LOC110496023 (LOC106588191)


Basic Information

Item Value
gene id LOC110496023
gene name LOC106588191
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32008229 ~ 32020839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571645.2
TAAAGCGAAACAATGTAAACTCGCGATATCAGGATGGTTTGTACGAGGTTAGAGCCCTAGCTAGCTGAACCAATAGTGAGAAGTGAAAACTAGGAATTGAAGCGCAAACACGGATTTCCTGTGGGATAAACGCACAGGCCTGGCTGATATAACGATGCCACACTCGAGGCGGTACCCGTCCTCAGAAAGGGCCAGCCGGAGCAGCTATCAAGACCGGGACAGAGACCGAGGACGCAAGCAGAGGCACCGCAGATCGCCCTCTTTTTCCTCTAGCAGTGACCGGGAGAGGGATCGGGACAGAGACCGAAGGGGACGGGGAAACCGACAGGAGGGAAGCTACGCTCGCTCCAGGAGCTACGATAATCGCTCGGCAGACCGCAGGCCATACGACCGGCGCTACTGTGAGGGCTACCGCCGCCTGGACCAGAGCCACGAACGAGACCGCGGAAACAGGGAAAGGGAACATGGAGGTGCACCAGCAGCAGCCGACGGCGGTTACTACGCACGTGACTTCTCACCGAGCATGTGCGACTACCGGAGGGGGCGCGAGAGGGAACGGGAGGAGTCGTACCGAAGGAAGGGCAGCAGGCGTAAGCACAAACGAAGGCGGCGTAGAACCAGGTCCTATAGCCCATCCTCCTCGCGGAGTGACAGCCGGACGCGGGCACTGAGTGTGAGGGACGACGAGGAAGGGCACCTGATCTGTCGGAGTGGGGACGTCCTGCAAGAGAGATaTGAGATTGTCAGCACTCTGGGGGAAGGCACCTTTGGGAGGGTGATGCAATGTATTGACCATCGTCGGGGAGGGGCCGCTGTTGCTCTGAAGATCATAAAAAATGTGGAGAAATACAAGGAAGCAGCTCGTCTGGAGATCAATGTGCTGGAGAGAATCAATGAGAAAGATCCGGAAAACAAACACCTGTGTGTGCAGATGTATGACTGGTTCGACTACCACGGCCACATGTGTATCTCCTTCGAGCTGCTGGCCCTCAGCACCTTCGACTTCCTCAAGGAGAACAACTACCTGCCCTATTCCATCGCCCAGGTCCGACACATGGCCTACCAGCTCTGCCTGTCCGTCAAGTTTCTTCATGATACCAAGTTGACGCACACAGACCTGAAGCCAGAAAACATCCTGTTTGTCAATTCCGACTTCACTATGACCTATAATGTAGAGAAGAAGCGCGACGAGCGGACAGTGAAGAGCACGGACGTACGGGTGGTGGACTTTGGTAGCGCCACATTTGACCATGAGCACCACAGCACCATCGTCTCCACACGGCACTACCGCGCCCCGGAAGTCATACTAGAGCTGGGCTGGAGCCAGCCGTGTGATGTGTGGAGCATCGGTTGCATCCTGTTCGAGTACTACCTGGGCTTCACCTTGTTCCAGACTCATGATAACAGGGAGCAtctggccatgatggagagaatACTGGGGCCGGTGCCCTCCAGAATGATACGCAAGACAAGGAAGCAGAAATATTTTTACCGTGGCCGTCTGGACTGGGACGAGAGCTCGTCAGCTGGGAGATACGTGAGGGAGAACTGCAAACCCTTACGGAGGTACCTGTTGTCGGAAGCCGAGGAGCACCATCGGTTGTTTGACCTGATTGAGAGCATGCTGGAATACGAGCCCGCTAAGCGCCTGGCCCTGGCAGACTCCCTCAGACACCCTTTCTTCGAATCGGGGACAGCAGGCGATGCAGTGGGGGGGAAGAGCTGGGAGGGCAACCGCGACATCAGCCGGTGACCCGGGACCTCCACAGACTCTTAACGATAGAGCGATTTTTCAGGTGGAGCAGACCGATACGACCACTTCAGGCGGTACGGCCAAATTTGATGGACCTTATCAGTCTGTCTGAAATCCCTTGGCCATTCATCACAGCATGGACCCATTTCCTCCTGCTTACTGTACTGCCCCCACCCATCTCCACAGTTAGGAGAGAGGCTCATGCTGGCAGCTAGAAAACCAGAAGGACTTCAGAAAAAGACAGCCCTCCTTT
>XM_021571644.2
gtcaacaaaagctgatcgtggacttcaggagacagaagagggagtacgtccctatccacatcaacaggaccgCAATGGAGAAgttgaaaagcttcaagttcctcagcctCCACGTCACTGGCAATCTGAAatgcacccacacagacagtgtggtgaagaaggcacaacagcgcctcttcaacctcaggaggctgaagacattCAGAAgaaatactactgcactgttggagctagggacACAAgcattttacagatgcacaattgataGCATCCTatcaggctgtatcactgcctgctacagcaactgaaatgccTTCAACCACAGGGCTCGgaagagggtggtgcggtctgctcaACGCTtcactgggggcacactgcctgtcctccaggacacctacagcacccgatgtcacaggaaggccaaaaagatcaaggtcATCAACCACCCAGCCACGacctgttcacccctctatcatccacaagATGCCACACTCGAGGCGGTACCCGTCCTCAGAAAGGGCCAGCCGGAGCAGCTATCAAGACCGGGACAGAGACCGAGGACGCAAGCAGAGGCACCGCAGATCGCCCTCTTTTTCCTCTAGCAGTGACCGGGAGAGGGATCGGGACAGAGACCGAAGGGGACGGGGAAACCGACAGGAGGGAAGCTACGCTCGCTCCAGGAGCTACGATAATCGCTCGGCAGACCGCAGGCCATACGACCGGCGCTACTGTGAGGGCTACCGCCGCCTGGACCAGAGCCACGAACGAGACCGCGGAAACAGGGAAAGGGAACATGGAGGTGCACCAGCAGCAGCCGACGGCGGTTACTACGCACGTGACTTCTCACCGAGCATGTGCGACTACCGGAGGGGGCGCGAGAGGGAACGGGAGGAGTCGTACCGAAGGAAGGGCAGCAGGCGTAAGCACAAACGAAGGCGGCGTAGAACCAGGTCCTATAGCCCATCCTCCTCGCGGAGTGACAGCCGGACGCGGGCACTGAGTGTGAGGGACGACGAGGAAGGGCACCTGATCTGTCGGAGTGGGGACGTCCTGCAAGAGAGATaTGAGATTGTCAGCACTCTGGGGGAAGGCACCTTTGGGAGGGTGATGCAATGTATTGACCATCGTCGGGGAGGGGCCGCTGTTGCTCTGAAGATCATAAAAAATGTGGAGAAATACAAGGAAGCAGCTCGTCTGGAGATCAATGTGCTGGAGAGAATCAATGAGAAAGATCCGGAAAACAAACACCTGTGTGTGCAGATGTATGACTGGTTCGACTACCACGGCCACATGTGTATCTCCTTCGAGCTGCTGGCCCTCAGCACCTTCGACTTCCTCAAGGAGAACAACTACCTGCCCTATTCCATCGCCCAGGTCCGACACATGGCCTACCAGCTCTGCCTGTCCGTCAAGTTTCTTCATGATACCAAGTTGACGCACACAGACCTGAAGCCAGAAAACATCCTGTTTGTCAATTCCGACTTCACTATGACCTATAATGTAGAGAAGAAGCGCGACGAGCGGACAGTGAAGAGCACGGACGTACGGGTGGTGGACTTTGGTAGCGCCACATTTGACCATGAGCACCACAGCACCATCGTCTCCACACGGCACTACCGCGCCCCGGAAGTCATACTAGAGCTGGGCTGGAGCCAGCCGTGTGATGTGTGGAGCATCGGTTGCATCCTGTTCGAGTACTACCTGGGCTTCACCTTGTTCCAGACTCATGATAACAGGGAGCAtctggccatgatggagagaatACTGGGGCCGGTGCCCTCCAGAATGATACGCAAGACAAGGAAGCAGAAATATTTTTACCGTGGCCGTCTGGACTGGGACGAGAGCTCGTCAGCTGGGAGATACGTGAGGGAGAACTGCAAACCCTTACGGAGGTACCTGTTGTCGGAAGCCGAGGAGCACCATCGGTTGTTTGACCTGATTGAGAGCATGCTGGAATACGAGCCCGCTAAGCGCCTGGCCCTGGCAGACTCCCTCAGACACCCTTTCTTCGAATCGGGGACAGCAGGCGATGCAGTGGGGGGGAAGAGCTGGGAGGGCAACCGCGACATCAGCCGGTGACCCGGGACCTCCACAGACTCTTAACGATAGAGCGATTTTTCAGGTGGAGCAGACCGATACGACCACTTCAGGCGGTACGGCCAAATTTGATGGACCTTATCAGTCTGTCTGAAATCCCTTGGCCATTCATCACAGCATGGACCCATTTCCTCCTGCTTACTGTACTGCCCCCACCCATCTCCACAGTTAGGAGAGAGGCTCATGCTGGCAGCTAGAAAACCAGAAGGACTTCAGAAAAAGACAGCCCTCCTTTTAGTCCTCTCGGCTTCTGCTCCAACAGAAGGCATATGACCAAGAGGGGAGTTTTTAGCCCAACCTTAGATTACCCAGCTCCAGTCTTCCGCATGTAAAGGAAAGGACCGGCCTCGTGTAGTGGAACACTAGTGAGAGCAAGAGAAGCCTTGCTCTGAAAGCCAATATCGTGACCTCTTCATTTGAGGTGAAACGCTTGGAGAAGAGGGGCACTGTCTTGTATTTATTTGGAAACTCTTGCCACAGCTATCAATCTTGGCTAATGTTAGCCAATCGACTGGCACGTTTCGTCAATGAGTGATTGCCACTCCACATTTATTGCTTATATAGGCCTCTCCTATTGAtataatatatctactgtatctctgttaCGTTATGCAATGCTTCTGAGGAGAGGGATTGATGCCATATTAATGTAATAATAGTATTCACAACTGGACATGTTTTCTCAGCTGGTCTTCGTCTAGTCTGGGGAAATGACAGACACTCACAAATCAGACCCCATACAACAAACTGCAAACTGCCTTTTACATGTGTGATAGTATCAGGCCTGTGGTCTGAGATGAAGCACACACAGGGTCATAATAGTAACGTATGGAATCCCAATGCCACAGGCACACAGCAGCACACAGTTTACAGTATTTATTATGAGACGCTACCGCTGTTCATCTCCTCcctgtacatttatttttttgtataagATTTAAATGTATAAAACTATGTATGATTGTCGAATTAAAGTTAAGTCCTCCTTTGCCAAGGCTTGTAGCGCTGTTGGTTGAGTTATGGGGAGGCGTTTTTCTCCTAAATA
>XM_021571646.2
ACTTCTCACCGAGCATGTGCGACTACCGGAGGGGGCGCGAGAGGGAACGGGAGGAGTCGTACCGAAGGAAGGGCAGCAGGCGTAAGCACAAACGAAGGCGGCGTAGAACCAGGTCCTATAGCCCATCCTCCTCGaTGAGATTGTCAGCACTCTGGGGGAAGGCACCTTTGGGAGGGTGATGCAATGTATTGACCATCGTCGGGGAGGGGCCGCTGTTGCTCTGAAGATCATAAAAAATGTGGAGAAATACAAGGAAGCAGCTCGTCTGGAGATCAATGTGCTGGAGAGAATCAATGAGAAAGATCCGGAAAACAAACACCTGTGTGTGCAGATGTATGACTGGTTCGACTACCACGGCCACATGTGTATCTCCTTCGAGCTGCTGGCCCTCAGCACCTTCGACTTCCTCAAGGAGAACAACTACCTGCCCTATTCCATCGCCCAGGTCCGACACATGGCCTACCAGCTCTGCCTGTCCGTCAAGTTTCTTCATGATACCAAGTTGACGCACACAGACCTGAAGCCAGAAAACATCCTGTTTGTCAATTCCGACTTCACTATGACCTATAATGTAGAGAAGAAGCGCGACGAGCGGACAGTGAAGAGCACGGACGTACGGGTGGTGGACTTTGGTAGCGCCACATTTGACCATGAGCACCACAGCACCATCGTCTCCACACGGCACTACCGCGCCCCGGAAGTCATACTAGAGCTGGGCTGGAGCCAGCCGTGTGATGTGTGGAGCATCGGTTGCATCCTGTTCGAGTACTACCTGGGCTTCACCTTGTTCCAGACTCATGATAACAGGGAGCAtctggccatgatggagagaatACTGGGGCCGGTGCCCTCCAGAATGATACGCAAGACAAGGAAGCAGAAATATTTTTACCGTGGCCGTCTGGACTGGGACGAGAGCTCGTCAGCTGGGAGATACGTGAGGGAGAACTGCAAACCCTTACGGAGGTACCTGTTGTCGGAAGCCGAGGAGCACCATCGGTTGTTTGACCTGATTGAGAGCATGCTGGAATACGAGCCCGCTAAGCGCCTGGCCCTGGCAGACTCCCTCAGACACCCTTTCTTCGAATCGGGGACAGCAGGCGATGCAGTGGGGGGGAAGAGCTGGGAGGGCAACCGCGACATCAGCCGGTGACCCGGGACCTCCACAGACTCTTAACGATAGAGCGATTTTTCAGGTGGAGCAGACCGATACGACCACTTCAGGCGGTACGGCCAAATTTGATGGACCTTATCAGTCTGTCTGAAATCCCTTGGCCATTCATCACAGCATGGACCCATTTCCTCCTGCTTACTGTACTGCCCCCACCCATCTCCACAGTTAGGAGAGAGGCTCATGCTGGCAGCTAGAAAACCAGAAGGACTTCAGAAAAAGACAGCCCTCCTTT

Function

NR:

description
PREDICTED: dual specificity protein kinase CLK2-like isoform X1

GO: NA

KEGG:

id description
K08823 CLK2_3; dual specificity protein kinase CLK2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571645.2 False 2006 mRNA 0.56 13 32008229 32020029
XM_021571644.2 False 3145 mRNA 0.52 13 32009957 32020839
XM_021571646.2 True 1406 mRNA 0.54 10 32011959 32020029

Neighbor

gene id symbol gene type direction distance location
LOC110496022 LOC106588190 coding upstream 278 31985755 ~ 32007951 (+)
LOC110496020 LOC106588189 coding upstream 55688 31924273 ~ 31952541 (+)
LOC110496019 LOC106588188 coding upstream 88806 31881946 ~ 31919423 (+)
LOC110496018 LOC106588187 coding upstream 150212 31813905 ~ 31858017 (+)
LOC110496017 LOC106588186 coding upstream 196043 31807769 ~ 31812186 (+)
LOC118941132 NA coding downstream 37213 32058052 ~ 32064812 (+)
LOC110496027 LOC106588195 coding downstream 320870 32341709 ~ 32351799 (+)
LOC110496028 NA coding downstream 331216 32352055 ~ 32361876 (+)
LOC118941135 NA coding downstream 553117 32573956 ~ 32659643 (+)
LOC110496032 LOC106588200 coding downstream 699510 32720349 ~ 32964969 (+)
G1538342 NA non-coding upstream 16161 31991022 ~ 31992068 (+)
G1538326 NA non-coding upstream 25195 31982609 ~ 31983034 (+)
G1538330 NA non-coding upstream 28766 31979230 ~ 31979463 (+)
G1538323 NA non-coding upstream 37473 31970502 ~ 31970756 (+)
G1538317 NA non-coding upstream 42208 31963832 ~ 31966021 (+)
G1538336 NA non-coding downstream 4945 32025784 ~ 32079330 (+)
G1538382 NA non-coding downstream 59410 32080249 ~ 32080726 (+)
G1538974 NA non-coding downstream 229348 32250187 ~ 32250417 (+)
G1539280 NA non-coding downstream 485170 32506009 ~ 32506227 (+)
G1539310 NA non-coding downstream 510251 32531090 ~ 32531297 (+)
G1538208 LOC106588182 other upstream 254038 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 427909 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 435990 31568375 ~ 31572239 (+)
G1537251 NA other upstream 1180183 30822508 ~ 30828046 (+)
G1536720 NA other upstream 1710883 30297131 ~ 30297346 (+)
G1539641 NA other downstream 999389 33020228 ~ 33020544 (+)
G1539671 LOC106582599 other downstream 1038151 33058990 ~ 33059857 (+)
LOC110496797 LOC106570068 other downstream 1434721 33455560 ~ 33458964 (+)
G1540551 NA other downstream 1468498 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 1514437 33535229 ~ 33537569 (+)

Expression


Co-expression Network