LOC110496028


Basic Information

Item Value
gene id LOC110496028
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32352055 ~ 32361876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571655.2
CCATATGGTGAATGTGGTATGCCACAAGTGTGGTACGCGTTCCCTTTGACTAGTGATTCAGAACCACGTGATACGCGACCCTTTCAACCCAGACATGAATATTAGCTAATGTTTTTAATACGCATTCATAAATGACTGCGCAGCAGAACCGTTTTAGAAGAATGCTGATCCTGGGTTTCCATGGTTGCTAGTTCAATTGCGGTGCGTCCTTTGAACTTGAGTGGCCAGAAAAATGGCATTTAGCAAACTAACGTTAGCTCATTTTAACTTTTGACAAAGAAAATAACAATTTGAAAATACTGAAACGAGTTCCTACCTGGTGTATCTACCACTTATGTCATATTTTGAGACATTCTCGGACATGGCTATGAAGACTCGCCGGTCAGGCGACCAGGCCCAGTTTTGCCCTGAAAGTGACGAGGAATTGTTCAACTCAACCAAAGACATCCCAAATGATGGAAAGGGTAAACGCGTTGCATTTGCTCTTCATGTCAACAAACGACAAGCACGAAAATGTGTTTCTCTCTGCGTTTTGCAAACCGAAGATGGCGTTTCTGACGGGTCTGACTCTGCTTTTATTCGAGATAAAGTAGGCATAACTGTGCGGTATTTTATGAACATTGGAATCACAGTCATTATTGCTGTCTTGGCTGGACTTCTACATTGGGCTCATCTAACAAACCTCTTTGAAAATGACAAACATTTTTCACACCTATCTTCGATTGAAAAAGAAATGGCTTTCCGCACTGAAATGGTTTTCCTTGGCAGCCTGTTCAGGATTTACACTGGCATCATGGACTTCTTTGGAATCCCCACCAAGGCATGTTGGAATGTCAACAGAGCAGATGGACTGAATCCAGTAGAGAGCTGTGAAGGCATGGGGGATGCAGCCTACTTCTATGTCTCCTGTGTCTTCCTGCTTAATGGGGTAATGATGAGCCTGTTCTACATCTACGGGACTTACCTAAGTGGCAGTCGTCTTGGAGGGGTCGTCACTGTCCTGTGTCTCTTCTTCAACCATGGAGAGAGCACTCGGGTCATGTGGACTCCACCGCTGAGGGAGAGCTTCTCCTATCCCTTCTTTGTCCTGCAGATGCTGCTGTTAACACGCATTCTCAGGCGTTCCAAACTTGAAAGAAGATCCCTAGTAGCTCTTGGTGCTTGCAATGTGTTGTTCCTTCTTCCTTGGCCATTTGCCCAGTTTGTTTTGCTAACTCAGATTGCATGCCTGTTTGCATGTTATTTTATGGGCTATCTCTCCACTTCCAAGATGAAATCACTACTTGTTGTGCATTTGGCTTCATTTGCCATCTGCTTTGTCATGCTGTTTGGGAAATTGGAACTTTTGACATCTTTTTACATTTCTTCCCTGGTTGCTGGCTGGGCCATCATCGCACTGAGAGACGATATCACAAGAGTCTGCAAACTTGGAATCGTCACAATTTTTGTTCAAGGTATTGCCTGGTTTACCTCCACTGTGCTTCTCAAATTCTTCATTTCGTTCATCCTCGGAGCGTCCAATGATGCTCACATTGGCAACTTGATCAGATCCAAGTTGACCAACTACAAGGATTTCCACACGTTGATGTACACCTGTGCTGCAGAGTTCGACTTTATTGAGCTGGAGACTTTGTTGGGATACGTTAAGACATTGATACTCCCGGTAAACATAGTTATTGTAGCCATCATTTCTGGAAAGGCAATTAAAGAAGTCTGGAGATCTCTTAGGCGCGAAAGAGTTGACTCTAAAGAAGACGTCGATATTGACACTGAGCAGATGGCACAGTTTGCTAATGGGGAGaTGGTGTACCATAGTCTGCAGCTGGTGGCCTTTGCCGTGCTGGCGATCTTGGTCATGAGAATCAAACTCTTCCTAGCCCCGCTGATGTGCCTCATGGCCTCCCTGATCTGCTCTAGACAGTTGTTTGGCTGGATAGGGGAGCACTTCAAGTCCCACATCACTGTGTTTGGCATCCTGTCCATCATGGCCATCCAGGGCGTGGCCAACTTCCAGAGCCAGCGAGGAATCGTAGGAGACTTCAGCAACCTGCCTCAGGAGCAGCTCCTGGAGTGGATCAATGCCAACACCATGCCCAATGCTGTGTTTGCTGGCTCCATGCCAACCATGGCGAGTGTGAAACTGTCCACTGGTAGAGCCGTCGTGAATCATCCCCACTACGAGGACACTTGGCAGAAGGAAAGAACCAAGTTGGTGTACACCATGTACAGCCGTAAACCGGCCAAGGAGGTGAAGAGGAATCTGATGCAGCTGCAGGCAGACTATTTCATCCTGGAGGACTCCTGGTGTAACCGACGCTCCAGGCCAGGCTGCAGCATGCCTGAGATCTGGGACGTGGAGGATCAGGAGAACAGAGGAAAGTTGCCGCTATGTACCCTCCTATCCATCGACTCCCGACCTCACTTCACCACAATGTTCGAGAATAAAGTCTACAAGGTGCTGAAAATCCCCAAAGATGCCAAATAGGACCTTTTAATATAGGGACATCATTTtgattaaacatgttcaatttc
>XM_036952514.1
CCATATGGTGAATGTGGTATGCCACAAGTGTGGTACGCGTTCCCTTTGACTAGTGATTCAGAACCACGTGATACGCGACCCTTTCAACCCAGACATGAATATTAGCTAATGTTTTTAATACGCATTCATAAATGACTGCGCAGCAGAACCGTTTTAGAAGAATGCTGATCCTGGGTTTCCATGGTTGCTAGTTCAATTGCGGTGCGTCCTTTGAACTTGAGTGGCCAGAAAAATGGCATTTAGCAAACTAACGTTAGCTCATTTTAACTTTTGACAAAGAAAATAACAATTTGAAAATACTGAAACGAGTTCCTACCTGGTGTATCTACCACTTATGTCATATTTTGAGACATTCTCGGACATGGCTATGAAGACTCGCCGGTCAGGCGACCAGGCCCAGTTTTGCCCTGAAAGTGACGAGGAATTGTTCAACTCAACCAAAGACATCCCAAATGATGGAAAGGGTAAACGCGTTGCATTTGCTCTTCATGTCAACAAACGACAAGCACGAAAATGTGTTTCTCTCTGCGTTTTGCAAACCGAAGATGGCGTTTCTGACGGGTCTGACTCTGCTTTTATTCGAGATAAAGTAGGCATAACTGTGCGGTATTTTATGAACATTGGAATCACAGTCATTATTGCTGTCTTGGCTGGACTTCTACATTGGGCTCATCTAACAAACCTCTTTGAAAATGACAAACATTTTTCACACCTATCTTCGATTGAAAAAGAAATGGCTTTCCGCACTGAAATGGGTCTGTATTATTCCTATTTCAAGATCTTCATCAACGCGCCATCCTTTTTGCATGGTCTCCACTTGATCATGAATGACAGGTTCTCTGAGTATCCTCTTGTTATCAATGCTCTGAAGAGGTTCAATCTGTACCCAGAGGTTTTCCTTGGCAGCCTGTTCAGGATTTACACTGGCATCATGGACTTCTTTGGAATCCCCACCAAGGCATGTTGGAATGTCAACAGAGCAGATGGACTGAATCCAGTAGAGAGCTGTGAAGGCATGGGGGATGCAGCCTACTTCTATGTCTCCTGTGTCTTCCTGCTTAATGGGGTAATGATGAGCCTGTTCTACATCTACGGGACTTACCTAAGTGGCAGTCGTCTTGGAGGGGTCGTCACTGTCCTGTGTCTCTTCTTCAACCATGGAGAGAGCACTCGGGTCATGTGGACTCCACCGCTGAGGGAGAGCTTCTCCTATCCCTTCTTTGTCCTGCAGATGCTGCTGTTAACACGCATTCTCAGGCGTTCCAAACTTGAAAGAAGATCCCTAGTAGCTCTTGGTGCTTGCAATGTGTTGTTCCTTCTTCCTTGGCCATTTGCCCAGTTTGTTTTGCTAACTCAGATTGCATGCCTGTTTGCATGTTATTTTATGGGCTATCTCTCCACTTCCAAGATGAAATCACTACTTGTTGTGCATTTGGCTTCATTTGCCATCTGCTTTGTCATGCTGTTTGGGAAATTGGAACTTTTGACATCTTTTTACATTTCTTCCCTGGTTGCTGGCTGGGCCATCATCGCACTGAGAGACGATATCACAAGAGTCTGCAAACTTGGAATCGTCACAATTTTTGTTCAAGGTATTGCCTGGTTTACCTCCACTGTGCTTCTCAAATTCTTCATTTCGTTCATCCTCGGAGCGTCCAATGATGCTCACATTGGCAACTTGATCAGATCCAAGTTGACCAACTACAAGGATTTCCACACGTTGATGTACACCTGTGCTGCAGAGTTCGACTTTATTGAGCTGGAGACTTTGTTGGGATACGTTAAGACATTGATACTCCCGGTAAACATAGTTATTGTAGCCATCATTTCTGGAAAGGCAATTAAAGAAGTCTGGAGATCTCTTAGGCGCGAAAGAGTTGACTCTAAAGAAGACGTCGATATTGACACTGAGCAGATGGCACAGTTTGCTAATGGGGAGaTGGTGTACCATAGTCTGCAGCTGGTGGCCTTTGCCGTGCTGGCGATCTTGGTCATGAGAATCAAACTCTTCCTAGCCCCGCTGATGTGCCTCATGGCCTCCCTGATCTGCTCTAGACAGTTGTTTGGCTGGATAGGGGAGCACTTCAAGTCCCACATCACTGTGTTTGGCATCCTGTCCATCATGGCCATCCAGGGCGTGGCCAACTTCCAGAGCCAGCGAGGAATCGTAGGAGACTTCAGCAACCTGCCTCAGGAGCAGCTCCTGGAGTGGATCAATGCCAACACCATGCCCAATGCTGTGTTTGCTGGCTCCATGCCAACCATGGCGAGTGTGAAACTGTCCACTGGTAGAGCCGTCGTGAATCATCCCCACTACGAGGACACTTGGCAGAAGGAAAGAACCAAGTTGGTGTACACCATGTACAGCCGTAAACCGGCCAAGGAGGTGAAGAGGAATCTGATGCAGCTGCAGGCAGACTATTTCATCCTGGAGGACTCCTGGTGTAACCGACGCTCCAGGCCAGGCTGCAGCATGCCTGAGATCTGGGACGTGGAGGATCAGGAGAACAGAGGAAAGTTGCCGCTATGTACCCTCCTATCCATCGACTCCCGACCTCACTTCACCACAATGTTCGAGAATAAAGTCTACAAGGTGCTGAAAATCCCCAAAGATGCCAAATAGGACCTTTTAATATAGGGACATCATTTtgattaaacatgttcaatttcaa

Function

NR:

description
probable C-mannosyltransferase DPY19L1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571655.2 False 2532 mRNA 0.46 21 32352055 32361874
XM_036952514.1 True 2672 mRNA 0.46 22 32352055 32361876

Neighbor

gene id symbol gene type direction distance location
LOC110496027 LOC106588195 coding upstream 256 32341709 ~ 32351799 (+)
LOC118941132 NA coding upstream 287243 32058052 ~ 32064812 (+)
LOC110496023 LOC106588191 coding upstream 331216 32008229 ~ 32020839 (+)
LOC110496022 LOC106588190 coding upstream 344104 31985755 ~ 32007951 (+)
LOC110496020 LOC106588189 coding upstream 399514 31924273 ~ 31952541 (+)
LOC118941135 NA coding downstream 212080 32573956 ~ 32659643 (+)
LOC110496032 LOC106588200 coding downstream 358473 32720349 ~ 32964969 (+)
LOC110496033 LOC106588201 coding downstream 632658 32994534 ~ 33050381 (+)
LOC110496034 LOC106588202 coding downstream 724725 33086601 ~ 33172114 (+)
LOC110496035 tmem42 coding downstream 990919 33352795 ~ 33356691 (+)
G1538974 NA non-coding upstream 101638 32250187 ~ 32250417 (+)
G1538382 NA non-coding upstream 271329 32080249 ~ 32080726 (+)
G1538336 NA non-coding upstream 272725 32025784 ~ 32079330 (+)
G1538342 NA non-coding upstream 359987 31991022 ~ 31992068 (+)
G1538326 NA non-coding upstream 369021 31982609 ~ 31983034 (+)
G1539280 NA non-coding downstream 144133 32506009 ~ 32506227 (+)
G1539310 NA non-coding downstream 169214 32531090 ~ 32531297 (+)
G1539311 NA non-coding downstream 170945 32532821 ~ 32533074 (+)
G1539325 NA non-coding downstream 182435 32544311 ~ 32544531 (+)
G1539329 NA non-coding downstream 186072 32547948 ~ 32548190 (+)
G1538208 LOC106588182 other upstream 597864 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 771735 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 779816 31568375 ~ 31572239 (+)
G1537251 NA other upstream 1524009 30822508 ~ 30828046 (+)
G1536720 NA other upstream 2054709 30297131 ~ 30297346 (+)
G1539641 NA other downstream 658352 33020228 ~ 33020544 (+)
G1539671 LOC106582599 other downstream 697114 33058990 ~ 33059857 (+)
LOC110496797 LOC106570068 other downstream 1093684 33455560 ~ 33458964 (+)
G1540551 NA other downstream 1127461 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 1173400 33535229 ~ 33537569 (+)

Expression


Co-expression Network