LOC110496014 (LOC106588184)


Basic Information

Item Value
gene id LOC110496014
gene name LOC106588184
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31779264 ~ 31784592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571629.2
ACGTGCTTCTTCTGTAGTCGCAGTCACATGACATTACTTCCTGGATCACATTTGTTTGTGCAGCGgccaaaaacatgttttattgttaTTGCAGGCAATAACAAACGGAATCTTCCAGCAAAATATGACTGAAGGAGAAACGGCGTTAAATAAAATACGAGGATATAGCTAGACAAGTCAATTAAATCAATATATGTACATTTTCGCCAATATCTTGACAGATTGCGGCAACGTCTTCCGTCGATAACAGATACATATCCTGGCTACCGTTATCTATGTCGTTATTAGCTTGCTAGCTGGTTGCATGTGTGTTATATTTGGCGATAAATCTATAACTTAAATATATAAACAACTGGCTAGCTAGACAATGACAACCCCGATACAGACATAATATATAACAGTTTGGTTTTTTTTGTTGCTAGGAAGCTACTGTAGCTTGCTACTAGTAGCGAACCAAATCCGCAGAatatagctaatgttagctagacaGCCTCCGAAATAACGGGAAACAGGTTGTTGGCAAACTGTTGTGTCAGTAGAAAGGTTTTATATTTGAACTAAGCAGGACATAcagaattgctgtaaagaaaaaTGTCAAAATACACAAGTTTTCCGGAACCGGGCGACGACCACAACCCTTTCCAGGACCCTGCAGTGACTCAACACAGCAGCAACACTGAGTATGCCACACTGGATCTTTACAACCCATTTGACAATAAAAATGGGCCCCCACCACCAGCCTATGCAGCAACTGCACCATCCGCCCCCCAACCTGTTGTTCCTGCAACAACCCCACCCAACAGGACTACACCCACAGAACCCCGCAACTATGGCACCTCCTTCACCCCCCAGcaGACCGCGGTCAACGCCACCACAGCAGAGCTCCTGAGAAAGCAGGAAGAGCTTGAGAAGAAAGCCCGcgagctggagaggagggagagggagctggaCTCACACGCCCTCGGCCCTGGAGCCaCTCGTCAGAATAACTGGCCTCCCTTGCCCACTTTCTGCCCTGTGGGACCCTGCTTCTACCAAGACATCAACATGGAGATCAGCCAGAGCTTCCAACACACTGTCTCCATCATGTATTACTACTGGATGTtCACAGCCTGCACACTGGCGTTTAACTTAATTTCCTGCCTGAGTCTGTTCTGTGTGGAGCCTTCTGGTGGTGTTGGGCTGGGCCTGGCCATCCTCTGGGTCCTCCTTTTCACCCCCTGCTCCTTTGTCTGCTGGTACAGGCCTGTGTACAAAGCCTTCAGGAGTGACAGCTCCTTCAACTTCTTCGCCTTCTTCTTCATTTTTTTCGTCCAAGTGATCTTCTACGTCATCATGACCATTGGCATTCCTGGTTGGGGTTTCAGTGGCTGGATTGTGAGTCTGGCTGCTCTGAAGACTAGCGTGCCTGTTGGTGTGATCATGATGCTCAATGCCATCCTATTCACTGCCCAGGCTGCCATGGGGGTCGTCTTGCTCAAGCGGgtCCACTCTCTGTACAGGCAGACCGGTGCTAGCTTCGTGAAGGCCCAGGCTGAGTTTGCCACTGGAGTGATGTCCAATCAGGCTGTACGCCAGGCAGCTGCCAACGCCACTGCTTCTGCAGCTCAGGGGGCCTTTACTGGTGCAGCtcggtagagagagggaaggcaaGCAAGTAGGGCAAGGGAGctagtagagagcgagagaggggtagGTACAGTATGTATGAGGGTGTATAGTACAAAAGAAGTAGGCAAGACTCAGGTGTTTTGATAAATTGTTTTGTCAAAGTAGGTGAAAGGGCTGGGACTTGAGTTTGTGATGGATGCACAGAAGTGATGCTCCATATTTAACAGCCGAACGGTTCAATTATCTGTGGCCAATGCTATTATGGTTGCTAACATGAGCTCCAAATAGTCAATTGTCTTGATATCCCAAATGAGAATGCCTACCTATTTACACACACTATCTTTGCCAAAATCACAACTGTAAATGAGAAAAACACGATGTTTTGGGTTGTAatattattgctattattatgTTATGTTGATGCTGTATTTGGTTGTCATGGTCGCCATTGTTCTTTCTTGGTTTTAATAAAAATCAGTTGATATGCTCAATATTTTCTACTTCCCTTTGGTCACTTCACCAATACAGTATCATTAGTCATGTCAGCAGCCTAACCTAAAATAGTGTATGTGTAGGCCTATTACGTCTAAGACTAATAAAGGCAGAGCGGGTTTTTCAGTGTTGTATATAATGTAGAGTTTCTGAAAACCTCTTCAATGGACTGATAAAGATGTACTTTAGTCTTCCCTACAAACTCCTGGGAAACTACATCAATGATGCATTTCTTGCTTTTAGTCATCACTTCTGTTATTTCTGTAACTTGTGTTTaatatactgagcaaaaatataaacgcaacatgtaaagtgttggtcccatgtttcttgagctgaaataaaatattccagatatgt
>XM_021571630.2
ACGTGCTTCTTCTGTAGTCGCAGTCACATGACATTACTTCCTGGATCACATTTGTTTGTGCAGCGgccaaaaacatgttttattgttaTTGCAGGCAATAACAAACGGAATCTTCCAGCAAAATATGACTGAAGGAGAAACGGCGTTAAATAAAATACGAGGATATAGCTAGACAAGTCAATTAAATCAATATATGTACATTTTCGCCAATATCTTGACAGATTGCGGCAACGTCTTCCGTCGATAACAGATACATATCCTGGCTACCGTTATCTATGTCGTTATTAGCTTGCTAGCTGGTTGCATGTGTGTTATATTTGGCGATAAATCTATAACTTAAATATATAAACAACTGGCTAGCTAGACAATGACAACCCCGATACAGACATAATATATAACAGTTTGGTTTTTTTTGTTGCTAGGAAGCTACTGTAGCTTGCTACTAGTAGCGAACCAAATCCGCAGAatatagctaatgttagctagacaGCCTCCGAAATAACGGGAAACAGGTTGTTGGCAAACTGTTGTGTCAGTAGAAAGGTTTTATATTTGAACTAAGCAGGACATAcagaattgctgtaaagaaaaaTGTCAAAATACACAAGTTTTCCGGAACCGGGCGACGACCACAACCCTTTCCAGCCCCCACCACCAGCCTATGCAGCAACTGCACCATCCGCCCCCCAACCTGTTGTTCCTGCAACAACCCCACCCAACAGGACTACACCCACAGAACCCCGCAACTATGGCACCTCCTTCACCCCCCAGcaGACCGCGGTCAACGCCACCACAGCAGAGCTCCTGAGAAAGCAGGAAGAGCTTGAGAAGAAAGCCCGcgagctggagaggagggagagggagctggaCTCACACGCCCTCGGCCCTGGAGCCaCTCGTCAGAATAACTGGCCTCCCTTGCCCACTTTCTGCCCTGTGGGACCCTGCTTCTACCAAGACATCAACATGGAGATCAGCCAGAGCTTCCAACACACTGTCTCCATCATGTATTACTACTGGATGTtCACAGCCTGCACACTGGCGTTTAACTTAATTTCCTGCCTGAGTCTGTTCTGTGTGGAGCCTTCTGGTGGTGTTGGGCTGGGCCTGGCCATCCTCTGGGTCCTCCTTTTCACCCCCTGCTCCTTTGTCTGCTGGTACAGGCCTGTGTACAAAGCCTTCAGGAGTGACAGCTCCTTCAACTTCTTCGCCTTCTTCTTCATTTTTTTCGTCCAAGTGATCTTCTACGTCATCATGACCATTGGCATTCCTGGTTGGGGTTTCAGTGGCTGGATTGTGAGTCTGGCTGCTCTGAAGACTAGCGTGCCTGTTGGTGTGATCATGATGCTCAATGCCATCCTATTCACTGCCCAGGCTGCCATGGGGGTCGTCTTGCTCAAGCGGgtCCACTCTCTGTACAGGCAGACCGGTGCTAGCTTCGTGAAGGCCCAGGCTGAGTTTGCCACTGGAGTGATGTCCAATCAGGCTGTACGCCAGGCAGCTGCCAACGCCACTGCTTCTGCAGCTCAGGGGGCCTTTACTGGTGCAGCtcggtagagagagggaaggcaaGCAAGTAGGGCAAGGGAGctagtagagagcgagagaggggtagGTACAGTATGTATGAGGGTGTATAGTACAAAAGAAGTAGGCAAGACTCAGGTGTTTTGATAAATTGTTTTGTCAAAGTAGGTGAAAGGGCTGGGACTTGAGTTTGTGATGGATGCACAGAAGTGATGCTCCATATTTAACAGCCGAACGGTTCAATTATCTGTGGCCAATGCTATTATGGTTGCTAACATGAGCTCCAAATAGTCAATTGTCTTGATATCCCAAATGAGAATGCCTACCTATTTACACACACTATCTTTGCCAAAATCACAACTGTAAATGAGAAAAACACGATGTTTTGGGTTGTAatattattgctattattatgTTATGTTGATGCTGTATTTGGTTGTCATGGTCGCCATTGTTCTTTCTTGGTTTTAATAAAAATCAGTTGATATGCTCAATATTTTCTACTTCCCTTTGGTCACTTCACCAATACAGTATCATTAGTCATGTCAGCAGCCTAACCTAAAATAGTGTATGTGTAGGCCTATTACGTCTAAGACTAATAAAGGCAGAGCGGGTTTTTCAGTGTTGTATATAATGTAGAGTTTCTGAAAACCTCTTCAATGGACTGATAAAGATGTACTTTAGTCTTCCCTACAAACTCCTGGGAAACTACATCAATGATGCATTTCTTGCTTTTAGTCATCACTTCTGTTATTTCTGTAACTTGTGTTTaatatactgagcaaaaatataaacgcaacatgtaaagtgttggtcccatgtttcttgagctgaaataaaatattccagatatgt
>XM_036952506.1
CACGTGCTTCTTCTGTAGTCGCAGTCACATGACATTACTTCCTGGATCACATTTGTTTGTGCAGCGgccaaaaacatgttttattgttaTTGCAGGCAATAACAAACGGAATCTTCCAGCAAAATATGACTGAAGGAGAAACGGCGTTAAATAAAATACGAGGATATAGCTAGACAAGTCAATTAAATCAATATATGTACATTTTCGCCAATATCTTGACAGATTGCGGCAACGTCTTCCGTCGATAACAGATACATATCCTGGCTACCGTTATCTATGTCGTTATTAGCTTGCTAGCTGGTTGCATGTGTGTTATATTTGGCGATAAATCTATAACTTAAATATATAAACAACTGGCTAGCTAGACAATGACAACCCCGATACAGACATAATATATAACAGTTTGGTTTTTTTTGTTGCTAGGAAGCTACTGTAGCTTGCTACTAGTAGCGAACCAAATCCGCAGAatatagctaatgttagctagacaGCCTCCGAAATAACGGGAAACAGGTTGTTGGCAAACTGTTGTGTCAGTAGAAAGGTTTTATATTTGAACTAAGCAGGACATAcagaattgctgtaaagaaaaaTGTCAAAATACACAAGTTTTCCGGAACCGGGCGACGACCACAACCCTTTCCAGGACCCTGCAGTGACTCAACACAGCAGCAACACTGAGTATGCCACACTGGATCTTTACAACCCATTTGACAATAAAAATGGGCCCCCACCACCAGCCTATGCAGCAACTGCACCATCCGCCCCCCAACCTGTTGTTCCTGCAACAACCCCACCCAACAGGACTACACCCACAGAACCCCGCAACTATGGCACCTCCTTCACCCCCCAGACCGCGGTCAACGCCACCACAGCAGAGCTCCTGAGAAAGCAGGAAGAGCTTGAGAAGAAAGCCCGcgagctggagaggagggagagggagctggaCTCACACGCCCTCGGCCCTGGAGCCaCTCGTCAGAATAACTGGCCTCCCTTGCCCACTTTCTGCCCTGTGGGACCCTGCTTCTACCAAGACATCAACATGGAGATCAGCCAGAGCTTCCAACACACTGTCTCCATCATGTATTACTACTGGATGTtCACAGCCTGCACACTGGCGTTTAACTTAATTTCCTGCCTGAGTCTGTTCTGTGTGGAGCCTTCTGGTGGTGTTGGGCTGGGCCTGGCCATCCTCTGGGTCCTCCTTTTCACCCCCTGCTCCTTTGTCTGCTGGTACAGGCCTGTGTACAAAGCCTTCAGGAGTGACAGCTCCTTCAACTTCTTCGCCTTCTTCTTCATTTTTTTCGTCCAAGTGATCTTCTACGTCATCATGACCATTGGCATTCCTGGTTGGGGTTTCAGTGGCTGGATTGTGAGTCTGGCTGCTCTGAAGACTAGCGTGCCTGTTGGTGTGATCATGATGCTCAATGCCATCCTATTCACTGCCCAGGCTGCCATGGGGGTCGTCTTGCTCAAGCGGgtCCACTCTCTGTACAGGCAGACCGGTGCTAGCTTCGTGAAGGCCCAGGCTGAGTTTGCCACTGGAGTGATGTCCAATCAGGCTGTACGCCAGGCAGCTGCCAACGCCACTGCTTCTGCAGCTCAGGGGGCCTTTACTGGTGCAGCtcggtagagagagggaaggcaaGCAAGTAGGGCAAGGGAGctagtagagagcgagagaggggtagGTACAGTATGTATGAGGGTGTATAGTACAAAAGAAGTAGGCAAGACTCAGGTGTTTTGATAAATTGTTTTGTCAAAGTAGGTGAAAGGGCTGGGACTTGAGTTTGTGATGGATGCACAGAAGTGATGCTCCATATTTAACAGCCGAACGGTTCAATTATCTGTGGCCAATGCTATTATGGTTGCTAACATGAGCTCCAAATAGTCAATTGTCTTGATATCCCAAATGAGAATGCCTACCTATTTACACACACTATCTTTGCCAAAATCACAACTGTAAATGAGAAAAACACGATGTTTTGGGTTGTAatattattgctattattatgTTATGTTGATGCTGTATTTGGTTGTCATGGTCGCCATTGTTCTTTCTTGGTTTTAATAAAAATCAGTTGATATGCTCAATATTTTCTACTTCCCTTTGGTCACTTCACCAATACAGTATCATTAGTCATGTCAGCAGCCTAACCTAAAATAGTGTATGTGTAGGCCTATTACGTCTAAGACTAATAAAGGCAGAGCGGGTTTTTCAGTGTTGTATATAATGTAGAGTTTCTGAAAACCTCTTCAATGGACTGATAAAGATGTACTTTAGTCTTCCCTACAAACTCCTGGGAAACTACATCAATGATGCATTTCTTGCTTTTAGTCATCACTTCTGTTATTTCTGTAACTTGTGTTTaatatactgagcaaaaatataaacgcaacatgtaaagtgttggtcccatgtttcttgagctgaaataaaatattccagatatgt

Function

NR:

description
secretory carrier-associated membrane protein 3-like isoform X1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571629.2 False 2463 mRNA 0.45 9 31779264 31784591
XM_021571630.2 False 2382 mRNA 0.45 8 31779264 31784591
XM_036952506.1 True 2461 mRNA 0.45 9 31779264 31784592

Neighbor

gene id symbol gene type direction distance location
LOC110496013 LOC106588183 coding downstream 1934 31771612 ~ 31777330 (-)
ash1l LOC106588182 coding downstream 10158 31722514 ~ 31769106 (-)
LOC100136047 LOC106605923 coding downstream 86531 31684840 ~ 31692733 (-)
LOC110496009 LOC106588178 coding downstream 125028 31628863 ~ 31654236 (-)
LOC110496005 s10a4 coding downstream 243888 31530404 ~ 31535376 (-)
LOC110496016 LOC106588185 coding upstream 12476 31797068 ~ 31802818 (-)
dnjc8 dnjc8 coding upstream 241965 32026557 ~ 32032535 (-)
LOC110496024 LOC106588192 coding upstream 252563 32037155 ~ 32056879 (-)
atp5if1a LOC106588193 coding upstream 272688 32057280 ~ 32058819 (-)
LOC110496026 LOC106588194 coding upstream 302635 32087227 ~ 32114802 (-)
G1538500 NA non-coding downstream 7932 31770226 ~ 31771332 (-)
G1538602 NA non-coding downstream 37414 31741482 ~ 31741850 (-)
G1538596 NA non-coding downstream 63526 31715499 ~ 31715738 (-)
G1538691 NA non-coding upstream 121997 31906589 ~ 31917932 (-)
G1538735 NA non-coding upstream 179413 31964005 ~ 31964594 (-)
G1538744 NA non-coding upstream 194939 31979531 ~ 31979796 (-)
G1538745 NA non-coding upstream 195944 31980536 ~ 31981141 (-)
G1538746 NA non-coding upstream 197948 31982540 ~ 31982930 (-)
G1538595 NA other downstream 64083 31714506 ~ 31715181 (-)
LOC110496004 LOC106588173 other downstream 255808 31492852 ~ 31524883 (-)
LOC110495994 LOC106588168 other downstream 765088 31008756 ~ 31014201 (-)
LOC110495992 LOC106588166 other downstream 825956 30911827 ~ 30955199 (-)
G1539348 NA other upstream 777134 32561726 ~ 32562120 (-)
G1540148 NA other upstream 1114986 32899578 ~ 32936569 (-)
G1540473 LOC106581475 other upstream 1606747 33391339 ~ 33391752 (-)
LOC110496048 LOC106588215 other upstream 1817882 33602474 ~ 33610948 (-)

Expression


Co-expression Network