LOC110496033 (LOC106588201)


Basic Information

Item Value
gene id LOC110496033
gene name LOC106588201
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32994534 ~ 33050381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571664.2
TCGCTGAGGAGGATGCATCAGGGGAGGGACTGGAATCAACTGAAAGGAAATCGCCACTGAGCGAGAATGACGTGACTTACCATTCATCTCCTGAATAATTAAAGGGCTCTCGTCGATGAACATGCTGAAGCTGAAGCGTCTGTGTAAGTTCTGTGACGTGGAGTCTACCAGCTGCACGGGCACAGGGAGCTGTATGGCCGACTGTAGCATCACATCCATCTGCCCCCATCCAGAGGATGTGTGTGTCAGCATCTGGAGGAAGAAAGACGACAACGTCACCATAGACACGATATGCCACAACCCAGCCCATAAGTTGCATGGTCTGGTGCTGGAGGACTATAACAACAGCAAGtgtgagatgagggagaggaatgGCATGGGCTCCCAGTTCTTCATCTGCTCTTGCTCCGAGGACGAGTGCAACAACCACGTGTTCTTCACTCCCTACTCTCTTGACCCCCAGGTGGTGTCGGTGATCCTggtcagcctggttcctctgctGGTTCTGGCCATGCTGGTCATCACATCCTTCTATTGGTACCGCATCTACCACCAGCGCCACGCCGGTGCCAAGCGCAAGAAGACGCCTCTCGACTTCAGCGACGCCCGCGCCATCATGATGGATGACGACGGCTCGGACAGCAGCTCCACGCACGCCAACAACCTCAACCACAACACGGAGCTCCTCCCCATTGAGCTGGACGCCCAGGTGGGCAAGGGCCGCTTCGCCGAGGTCTACAAGGCCAAGCTGAAGCAGGGCGCCACGGGAGCCGGTGAGCCCTTCGAGACCGTCGCCGTCAAGATTTTCGCAGATGAAGAGTATGCCTCGTGGAAGAACGAGAAGGACATCTTCTCGGACGCTGACCTGCGCCACGAGAACGTCCTGCACTTCCTGACAGCGGAGGAACGTAAGGTGGAGAAACAGTATTGGCTGATCACGGCCTACCACCCCCGGGGCAACCTCCAGGAGTACCTGACGCGCCACGTCATCAGCTGGGACGACCTGTGGGCGCTGGGCAGGTCGCTGGCGAGGGGCGTGGCCCACCTGCACAGTGACCACACGTTGTGCGGACGCTACAAGGTGCCAATCGTCCACCGGGACATCAAGAGCTCCAACATCCTGGTGAAAGGGGACCTCACCTGCGTCCTGTGTGACTTCGGCCTGGGTCTGCGTCTGGACAACTCGCTGTCCGTGGACGAGCTGgccaacagtggacagGTGGGCACTGCCAGGTACATGGCCCCTGAGGTGCTGGAGTCCAGGATCAACCTGGAGAACATCGAGTCATTCAAGCAGACAGACGTCTACTCCATGGCCCTGGTACTGTGGGAGATCACCTCCAGGTGCAATGCCATTGGAGagGTAAAGGACTACGAGCCCCCATTCGGTAAGGTGAGGGAGCACCCGTGTGTGGAGAGTATGAAGGACAGCGTACTCAGAGACAGGGGACGACCAGAGATCCCCAGCAGTTGGATCAACCACCCAGGCATCCAGGTGGTGTGTGGCACGATAGACGAGTGCTGGGACCACGACCCCGAGGCCAGGCTGACTGCACAGTGTGTGGCCGAACGCTTCAATGACATGGAGCACCCAGACAAGCTGTCTGGACGCAGCAACTCAGAGGAGAAGATCCCCCAGGACATCTCTGTGACGGAGTTTGAAGAGATTGAGAAGAAGGAAGTATGCCTCAGAAACTACAATGCCCCTGTCGAGGAGGCTGAGAACTACAATCAACCAAGCAGCTGAGAGAGATTTAAGTGGAGAGTCTCTTTGTATATGCTCCGTTTATTTGTCCTGCTTGTGACTCCAAGGAACAAACAGATTGGCTGTTGTGTGTCATGGATGTAAAAGGGAACAAAACTGAACAATCCAATCAGCAAGGAatttatctttttttattttttatatttacagCATTTTCTCCAAAGACGGATTAAAGCCATGACTGGACTGGTGAAAATATAAAGCCCTCTTAACTAAATACTGTTCGCACTTTATCAATAGCTATGCATACCAaatgatgtacagtaccagtcaaaagttgacacacctactcattccaggattttcctttatttgtactattttctacattgtagaataatagtgaagacatcaaaactatgaattaacacatatggaa
>XM_021571663.2
TGAGCTACAAGCCCAGCAGTTCAGAAGTAGcctaaagaagaagaaaaaagagtCCTGCCCTTTCTGAAGATTTCCTGTTTCATGAAAGTGCATACATACTGTCTGACTCATATGCGGCAAATTCTGACTGCACTATTTACTTTAACACCGGGTTCCTTGAGACGCATGAGAGCAACAGGCAGACGGAAAAAATAAATCCGAAGAACGTCTCGAATTAAAGTCTGGATATTTACTATAATCAAGCTGCTAGTAAATGAAAAGAAGAGTCGTTTGTAATCCGTCTTTAAATGGAGCTACTTCGGTTTTCTGCTTTCTGGTGTGGAACGATACTCTTTGGTAGTGTTCTGCTAGAACAGATGGGGCTCTCGTCGATGAACATGCTGAAGCTGAAGCGTCTGTGTAAGTTCTGTGACGTGGAGTCTACCAGCTGCACGGGCACAGGGAGCTGTATGGCCGACTGTAGCATCACATCCATCTGCCCCCATCCAGAGGATGTGTGTGTCAGCATCTGGAGGAAGAAAGACGACAACGTCACCATAGACACGATATGCCACAACCCAGCCCATAAGTTGCATGGTCTGGTGCTGGAGGACTATAACAACAGCAAGtgtgagatgagggagaggaatgGCATGGGCTCCCAGTTCTTCATCTGCTCTTGCTCCGAGGACGAGTGCAACAACCACGTGTTCTTCACTCCCTACTCTCTTGACCCCCAGGTGGTGTCGGTGATCCTggtcagcctggttcctctgctGGTTCTGGCCATGCTGGTCATCACATCCTTCTATTGGTACCGCATCTACCACCAGCGCCACGCCGGTGCCAAGCGCAAGAAGACGCCTCTCGACTTCAGCGACGCCCGCGCCATCATGATGGATGACGACGGCTCGGACAGCAGCTCCACGCACGCCAACAACCTCAACCACAACACGGAGCTCCTCCCCATTGAGCTGGACGCCCAGGTGGGCAAGGGCCGCTTCGCCGAGGTCTACAAGGCCAAGCTGAAGCAGGGCGCCACGGGAGCCGGTGAGCCCTTCGAGACCGTCGCCGTCAAGATTTTCGCAGATGAAGAGTATGCCTCGTGGAAGAACGAGAAGGACATCTTCTCGGACGCTGACCTGCGCCACGAGAACGTCCTGCACTTCCTGACAGCGGAGGAACGTAAGGTGGAGAAACAGTATTGGCTGATCACGGCCTACCACCCCCGGGGCAACCTCCAGGAGTACCTGACGCGCCACGTCATCAGCTGGGACGACCTGTGGGCGCTGGGCAGGTCGCTGGCGAGGGGCGTGGCCCACCTGCACAGTGACCACACGTTGTGCGGACGCTACAAGGTGCCAATCGTCCACCGGGACATCAAGAGCTCCAACATCCTGGTGAAAGGGGACCTCACCTGCGTCCTGTGTGACTTCGGCCTGGGTCTGCGTCTGGACAACTCGCTGTCCGTGGACGAGCTGgccaacagtggacagGTGGGCACTGCCAGGTACATGGCCCCTGAGGTGCTGGAGTCCAGGATCAACCTGGAGAACATCGAGTCATTCAAGCAGACAGACGTCTACTCCATGGCCCTGGTACTGTGGGAGATCACCTCCAGGTGCAATGCCATTGGAGagGTAAAGGACTACGAGCCCCCATTCGGTAAGGTGAGGGAGCACCCGTGTGTGGAGAGTATGAAGGACAGCGTACTCAGAGACAGGGGACGACCAGAGATCCCCAGCAGTTGGATCAACCACCCAGGCATCCAGGTGGTGTGTGGCACGATAGACGAGTGCTGGGACCACGACCCCGAGGCCAGGCTGACTGCACAGTGTGTGGCCGAACGCTTCAATGACATGGAGCACCCAGACAAGCTGTCTGGACGCAGCAACTCAGAGGAGAAGATCCCCCAGGACATCTCTGTGACGGAGTTTGAAGAGATTGAGAAGAAGGAAGTATGCCTCAGAAACTACAATGCCCCTGTCGAGGAGGCTGAGAACTACAATCAACCAAGCAGCTGAGAGAGATTTAAGTGGAGAGTCTCTTTGTATATGCTCCGTTTATTTGTCCTGCTTGTGACTCCAAGGAACAAACAGATTGGCTGTTGTGTGTCATGGATGTAAAAGGGAACAAAACTGAACAATCCAATCAGCAAGGAatttatctttttttattttttatatttacagCATTTTCTCCAAAGACGGATTAAAGCCATGACTGGACTGGTGAAAATATAAAGCCCTCTTAACTAAATACTGTTCGCACTTTATCAATAGCTATGCATACCAaatgatgtacagtaccagtcaaaagttgacacacctactcattccaggattttcctttatttgtactattttctacattgtagaataatagtgaagacatcaaaactatgaattaacacatatggaa

Function

NR:

description
TGF-beta receptor type-2-like isoform X1

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005026 transforming growth factor beta receptor activity, type II molecular_function

KEGG:

id description
K04388 TGFBR2; TGF-beta receptor type-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571664.2 False 2144 mRNA 0.53 7 32994534 33050381
XM_021571663.2 True 2400 mRNA 0.52 7 33029291 33050381

Neighbor

gene id symbol gene type direction distance location
LOC110496032 LOC106588200 coding upstream 35476 32720349 ~ 32964969 (+)
LOC118941135 NA coding upstream 334975 32573956 ~ 32659643 (+)
LOC110496028 NA coding upstream 632658 32352055 ~ 32361876 (+)
LOC110496027 LOC106588195 coding upstream 642735 32341709 ~ 32351799 (+)
LOC118941132 NA coding upstream 929722 32058052 ~ 32064812 (+)
LOC110496034 LOC106588202 coding downstream 36220 33086601 ~ 33172114 (+)
LOC110496035 tmem42 coding downstream 302414 33352795 ~ 33356691 (+)
exosc7 exosc7 coding downstream 330209 33380590 ~ 33389754 (+)
nrm nrm coding downstream 370453 33420834 ~ 33426552 (+)
LOC110496040 LOC106588209 coding downstream 382985 33433366 ~ 33450101 (+)
G1539622 NA non-coding upstream 23724 32970460 ~ 32970810 (+)
G1539583 NA non-coding upstream 84907 32909082 ~ 32909627 (+)
G1539438 NA non-coding upstream 299899 32694327 ~ 32694635 (+)
G1539625 NA non-coding downstream 53 33050434 ~ 33051933 (+)
G1539669 NA non-coding downstream 4045 33054426 ~ 33054847 (+)
G1539674 NA non-coding downstream 16400 33066781 ~ 33067011 (+)
G1539677 NA non-coding downstream 19546 33069927 ~ 33070147 (+)
G1539824 NA non-coding downstream 242330 33292711 ~ 33386401 (+)
G1538208 LOC106588182 other upstream 1240343 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 1414214 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 1422295 31568375 ~ 31572239 (+)
G1537251 NA other upstream 2166488 30822508 ~ 30828046 (+)
G1536720 NA other upstream 2697188 30297131 ~ 30297346 (+)
G1539671 LOC106582599 other downstream 8609 33058990 ~ 33059857 (+)
LOC110496797 LOC106570068 other downstream 405179 33455560 ~ 33458964 (+)
G1540551 NA other downstream 438956 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 484895 33535229 ~ 33537569 (+)
G1540996 NA other downstream 1028337 34078718 ~ 34079074 (+)

Expression


Co-expression Network