAAATTGGGATTGAAATGTTTTTATCTACATCAGTTGGGTAATTCACATGAAACCAGTTTATTTTTATACATGTCTGTAGCAAATTGTGTTACAAAACCATGTGTTTGCAAAAATCAACTATGATTATGAGGACTACGGTCAACATTTTTGGCCAAGTGTCTTATTTTAAATTGTACGTTCTCACCTGAATTTTGTACATTTTCAGTTTTCATTACCTTTTTTGGATTAACTTCGAGTCATTTAATACCATTTTACTTTAGAAAAACATAATTTCTTTGAATAAAACTGCTGTAGTTTGTCCATAAATAACAAAACGATAAACTAGTATAAGTATACATTaaacaatgtctgtcaacatgcATCTCACTTTGGAGTTTTTACAGGAAGTTTAAAATCAGTTAAGTGTTTAAACACATATGATGCATGATCAAGAGGAGTAGTCCTTAGATGAGCACAAGTACATGTATTTGCTTGTACGCCTTCAGAATGAGGTTCTTATTTTCAAACAACCCCTTTAACCAACTTGGCCTTCTCAATACTGAAACGGCAAGAAAAGCTCCAATTAGGAAAGAGTGATGTGAATTTTATTGTGTAATTTAAATTTCGATATTTGTATTTTCAGTTTAATTCTGGTCTTTTCACAGGGGGAACAATGTTCTATCGGAAATGGATTTGTTTACTTTTATTGGACAAACTGTTGCGGTAATTAGAAAGTTGTGGAAATTGTCAACTGCATAATCTGATAAAGGAAATGGGCAAGTACAGATCCTAAT
>TU1760868
GCCTTCTTTCAGGCAACGGCTATTTCTTCGCAAACATGCCACTCGCAAAAGACTTGTTGCACCCATCccctgaggaggagaagaggagccaCAAGAAGAAGCGTCTTGTCCAGAGCCCAAACTCCTACTTCATGGATGTTAAGTGCCCAGGATGCTACAAGATCACAACGGTGTTCAGCCACGCCCAGACGGTTGTGCTGTGTGTGGGTTGCTCCACAGTTCTGTGTCAGCCCACTGGAGGCAAAGCACGTCTCACAGAGGGGTGCTCATTCAGGAGGAAGCAGCATTAGTTGTACTTCTGATGCCCCGGTAAAAATGTAAGAGGAGGGGTTGGACATGTTGATTTCAGCGACTCCAGCCTCGATACAGCACCCAAGAAAGATTGATCCAGAAGTGCTCATGACGCCTGGACACCAGAAGGGATTACTCATTCAATGTGATAGTCCACTTTGTT

Function

NR:

description
40S ribosomal protein S27-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571625.2 False 1428 mRNA 0.38 4 31684840 31692733
TU1760867 False 1327 lncRNA 0.38 4 31684879 31692671
TU1760868 True 454 TUCP 0.51 4 31685752 31692671

Neighbor

gene id symbol gene type direction distance location
LOC110496009 LOC106588178 coding downstream 30604 31628863 ~ 31654236 (-)
LOC110496005 s10a4 coding downstream 149464 31530404 ~ 31535376 (-)
LOC110496004 LOC106588173 coding downstream 159957 31492852 ~ 31524883 (-)
LOC110496926 NA coding downstream 225753 31458837 ~ 31459087 (-)
LOC110495998 LOC106588170 coding downstream 588557 31090655 ~ 31096283 (-)
ash1l LOC106588182 coding upstream 29781 31722514 ~ 31769106 (-)
LOC110496013 LOC106588183 coding upstream 78879 31771612 ~ 31777330 (-)
LOC110496014 LOC106588184 coding upstream 86531 31779264 ~ 31784592 (-)
LOC110496016 LOC106588185 coding upstream 104335 31797068 ~ 31802818 (-)
dnjc8 dnjc8 coding upstream 333824 32026557 ~ 32032535 (-)
G1538561 NA non-coding downstream 26252 31657999 ~ 31658588 (-)
G1538557 NA non-coding downstream 36263 31648271 ~ 31648577 (-)
G1538550 NA non-coding downstream 41638 31643002 ~ 31643202 (-)
G1538548 NA non-coding downstream 45039 31639557 ~ 31639801 (-)
G1538596 NA non-coding upstream 22766 31715499 ~ 31715738 (-)
G1538602 NA non-coding upstream 48749 31741482 ~ 31741850 (-)
G1538500 NA non-coding upstream 77493 31770226 ~ 31771332 (-)
G1538610 NA non-coding upstream 83910 31776643 ~ 31875585 (-)
LOC110495994 LOC106588168 other downstream 670664 31008756 ~ 31014201 (-)
LOC110495992 LOC106588166 other downstream 731532 30911827 ~ 30955199 (-)
G1537091 NA other downstream 1081448 30602716 ~ 30603392 (-)
G1537022 NA other downstream 1159467 30519892 ~ 30525373 (-)
G1538595 NA other upstream 21773 31714506 ~ 31715181 (-)
atp5if1a LOC106588193 other upstream 364578 32057280 ~ 32058819 (-)
G1539348 NA other upstream 868993 32561726 ~ 32562120 (-)
G1540148 NA other upstream 1206845 32899578 ~ 32936569 (-)
G1540473 LOC106581475 other upstream 1698606 33391339 ~ 33391752 (-)

Expression


Co-expression Network