atp5if1a (LOC106588193)


Basic Information

Item Value
gene id atp5if1a
gene name LOC106588193
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32057280 ~ 32058819 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952512.1
TGTCTAATAAATGCTATGTTACATTTAACCCAATGCTCTCTTTTCATAATATATATTCAGctggGTGAGCTGGGCAAAGGAGCAGGAAAGGGAGGCGGTGGAGGAGGCTCGGTGAGGGAGGCAGGTGGTGCCTTTGGAAAGAAGCAAGCTGCAGAGGAGGAGCGTTATTTTCGTCAGAAGGAGAAGGAGCAGTTGTCTGCCCTACGGAAGCACCATGAAGAGGAGATTGACCACAGCAAGAAAGAAATTGAGCGTTTGCAGCGTGAGATTGACCGTCACAAGGGCAAAATCAAGAAACTGAAACATGATGACTAAGCTCAGTCTTCATTCACACTGCTTACATTAGGCCAAATATCACCCATTTGCCTGATTTTGTGTTTTTAGGCAATTGTATAATAGTTACATTCAAAACAATAATAAAACACTAGTTGTTTTCCAACTGG
>XM_021571651.2
GTCGCTAGATGACAGCAAATCGTTTTCCCAGCCACTCCCACACAGTGAAATTGCACATTTCCGCATGTGAAAGTACACAGCGAAGTACTTTCTGCTGCAGCAGGGCTGTTAATCTGCGTAGTTGAGAAATTGTAATGGCGAGGCTACTATTAAGATCCAATTTTCGGGGCTTCTTTGCCACCCAATTCAGGATGACATCCGACCAGctggGTGAGCTGGGCAAAGGAGCAGGAAAGGGAGGCGGTGGAGGAGGCTCGGTGAGGGAGGCAGGTGGTGCCTTTGGAAAGAAGCAAGCTGCAGAGGAGGAGCGTTATTTTCGTCAGAAGGAGAAGGAGCAGTTGTCTGCCCTACGGAAGCACCATGAAGAGGAGATTGACCACAGCAAGAAAGAAATTGAGCGTTTGCAGCGTGAGATTGACCGTCACAAGGGCAAAATCAAGAAACTGAAACATGATGACTAAGCTCAGTCTTCATTCACACTGCTTACATTAGGCCAAATATCACCCATTTGCCTGATTTTGTGTTTTTAGGCAATTGTATAATAGTTACATTCAAAACAATAATAAAACACTAGTTGTTTTCCAACTGG
>TU1761118
CTCCCACACAGTGAAATTGCACATTTCCGCATGTGAAAGTACACAGCGAAGTACTTTCTGCTGCAGCAGGGCTGTTAATCTGCGTAGTTGAGAAATTGTAATGGCGAGGCTACTATTAAGATCCAATTTTCGGGGCTTCTTTGCCACCCAATTCAGGATGACATCCGACCAGctggGTGAGCTGGGCAAAGGAGCAGGAAAGGGAGGCGGTGGAGGAGGCTCGGTGAGGGAGGCAGGTGGTGCCTTTGGAAAGAAGCAAGCTGCAGAGGAGGAGCGTTATTTTCGTCAGAAGGAGAAGGAGCAGTTGTCTGCCCTACGGAAGCACCATGAAGAGGAGATTGACCACAGCAAGAAAGAAATTGAGCGTTTGCAGCGTGAGATTGACCGTCACAAGGGCAAAATCAAGAAACTGAAACATGATGACTAAGCTCAGTCTTCATTCACACTGCTTACATTAGGCCAAATATCACCCATTTGCCTGATTTTGTGTTTTTAGGCAATTGTATAATAGTTACATTCAAAAC

Function

NR:

description
ATPase inhibitor A, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952512.1 False 443 mRNA 0.43 3 32057280 32058262
XM_021571651.2 False 589 mRNA 0.46 3 32057280 32058819
TU1761118 True 524 TUCP 0.47 3 32057311 32058785

Neighbor

gene id symbol gene type direction distance location
LOC110496024 LOC106588192 coding downstream 401 32037155 ~ 32056879 (-)
dnjc8 dnjc8 coding downstream 24745 32026557 ~ 32032535 (-)
LOC110496016 LOC106588185 coding downstream 254462 31797068 ~ 31802818 (-)
LOC110496014 LOC106588184 coding downstream 272688 31779264 ~ 31784592 (-)
LOC110496013 LOC106588183 coding downstream 279950 31771612 ~ 31777330 (-)
LOC110496026 LOC106588194 coding upstream 28408 32087227 ~ 32114802 (-)
LOC118941048 NA coding upstream 113729 32172548 ~ 32173426 (-)
LOC118941133 NA coding upstream 277802 32336621 ~ 32347681 (-)
LOC110496030 LOC106588196 coding upstream 306773 32365592 ~ 32417823 (-)
eomesa eomesa coding upstream 391182 32450001 ~ 32454383 (-)
G1538729 NA non-coding downstream 34517 32021457 ~ 32022763 (-)
G1538746 NA non-coding downstream 74350 31982540 ~ 31982930 (-)
G1538745 NA non-coding downstream 76139 31980536 ~ 31981141 (-)
G1538744 NA non-coding downstream 77484 31979531 ~ 31979796 (-)
G1538735 NA non-coding downstream 92686 31964005 ~ 31964594 (-)
G1538783 NA non-coding upstream 21034 32079853 ~ 32080084 (-)
G1538803 NA non-coding upstream 67790 32126609 ~ 32126919 (-)
G1538810 NA non-coding upstream 71935 32130754 ~ 32131032 (-)
G1538822 NA non-coding upstream 80047 32138866 ~ 32139078 (-)
G1538824 NA non-coding upstream 80667 32139486 ~ 32139822 (-)
G1538595 NA other downstream 342099 31714506 ~ 31715181 (-)
LOC100136047 LOC106605923 other downstream 364609 31684840 ~ 31692733 (-)
LOC110496004 LOC106588173 other downstream 533824 31492852 ~ 31524883 (-)
LOC110495994 LOC106588168 other downstream 1043104 31008756 ~ 31014201 (-)
LOC110495992 LOC106588166 other downstream 1103972 30911827 ~ 30955199 (-)
G1539348 NA other upstream 502907 32561726 ~ 32562120 (-)
G1540148 NA other upstream 840759 32899578 ~ 32936569 (-)
G1540473 LOC106581475 other upstream 1332520 33391339 ~ 33391752 (-)
LOC110496048 LOC106588215 other upstream 1543655 33602474 ~ 33610948 (-)
LOC110496049 LOC106588217 other upstream 1598822 33657641 ~ 33674304 (-)

Expression


Co-expression Network