LOC110496022 (LOC106588190)


Basic Information

Item Value
gene id LOC110496022
gene name LOC106588190
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31985755 ~ 32007951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037430.1
ATCGCATTCTACACTCTGTCTGCAGTGCACATGTATATCCATCGTAGGAGACCACACCGGGGATAACGTTCCCACCCACTGCCCAGTTTGCAAGTGTCTTCCAATTCATCATGGCGGTGGGTGTAGTAATAGTTAGTTAGCCTGCACACCCGGGTGCTTTTACTTCGACCAAAGAGTATGCATGGGAAATTGGACAAAGCTAACGTTATATACTACCTGCGTTTAAAACACAAAGGTCTAAGAACTGCAGCATGTTGAAAAAAATTGGCTAAAACGGAACACTGTGACATACCCTCCCCCTTGCCTTGGTTGCTAAAACTAACGTTCATTTAGCTAGCTGACTGGCTAAAGCTAACAATCGCTTAGCTAGCTGACTGGCTAAAGCTAACGTTCActtggctagctgactggctaaAGCTAACGTTCATTTAGCTAGCTGACTGGGCTAACGTCGTCCGCGGAAGTGGACAGTGAATGTTTTTGCGGGAAGCTTCAGGACCAGAACACAGACCTACTGTTGAAAACCTGAGAGCACCCATTAGATAGGTGTCACAGTCTCCCAAGTGATGGAGAGTGGGGATGATGAGATGGAGATGACCGTGGGGGAGCTTCAGGGCTGGatacaggaggaggtggagaatcAAGACTTGGTGAAACTCAGGAGGACCCAGCTGGCCCAGATGCAGAACCTAGTGCAGCGGAAGGAGAAGCAGGCCCTCTGCACCCGCACCCTTTTCAACACTGCCTGCGAGTCTGTGGTGGAGTGTGAGACCGTTATGAAGGCGCTGTACAGCAAACTGGGCATGGAGTACAGAGACACAGACTCTGAAGATGAAGGAGTGGGCCAGCAAAGTATCATTGAGATCGATGATGGGGACGCTGACAGAAACGACAACACCATGGCCACAGACGGAGTTGCTGCTTCCGATTCGGCTCCTGGAGAAGTCCCAGCTACAGACAGTGACACAGAAAATTACAATGACATGGCAGATGACATGGAGAGCATGCCATCCTCTCCAGCTGTGACCACCCCTTTTGTGACTGTAACTGTTGCCCCAAATGAAGCCTCAAACTCTAATGATACCCCAGCAACTCCCCTTGCGGAGTCTGAGTCTGAACCACCAAGTCCACAAGAAGACAGTGGCGATGAGTATACTCCATCAAAATCAAAAAAGATCTCAACAAAACGTCCAGAATCCAGCAAACGTGGACGGCCAAGAAAAGGTGGAAAAGGTGAAAGGAAGAGAAGAGAATCTGTCCGAACCAAGCATCAACTTGTGTCTTACAGGGAAGACTCACCTCCTGCCCCAACAAATCCTTCTGTGCCATCGAAACCACAAAAGCCCAGAGCAGGTGACTGCTCTGCGTCGACAAAACAGCAGAACTCAAGCAAAAGTGGCACAGCTTCCCCACCAAAATTACAGGAGGCCAGCAAAAGTGGTTCCACTGTCCCATTAAAACAACAAGAGGCCAGAAAAGAAACGTCCACTCCATTTGTGGTGACCAGCGTGTCGCAAGCTCCGACACATGCACCAAACCCTGCCACTCAGCCACCTCCCGGCCTCACAGAGGAGGAGATTAAGACTGATATGAAGGTCCTGGCTAGGAGGAGGACCAAGACCTGGCACTCAGGAAGGATTACAGAAATCAAACCATCAGAGAATGGAAGCAGGTATAAGGTGGACTTTAGCGAGAAAGGGAGAAGCATGCTGTCAGGACACCACATAGCCTTTGACCAGACTGCTTCACTGGAGAGGCTGTACGTGGGTGTGCGCGTGGTGGCCAAGTTCAAGGACGCCGAGCAGTCCTGGTTCTACTCTGGCATTCTGGCTGAGCTCCCCAACCGAAAGAACCGCATGAGGTTCCTGGTCTTTTTTGATGACGGCACACCTTCCTATGTCGGTTTGCCGGATCTTCACATTGTTTGCAGACCACTGCCGGAGGTGTGGGAGGACATAGAGGATGAGGCCAACAGGGAGTTCATCAAGGATTACATCAAGGTGTATCCCAACCCGCCTATGGCCCAGTACAGACCAGGCCAGCCCATCAATGTGGAGTTTGAGGGGatccagaggaggacagaagtagAGCAGATTGACTGCAGCTTGTTGTGCGTCGTCTTCAAGGATGACGAACATAAGGAATGGGTGTACCGAGGCTCTTTGCGTCTGGAGCATATGGCCAACATGAAGAAACGTGTTGAGGAGGCAAAGGATAAACCAACAGTGACACGGCCCAACAGTGGGGGAGCAGTTTCGACTACTACTACAATCCACCAGACTAGCACGGCTGCTGCCAACAAACCTCACGTCAACCCCTCGTCAACAGTAATACCAGCGCAGGTCACTTCCAACAATGTCAGCCAGGGCCAGCCAGCTGCTGGTAAACAGTCAGCATCCGTAGGGAGGCCCTTTGGCCAGGATCGTACGACTGACAAGGAGTCGTCTGTCATCACAGCTAAAGGTTCGGTCACCTTCACTCCCCACCGTTGCTGCCCCGCCTGCCTGAACTGCATCCGGTCAAAGGTTGAGGCCAAGCACCGTGGACGCAACCCGCTGCTCATCCCCCTGCTCTGCGAGTTCCGCCGCATGAAGGGCCGCCACCGGGTCAATAACAAGacgtATTTCCACATATTTTACCGGTCGCCGTGTGGCCTCAGCCTGAGCAACATGACTGCTGTGCAGGACTACCTTCAACAGACACGCTGTGACTTCCTCTTCCTGGACATGTTCTGCCTAGACCCCTTTGTGTCTGTGACCACCACTCACCAGCCCCGGCCCTACAAGATCAACATCCCAGACCTGACGCTGGGCAGAGAGAACCAGCCGCTGTCCTGCATCAACGAGCTCAACAGCATCCGGCCACTCTCGGTGATCTACAACAAGCAGCGTGTCGCAGCCAGTGGGGTCTCCATCAACACCAGTTCAGACTTTCTGATGGGCTGCGACTGCACCGACGGCTGCAGGGACAGGTCGGCATGTTCCTGTCACCAGCTGACCATCCAGGCCACAGCCCTGTTGCCAGCGGGCCCTGAGGACGTCAACGCTGGCTACACACACAAGAGGCTGGAGAAACGCCTCTCCACAGGTATATATGAGTGCAATGCACTGTGCCGCTGTGACCCACGGGTGTGCTCTAACCGGGTGGTGCAGCATGGCCTTCAGCTGCGGCTACAGCTCTTCATGACCGTGGGGAAGAGCTGGGGAATCCGCTGCCTGGATGACATTGCCAAGGGCACCTTCATCTGCACCTACACTGGGATAATCATGAACAAGAAGAGTTTGAGCACAGAGGGCAACATGTATATGGTCAACCTGAACCACATAGAGGGAGCTGAGAGCAAGGAGGGTTACGAGAGTGAGGCCCGCTGCTCCGACAATGAGTCAGGTTCAGAAGAGCCCATAGAAGAAGACAACAGTGAACATGATGATGACTGTGATGAAGAGGGAAACCACGACAAAGAGCCGCTACGTATGAAGAACTTATATGATGAAGAACCCAGTGACTATGAGGACAGTTATGAGGACAAGGATTATGATGTCAGTGAAGATGATGGCGGCTCTGATGATGACTTCAGGCACAACGTCTCCTCTATGGAGAGGAGCTACGTCACCCGCAGGCATGCCAAAATACTACAGGAGGACCCAGCGAAGAAATCGGGCTCTGCCGCCAAATCTTCTGACCAGCAGGATGGTACAGCAGAGGGAAATGACAAGGAGGCCTCAAATGCCACTAGGCATTTCTTTGATGGGGAGGAGTCATGCTACGTCATCGACGCAAAGCTGGAGGGGAATGTGGGTCGTTACCTCAATGAAAGAGGCCCTGTCAAGGTCCCTCTAATCTAGGGAGGAAGGGAACGGCATGGAACTGCCAGCCCACCTACTGTTTGTGCGCGTcatagcTGCCAACCAAACCTGTTTGCGCAGAATGTTTTTGTGGACACACATGACCTTCGATTCCCCTGGGTGGCCTTCTTTGCCAGCAAGCGCATTAGAGCTGGTACAGAGCTGGCGTGGGATTATAAATGTGAGCTTGGTGTGAAAAGGTCGTCAAGAGTCCTGAATTGTCGCTGTGATCCAGAGTGCAGGGAAAAGTTATGAAAGCCCATACTATTACTTCCAGCTTCACCGCTGCAGTAAATGTACGAATATACTGTAATAGGTAGTCTTAACCTTTTTTCAATAAAAAAATGAACGTTTTTGTA
>XM_021571643.2
CATTCTACACTCTGTCTGCAGTGCACATGTATATCCATCGTAGGAGACCACACCGGGGATAACGTTCCCACCCACTGCCCAGTTTGCAAGTGTCTTCCAATTCATCATGGCGGTGGGTGTAGTAATAGTTAGTTAGCCTGCACACCCGGGTGCTTTTACTTCGACCAAAGAGTATGCATGGGAAATTGGACAAAGCTAACGTTATATACTACCTGCGTTTAAAACACAAAGGTCTAAGAACTGCAGCATGTTGAAAAAAATTGGCTAAAACGGAACACTGTGACATACCCTCCCCCTTGCCTTGGTTGCTAAAACTAACGTTCATTTAGCTAGCTGACTGGCTAAAGCTAACAATCGCTTAGCTAGCTGACTGGCTAAAGCTAACGTTCActtggctagctgactggctaaAGCTAACGTTCATTTAGCTAGCTGACTGGGCTAACGTCGTCCGCGGAAGTGGACAGTGAATGTTTTTGCGGGAAGCTTCAGGACCAGAACACAGACCTACTGTTGAAAACCTGAGAGCACCCATTAGATAGGTGTCACAGTCTCCCAAGTGATGGAGAGTGGGGATGATGAGATGGAGATGACCGTGGGGGAGCTTCAGGGCTGGatacaggaggaggtggagaatcAAGACTTGGTGAAACTCAGGAGGACCCAGCTGGCCCAGATGCAGAACCTAGTGCAGCGGAAGGAGAAGCAGGCCCTCTGCACCCGCACCCTTTTCAACACTGCCTGCGAGTCTGTGGTGGAGTGTGAGACCGTTATGAAGGCGCTGTACAGCAAACTGGGCATGGAGTACAGAGACACAGACTCTGAAGATGAAGGAGTGGGCCAGCAAAGTATCATTGAGATCGATGATGGGGACGCTGACAGAAACGACAACACCATGGCCACAGACGGAGTTGCTGCTTCCGATTCGGCTCCTGGAGAAGTCCCAGCTACAGACAGTGACACAGAAAATTACAATGACATGGCAGATGACATGGAGAGCATGCCATCCTCTCCAGCTGTGACCACCCCTTTTGTGACTGTAACTGTTGCCCCAAATGAAGCCTCAAACTCTAATGATACCCCAGCAACTCCCCTTGCGGAGTCTGAGTCTGAACCACCAAGTCCACAAGAAGACAGTGGCGATGAGTATACTCCATCAAAATCAAAAAAGATCTCAACAAAACGTCCAGAATCCAGCAAACGTGGACGGCCAAGAAAAGGTGGAAAAGGTGAAAGGAAGAGAAGAGAATCTGTCCGAACCAAGCATCAACTTGTGTCTTACAGGGAAGACTCACCTCCTGCCCCAACAAATCCTTCTGTGCCATCGAAACCACAAAAGCCCAGAGCAGGTGACTGCTCTGCGTCGACAAAACAGCAGAACTCAAGCAAAAGTGGCACAGCTTCCCCACCAAAATTACAGGAGGCCAGCAAAAGTGGTTCCACTGTCCCATTAAAACAACAAGAGGCCAGAAAAGAAACGTCCACTCCATTTGTGGTGACCAGCGTGTCGCAAGCTCCGACACATGCACCAAACCCTGCCACTCAGCCACCTCCCGGCCTCACAGAGGAGGAGATTAAGACTGATATGAAGGTCCTGGCTAGGAGGAGGACCAAGACCTGGCACTCAGGAAGGATTACAGAAATCAAACCATCAGAGAATGGAAGCAGGTATAAGGTGGACTTTAGCGAGAAAGGGAGAAGCATGCTGTCAGGACACCACATAGCCTTTGACCAGACTGCTTCACTGGAGAGGCTGTACGTGGGTGTGCGCGTGGTGGCCAAGTTCAAGGACGCCGAGCAGTCCTGGTTCTACTCTGGCATTCTGGCTGAGCTCCCCAACCGAAAGAACCGCATGAGGTTCCTGGTCTTTTTTGATGACGGCACACCTTCCTATGTCGGTTTGCCGGATCTTCACATTGTTTGCAGACCACTGCCGGAGGTGTGGGAGGACATAGAGGATGAGGCCAACAGGGAGTTCATCAAGGATTACATCAAGGTGTATCCCAACCCGCCTATGGCCCAGTACAGACCAGGCCAGCCCATCAATGTGGAGTTTGAGGGGatccagaggaggacagaagtagAGCAGATTGACTGCAGCTTGTTGTGCGTCGTCTTCAAGGATGACGAACATAAGGAATGGGTGTACCGAGGCTCTTTGCGTCTGGAGCATATGGCCAACATGAAGAAACGTGTTGAGGAGGCAAAGGATAAACCAACAGTGACACGGCCCAACAGTGGGGGAGCAGTTTCGACTACTACTACAATCCACCAGACTAGCACGGCTGCTGCCAACAAACCTCACGTCAACCCCTCGTCAACAGTAATACCAGCGCAGGTCACTTCCAACAATGTCAGCCAGGGCCAGCCAGCTGCTGGTAAACAGTCAGCATCCGTAGGGAGGCCCTTTGGCCAGGATCGTACGACTGACAAGGAGTCGTCTGTCATCACAGCTAAAGGTTCGGTCACCTTCACTCCCCACCGTTGCTGCCCCGCCTGCCTGAACTGCATCCGGTCAAAGGTTGAGGCCAAGCACCGTGGACGCAACCCGCTGCTCATCCCCCTGCTCTGCGAGTTCCGCCGCATGAAGGGCCGCCACCGGGTCAATAACAAGacgtATTTCCACATATTTTACCGGTCGCCGTGTGGCCTCAGCCTGAGCAACATGACTGCTGTGCAGGACTACCTTCAACAGACACGCTGTGACTTCCTCTTCCTGGACATGTTCTGCCTAGACCCCTTTGTGTCTGTGACCACCACTCACCAGCCCCGGCCCTACAAGATCAACATCCCAGACCTGACGCTGGGCAGAGAGAACCAGCCGCTGTCCTGCATCAACGAGCTCAACAGCATCCGGCCACTCTCGGTGATCTACAACAAGCAGCGTGTCGCAGCCAGTGGGGTCTCCATCAACACCAGTTCAGACTTTCTGATGGGCTGCGACTGCACCGACGGCTGCAGGGACAGGTCGGCATGTTCCTGTCACCAGCTGACCATCCAGGCCACAGCCCTGTTGCCAGCGGGCCCTGAGGACGTCAACGCTGGCTACACACACAAGAGGCTGGAGAAACGCCTCTCCACAGGTATATATGAGTGCAATGCACTGTGCCGCTGTGACCCACGGGTGTGCTCTAACCGGGTGGTGCAGCATGGCCTTCAGCTGCGGCTACAGCTCTTCATGACCGTGGGGAAGAGCTGGGGAATCCGCTGCCTGGATGACATTGCCAAGGGCACCTTCATCTGCACCTACACTGGGATAATCATGAACAAGAAGAGTTTGAGCACAGAGGGCAACATGTATATGGTCAACCTGAACCACATAGAGGGAGCTGAGAGCAAGGAGGGTTACGAGAGTGAGGCCCGCTGCTCCGACAATGAGTCAGGTTCAGAAGAGCCCATAGAAGAAGACAACAGTGAACATGATGATGACTGTGATGAAGAGGGAAACCACGACAAAGAGCCGCTACGTATGAAGAACTTATATGATGAAGAACCCAGTGACTATGAGGACAGTTATGAGGACAAGGATTATGATGTCAGTGAAGATGATGGCGGCTCTGATGATGACTTCAGGCACAACGTCTCCTCTATGGAGAGGAGCTACGTCACCCGCAGGCATGCCAAAATACTACAGGAGGACCCAGCGAAGAAATCGGGCTCTGCCGCCAAATCTTCTGACCAGCAGGATGGTACAGCAGAGGGAAATGACAAGGAGGCCTCAAATGCCACTAGGCATTTCTTTGATGGGGAGGAGTCATGCTACGTCATCGACGCAAAGCTGGAGGGGAATGTGGGTCGTTACCTCAATcatagcTGCCAACCAAACCTGTTTGCGCAGAATGTTTTTGTGGACACACATGACCTTCGATTCCCCTGGGTGGCCTTCTTTGCCAGCAAGCGCATTAGAGCTGGTACAGAGCTGGCGTGGGATTATAAATGTGAGCTTGGTGTGAAAAGGTCGTCAAGAGTCCTGAATTGTCGCTGTGATCCAGAGTGCAGGGAAAAGTTATGAAAGCCCATACTATTACTTCCAGCTTCACCGCTGCAGTAAATGTACGAATATACTGTAATAGGTAGTCTTAACCTTTTTTCAATAAAAAAATGAACGTTTTTGTATTTTAATCATGCACTGAGTTTTTTTTGTTCATATTACAATTCTTAAATTGTGCTTTAATAAATTCAAGTATTTAAATGTA

Function

NR:

description
histone-lysine N-methyltransferase SETDB1-B-like

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K11421 SETDB1; [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037430.1 False 4204 mRNA 0.52 21 31985755 32007871
XM_021571643.2 True 4196 mRNA 0.51 20 31985759 32007951
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496020 LOC106588189 coding upstream 33214 31924273 ~ 31952541 (+)
LOC110496019 LOC106588188 coding upstream 66332 31881946 ~ 31919423 (+)
LOC110496018 LOC106588187 coding upstream 127738 31813905 ~ 31858017 (+)
LOC110496017 LOC106588186 coding upstream 173569 31807769 ~ 31812186 (+)
LOC110496011 LOC106588179 coding upstream 288958 31658478 ~ 31696797 (+)
LOC110496023 LOC106588191 coding downstream 278 32008229 ~ 32020839 (+)
LOC118941132 NA coding downstream 50101 32058052 ~ 32064812 (+)
LOC110496027 LOC106588195 coding downstream 333758 32341709 ~ 32351799 (+)
LOC110496028 NA coding downstream 344104 32352055 ~ 32361876 (+)
LOC118941135 NA coding downstream 566005 32573956 ~ 32659643 (+)
G1538326 NA non-coding upstream 2721 31982609 ~ 31983034 (+)
G1538330 NA non-coding upstream 6292 31979230 ~ 31979463 (+)
G1538323 NA non-coding upstream 14999 31970502 ~ 31970756 (+)
G1538317 NA non-coding upstream 19734 31963832 ~ 31966021 (+)
G1538318 NA non-coding upstream 23355 31961163 ~ 31962400 (+)
G1538336 NA non-coding downstream 17833 32025784 ~ 32079330 (+)
G1538382 NA non-coding downstream 72298 32080249 ~ 32080726 (+)
G1538974 NA non-coding downstream 242236 32250187 ~ 32250417 (+)
G1539280 NA non-coding downstream 498058 32506009 ~ 32506227 (+)
G1539310 NA non-coding downstream 523139 32531090 ~ 32531297 (+)
G1538208 LOC106588182 other upstream 231564 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 405435 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 413516 31568375 ~ 31572239 (+)
G1537251 NA other upstream 1157709 30822508 ~ 30828046 (+)
G1536720 NA other upstream 1688409 30297131 ~ 30297346 (+)
G1539641 NA other downstream 1012277 33020228 ~ 33020544 (+)
G1539671 LOC106582599 other downstream 1051039 33058990 ~ 33059857 (+)
LOC110496797 LOC106570068 other downstream 1447609 33455560 ~ 33458964 (+)
G1540551 NA other downstream 1481386 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 1527325 33535229 ~ 33537569 (+)

Expression

LOC110496022(LOC106588190) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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LOC110496022(LOC106588190) Expression in each Bioproject

Bar chart with 21 bars.
LOC110496022(LOC106588190) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network