LOC110496017 (LOC106588186)


Basic Information

Item Value
gene id LOC110496017
gene name LOC106588186
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31807769 ~ 31812186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571632.2
CCATCTGCCAACCAACCACGGCCGAGCACACAGTTCAGCACGTGCAGCGCATGGTAGCGATTCACATGTTACCCCTCGCTGTACTGAGGACTTTGAAAGGTAAACGGAATCTAAAACGAGGGAAAGGAGGAAACAGTACTGAGACGTTGAGAACAGAGGACTCTACAATTATAGCGCGCCATCAACATCAGTGTTGGTCATTGGTTTTTGAATAAGATCTTCTTACAATTGCAATTGGAGAAGGAATACCGGTTATTCAACTAGTTATCCATTTGACTGTTTTATTGAATTGTCTTCGCATCGACTTCATCCTAAAAGGGATGCATTTGTTGAGCATGTCCACCAAATGGCCGACCTATGATTCCCGCTCTTCCACACCCAGCTTCCTCCTCAGCGAGAGCGACGTGACTGAGGACGAGGCAGACATTGATGTCTTCACCTCCGAAAGTGAGGGAGATAGCTCAGGGGGTGGCAAGACCTGCTCAGTACCTAGGTTACACTGGTCCATGGCTGGGAGTGGACAAGCAAAATGCTTTCCTCACACCACCACCTACCCATCCATGATGGGTTCCCCTGGCAGTGCTGAGTTAagcacaaagggaagcacagaggAGACCATGCAAGGAGACCTGGCCTTCGCTCAGAAATGTTCAGAGCTGCAAAGGTTTATCAGACCCCTGTTGGAGCTTCTGAATGGACTCAAGAAAGGGAGATTTGAGAGAGGTCTTAGCAGTTTCCAGTCGAGCGTTGCCATCGATAGACTCCAGAGGATCCTGGGTATTCTTCAGAAACCTGAAATGGGAGAGAAATTCCTCCGCACCCTTCTGCAGGTAGAGATGATGCTGAAGATGTGGTTCCCCCATGTGACCCCTGTCGCTGCCACCCAGAACCCCACACCCAGTCTTCCGCCACGATGGCACCAAAATCAgctgtgcatgccagtcaagAAGCGCAAGCTTAGCTGGTTGGACTCTGACTTCCCCAATGCCGCCCCACCCAGCTGCAAGCGCCTGCAGCGCGAGGACAACTACCAGGAAATTACCTCACAAGACTCTTGCCCATTGAGCACAGACACCTATTACCCGTCATGTCTGACTGTCAGCAAGAGAAGAAAGGGAAATAAGAGGCTTGAAATTTCACCTTGCTCAGCATGTGGTAGCCCAGCCACACAAGACAGCCGtgtctcctccaccctcctgGTCTTTCACTCACATCAGCTCTCCCTCCATGGACATCAGCCACAGAGGTACCACAGCAGGCCTGGAACAgtgaagacagagacagatattgCATCAGTGGAAACCCAAAGGAGGGGTCAGTCTATCCCCATATTACTGAGGTCTATGAAACAAGAGCCGGAGTAGAAGATATAAAATTGAACTCGGAAGTCATTGCACCGTTTGACCATCTTTTGTCAGTGTTGGagagttatttaaaaaaaattgaaatgtaCCTGggaatatttttttatgtttgatGTGATAAAGCAGTGGTttaatttttaaatttttttatacTGGTTTGAAACAAGATCATTTTGTATTTCAGAATTATCAACAAAAATACAATCACATGAAATACACTATGCAGAAATAAAAAAGAAAGGATCATAGCTCAAGATTTATGGAATACCTTTTAACCTAACATAAACTCAGTTAGTTATGATAAAGTTATCAATAGTAGTGAAGCATAAAACATTGACAATACAATGAAAAACATTACAAGAACCTATTAATCCTTTAGCGGATCCAGCACAGGGAACAGTGAAATGGGCAGCTGATACAACTGGCACTAAACCTCTGCCAACCAGTGGCAACAAAACCATTGCTTTTATTTCACACTCTGCCGAGTCTGTTAGCCACAGTTTAATGTAACTATTGACTAAATCCACCTCAGTGTGAATACTAACAACCCCAGTAGCATGCAACTGGAATGACAGCAACCACTAAGAACTACGAGAGGAGAAATAACAACCCTTAGATTTGAGGTAATACTCATCAAATAGGTCTGCTCGAAAATCCTGGGTGCAGACTAGAGCATATTAATTGGCTTAATGCTTTCTAACTTCATTGATTTATTTGATAGAATACATTTATCATCCTTTATTTTTTTGTCAGTTTTCTCTGGTGTGCCAAAACTATTTTGCACATGAGTATTTTACATTTGATAACAAAGGAAATTGTACCTTATAAATGTTACTATTGTGACGACGCAAAACACAAATCATTTTGAATCTTCTAGGAGTGTTTCTATTGTATTGGGAGAAAATACACAAAAACCTTTCATTAGGTCATTGGGTATTTGAACCACAATGTTTTTGCTTAGCAATTATCATTCATGTTGAATGACTCTATCCCTGGCCACTTTCAGAGAGTCTCTTGAGCTGTAACTACCTAGATGGGGTTAGGGGGAAACCAAGAATAGCTAGTAGTATCCACTGATTTGATCTACAGACTTCaagatttattttttaaacgACAACAGTTAAGCCTAATACAAGACAACCGAAACATCATGATCAGAATCAAATCAACattttgtgaatgtgtgtgggttttggaTGGGAGTGTCAatgttgtgtatgtgtgagtcaGTGTTTGtatgtatagtctagtgagtgtgcgcagggtcagtgcagatagtttaATTAATTgattatttagcagtcttatggcttgggggtgatTTACCATACTGGTAGTATATGTTATTGTTCTTTACCATGCCAAGGAAAGGCCCAGGTAGAGGACAACCGAGAGATCACTGCAGCAGTAAATACAGGTAACTGTGTTGAGGCAATGCACAACCCTTCCTAAAAACTGTTCAAACAGCCCATTGGGGTGttgtttatttttatatttcCTGTGAGGAAATATTGTAATTTCATGTCATGTTTTTGGTGTATGTAGGGCCTATGTTTTGCACATTTTCTCTGTTTATCAAAAGAGGACAAATGTTTGGGCTGAGAATGATATTTTGCTGTTTAATGTTGTCTTCCTTGATTCAATCCATTTCCTTTGCCTCCTCTCTTCCCAACTTTTACTCAACACCCTCCATCACATTTTTGGGTTgggcataatataatagtgttTTGGTTATACACCATGTACTTGTGCTTAATATTTTATATATAATTGTTTCAGACCTAAATTGTTTTTGATAAATTGTACCCTTTTTTGCTAAAATAAAGTAATGTTTTTGTTAATCAGAACTTGAAA

Function

NR:

description
uncharacterized protein LOC110496017

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571632.2 True 3218 mRNA 0.42 5 31807769 31812186
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496011 LOC106588179 coding upstream 110972 31658478 ~ 31696797 (+)
LOC110496010 LOC106588177 coding upstream 149650 31586928 ~ 31658119 (+)
LOC110496008 LOC106588176 coding upstream 227450 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 coding upstream 236320 31568375 ~ 31572239 (+)
LOC110496003 LOC106588172 coding upstream 364195 31430305 ~ 31443574 (+)
LOC110496018 LOC106588187 coding downstream 1719 31813905 ~ 31858017 (+)
LOC110496019 LOC106588188 coding downstream 69760 31881946 ~ 31919423 (+)
LOC110496020 LOC106588189 coding downstream 112087 31924273 ~ 31952541 (+)
LOC110496022 LOC106588190 coding downstream 173569 31985755 ~ 32007951 (+)
LOC110496023 LOC106588191 coding downstream 196043 32008229 ~ 32020839 (+)
G1538219 LOC106588184 non-coding upstream 23210 31779272 ~ 31784559 (+)
G1538216 NA non-coding upstream 36426 31770236 ~ 31771343 (+)
G1538192 NA non-coding upstream 83850 31722533 ~ 31723919 (+)
G1538184 NA non-coding upstream 93676 31713690 ~ 31714093 (+)
G1538148 NA non-coding upstream 153953 31653413 ~ 31653816 (+)
G1538267 NA non-coding downstream 59006 31871192 ~ 31873392 (+)
G1538315 NA non-coding downstream 147656 31959842 ~ 31960078 (+)
G1538316 NA non-coding downstream 147919 31960105 ~ 31960329 (+)
G1538318 NA non-coding downstream 148977 31961163 ~ 31962400 (+)
G1538317 NA non-coding downstream 151646 31963832 ~ 31966021 (+)
G1538208 LOC106588182 other upstream 53578 31753710 ~ 31754191 (+)
G1537251 NA other upstream 979723 30822508 ~ 30828046 (+)
G1536720 NA other upstream 1510423 30297131 ~ 30297346 (+)
G1539641 NA other downstream 1208042 33020228 ~ 33020544 (+)
G1539671 LOC106582599 other downstream 1246804 33058990 ~ 33059857 (+)
LOC110496797 LOC106570068 other downstream 1643374 33455560 ~ 33458964 (+)
G1540551 NA other downstream 1677151 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 1723090 33535229 ~ 33537569 (+)

Expression

LOC110496017(LOC106588186) Expression in all Baseline Samples

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LOC110496017(LOC106588186) Expression in each Bioproject

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LOC110496017(LOC106588186) Expression in each Sample
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Co-expression Network