LOC110496035 (tmem42)


Basic Information

Item Value
gene id LOC110496035
gene name tmem42
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33352795 ~ 33356691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571667.2
ACTCATCCCACAATGCTACACAGCCGTGGAGTTCGAACCACTTTCTGCACCTACCCGCTGAGCAAGTATTTTGATTGGTGTGGCTATCTCCGGGCGGTTATTGTTAGGAAGTAGCCTGTAGATTAGATTTTACTCACACATTCAACTCAATACCGCCGTAGGAATGTGATGGATTAGAAAAATATGTGCCTTGGTTGTCAACATGTTCCCCGGCGTTTTCTATGCGCTCCTGGCGGGGTTTCTCGGGGCTGTCGCATCTTCATCTGCAAAGCTGTCACTTGGAGCCGATTACCTTAAAGGTGTATGTGAAACGGGGCTACGAACATGGGGAGAGCAGCGGAAATTTAGACAACCGGATGAAACTACCGCGTGTGACTGGcTACACATCCCCCTGAGGCTGCTTTGTGGGGGGCTGCTCTTCACTTGTAATGCTGTGATGTGGACATTCCTCGCTAAGGCTCTCAGgtactcttcctcctccacccgaACCACTGTGACCACCACCGCTTCCAACTTCATATCTTCCgcctttttggggcAGCTTATCTTCGGGGAGGCCCAGATTGCATTGTGGTGGGTGGGAATCTCCCTCACGTTCTCTGGCCTCCTGGTACTTCAGAGGGCAGCCCCCAACGACCGAGCCAGGAAGGATGAATGACAACCTGTCGGAAGGCACAACTAATTAACTGATATAGAAAGAAACCAGTAATGCAACGTATAGCCTACTATCTGTGACAAACAATAGCATTTCTTGGGTGAATGGCAACTTTGGAAGGTAAAGCACTGTCAAAACATACCATGTAAGGAATATATagtgatttttgttttgttttaaacaCTTTGACATCATCAGCAATGTGTGCATGACATCAATACTTGAGAACACAAAAGCTGTTTTGCTCACATATCCTAAGATGACACTCACTGTAAACTTCCACACCAACATTGCATTATTGCATGTTCAAGGTGATGTGTGAATGGAatcatgtatatagcctcatatCTTGAGGACTTGACCCTTAGAGTTTTGACATGTTTTGTGAATTCTGAGGAGGTTTGGCCTTGCCTGCCTTTATAGCAAATGTCTAATAGAAAGTTCCTCACAAGGTCTAAACCCAATTAAGTCAAACCAAAGTACCCAAATATGTTGATCCTGCCTTTTACCCACTAACCACAGCAGTGGCTCTGTCAATGCATTGTGAAGTCAAACTGCTAAGTGGCCCAAAATAAATCGTAGTGACCTCAACTGCCTGTAAAGTGATACTGTCTAGTTCACTCAAAAATCTAAGTTTGTCAGACATATTCAAACCTCAAAAGTGGCCTAATGTCGAGATGAGACAAACTCCAATGAATGGAAAGGATAGGCACAGTCTAATTTCATCTTCTTTAGAGGGTGCCTGTCTTTCCAATTCATTTGGAGATGAGGCACAGAGCTGGATCTACACAGCAGACAGTCTGGACCTCTTGACATTAGCCCACATCTGACCTCAACTAAAATTTTGGAGTGAACTATCCCTTATTTCCTTTGGCAGAAGAGACTCATTTAATGCTGACCTAATGGGGTGTCTAAACAACAGTTACTCCAATGTCTGGCCTTTTAATTGAGTGTCACCAGCTGTTTGTCTTCCAGCTGTAGGCCTGTCTCATCAACAATGTCTATCCTAGTTTTCCAATGCAATTAAAATCAGTTTGAGGTTATCCTTGGGGTAAGAGAGGCATCCGGTAGCACAGTCCCTCCCTCTGCATCTTCCAAGACTCCCAAAAGGTCAAATGTTGCTGTGGGGTTTCTAACCCAACTACTGAAAGTAGTGTTTATTACTAGCATGCTTGTCCTCCAACGGTGTACTTCCCTGATATTCCTTAACACTGTGATGTGCTATTGTGGAAATGGGCTTTTTGCGTAATACTGACAACGTTACCATAGACTGGAGTTTGACTTGACAACTTTACTATACGATCACactttgctgttttttttttatacgtATCATATGCATGCAACAACCAACGGTAGCTACCTGTATTCTGACTGTATCTATTAGACAATGATATGTCTGTATAAATGCAGAGGAATGCACACTATGAAATCGGTTCTCCATCCAGTTGCAGTACATTACAGACTGCAGgttttgtatgtaatgtaatCTACTCCCCTTGCAATGTGACTATCTATGCTATTGAATCAGGATGGGAGACATTGGTGCTGACATTTCTCCTGTGTTCTTCAGTCTAAACTGAGGATAAACATTTACCTGTGAAGCCACTGTTACTAAGGGCAAGAGAAATCAATGCATTAGTGCAGTGGTTTCATGAAATGTTTGATTTATAGCCAGCACCTGACTGGGACATGTTTGTTGTaaccattatactgtagatatggaTATCATGTTATAAACTGTAGATATTAGTTTGGGAGGTGCATATGACTGACCTGTTAAGATGTGTGCTCCAGATTAGTGCAGCACTGGGGCCCTACTAGGGGGATAAGGAAAGGCAATGTATTATAAACAAAAATGCATTATTAAAAGAGTCCTTACTTGGACAAGACACCTCCCCA
>TU1762277
TTCGAACCACTTTCTGCACCTACCCGCTGAGCAAGTATTTTGATTGGTGTGGCTATCTCCGGGCGGTTATTGTTAGGAAGTAGCCTGTAGATTAGATTTTACTCACACATTCAACTCAATACCGCCGTAGGAATGTGATGGATTAGAAAAATATGTGCCTTGGTTGTCAACATGTTCCCCGGCGTTTTCTATGCGCTCCTGGCGGGGTTTCTCGGGGCTGTCGCATCTTCATCTGCAAAGCTGTCACTTGGAGCCGATTACCTTAAAGGTGTATGTGAAACGGGGCTACGAACATGGGGAGAGCAGCGGAAATTTAGACAACCGGATGAAACTACCGCGTGTGACTGGGTGAGGAATCGCCCCCGTTTAAGTGCCTGAATTATTAACGCGATGGGATTCGGGTGGCTTTGAATAATGTAAATGTCAATGTGTTAGCATAGCAATACGTCCGCGAGAAGGGAAATTGGGGTTTTCCAGTGATGAGTTTAAGGCTCCGGATTCCAGCTCGTGCGCTCAGCATCAGCACCAGCACCATCGGCAGCATCATCGGAGGTTCGCTCAGCTGGACAGGCGATGCTGTGTATCAAGCTTCTGTCGTACCCGCGTGCTTGAACGACATTGCAGCTCGTGCGACCTACAGTAGTGCAGTATTACATCGTTTATTTTTGTGTTAAAGCAAGATATTTGCTTATGTTGAGTATCATTTTATTCTAGTGGCCGAATGTGATCCTAGTTTAACATATGGGCAATTGTCCATTCAATGTCAATACCAAATTGTAATTGGGCTGCTTGAAACGACCTTCATAATGTGGTGTTATGATTTTACGTTTGAGTTATCatctatattatttatttataaagccgtCAGATATTTATTTTACATACATTTACATATCAAGACACATAACTAAAATAGGCTCCAAATCCCTGAAATGGAGCTCAACTATTTGATGTGACTCAATTGCCACATAACATTGTTTTCATTCATATAGACCACATTCCAGTACACGACACACTGACGTCACGCACAAATGCGTGCTACTATTGGCAGCAGTAAAAAGCCATCACCATCTATGCCCGTTCAACATAGCCTAGATTTACGTTTTTATTACTTATAAACAACGTCACTTTTTGGGGTTCTCCTATGCTTACAATGATGTTTAGACTCTTGCTTGAATGGTCACAAAGATTATATTTGGTTATCTTtgcaaaataactattttggatTCAGCCGTTGTTAGCTAGAATTCTAAGGCTCATTGAAATAgactgttttaaaaaaaagtacaatgcagttgatttgcgatgatgacacaaacattatattaagcaggacataCATACTAGCCTTAAAATATgattataatccaaaagtagtgCGCAATGCACTTATAAGCAACATGTAAATAGAGGCTTTTTTTTACCCTTGTTCCCCCTTGTTCTCCCACCAACTTGTGCACGTCGTGGAGCAATGTTTGCAAACACCGAAAGGTAtctattgtgtttgtgtgtttgtttcagcTACACATCCCCCTGAGGCTGCTTTGTGGGGGGCTGCTCTTCACTTGTAATGCTGTGATGTGGACATTCCTCGCTAAGGCTCTCAGgtactcttcctcctccacccgaACCACTGTGACCACCACCGCTTCCAACTTCATATCTTCCgcctttttggggcAGCTTATCTTCGGGGAGGCCCAGATTGCATTGTGGTGGGTGGGAATCTCCCTCACGTTCTCTGGCCTCCTGGTACTTCAGAGGGCAGCCCCCAACGACCGAGCCAGGAAGGATGAATGACAACCTGTCGGAAGGCACAACTAATTAACTGATATAGAAAGAAACCAGTAATGCAACGTATAGCCTACTATCTGTGACAAACAATAGCATTTCTTGGGTGAATGGCAACTTTGGAAGGTAAAGCACTGTCAAAACATACCATGTAAGGAATATATagtgatttttgttttgttttaaacaCTTTGACATCATCAGCAATGTGTGCATGACATCAATACTTGAGAACACAAAAGCTGTTTTGCTCACATATCCTAAGATGACACTCACTGTAAACTTCCACACCAACATTGCATTATTGCATGTTCAAGGTGATGTGTGAATGGAatcatgtatatagcctcatatCTTGAGGACTTGACCCTTAGAGTTTTGACATGTTTTGTGAATTCTGAGGAGGTTTGGCCTTGCCTGCCTTTATAGCAAATGTCTAATAGAAAGTTCCTCACAAGGTCTAAACCCAATTAAGTCAAACCAAAGTACCCAAATATGTTGATCCTGCCTTTTACCCACTAACCACAGCAGTGGCTCTGTCAATGCATTGTGAAGTCAAACTGCTAAGTGGCCCAAAATAAATCGTAGTGACCTCAACTGCCTGTAAAGTGATACTGTCTAGTTCACTCAAAAATCTAAGTTTGTCAGACATATTCAAACCTCAAAAGTGGCCTAATGTCGAGATGAGACAAACTCCAATGAATGGAAAGGATAGGCACAGTCTAATTTCATCTTCTTTAGAGGGTGCCTGTCTTTCCAATTCATTTGGAGATGAGGCACAGAGCTGGATCTACACAGCAGACAGTCTGGACCTCTTGACATTAGCCCACATCTGACCTCAACTAAAATTTTGGAGTGAACTATCCCTTATTTCCTTTGGCAGAAGAGACTCATTTAATGCTGACCTAATGGGGTGTCTAAACAACAGTTACTCCAATGTCTGGCCTTTTAATTGAGTGTCACCAGCTGTTTGTCTTCCAGCTGTAGGCCTGTCTCATCAACAATGTCTATCCTAGTTTTCCAATGCAATTAAAATCAGTTTGAGGTTATCCTTGGGGTAAGAGAGGCATCCGGTAGCACAGTCCCTCCCTCTGCATCTTCCAAGACTCCCAAAAGGTCAAATGTTGCTGTGGGGTTTCTAACCCAACTACTGAAAGTAGTGTTTATTACTAGCATGCTTGTCCTCCAACGGTGTACTTCCCTGATATTCCTTAACACTGTGATGTGCTATTGTGGAAATGGGCTTTTTGCGTAATACTGACAACGTTACCATAGACTGGAGTTTGACTTGACAACTTTACTATACGATCACactttgctgttttttttttatacgtATCATATGCATGCAACAACCAACGGTAGCTACCTGTATTCTGACTGTATCTATTAGACAATGATATGTCTGTATAAATGCAGAGGAATGCACACTATGAAATCGGTTCTCCATCCAGTTGCAGTACATTACAGACTGCAGgttttgtatgtaatgtaatCTACTCCCCTTGCAATGTGACTATCTATGCTATTGAATCAGGATGGGAGACATTGGTGCTGACATTTCTCCTGTGTTCTTCAGTCTAAACTGAGGATAAACATTTACCTGTGAAGCCACTGTTACTAAGGGCAAGAGAAATCAATGCATTAGTGCAGTGGTTTCATGAAATGTTTGATTTATAGCCAGCACCTGACTGGGACATGTTTGTTGTaaccattatactgtagatatggaTATCATGTTATAAACTGTAGATATTAGTTTGGGAGGTGCATATGACTGACCTGTTAAGATGTGTGCTCCAGATTAGTGCAGCACTGGGGCCCTACTAGGGGGATAA

Function

symbol description
tmem42 Predicted to be integral component of membrane.

NR:

description
transmembrane protein 42

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571667.2 False 2557 mRNA 0.43 3 33352795 33356691
TU1762277 True 3629 lncRNA 0.42 2 33352826 33356621

Neighbor

gene id symbol gene type direction distance location
LOC110496034 LOC106588202 coding upstream 180681 33086601 ~ 33172114 (+)
LOC110496033 LOC106588201 coding upstream 302414 32994534 ~ 33050381 (+)
LOC110496032 LOC106588200 coding upstream 393737 32720349 ~ 32964969 (+)
LOC118941135 NA coding upstream 693236 32573956 ~ 32659643 (+)
LOC110496028 NA coding upstream 990919 32352055 ~ 32361876 (+)
exosc7 exosc7 coding downstream 23899 33380590 ~ 33389754 (+)
nrm nrm coding downstream 64143 33420834 ~ 33426552 (+)
LOC110496040 LOC106588209 coding downstream 76675 33433366 ~ 33450101 (+)
LOC110496797 LOC106570068 coding downstream 100231 33455560 ~ 33458964 (+)
LOC110496041 LOC106588210 coding downstream 123405 33480096 ~ 33489024 (+)
G1539677 NA non-coding upstream 282648 33069927 ~ 33070147 (+)
G1539674 NA non-coding upstream 285784 33066781 ~ 33067011 (+)
G1539669 NA non-coding upstream 297948 33054426 ~ 33054847 (+)
G1539625 NA non-coding upstream 300862 33050434 ~ 33051933 (+)
G1539651 NA non-coding upstream 324119 33028385 ~ 33028676 (+)
G1539886 NA non-coding downstream 34307 33390998 ~ 33391220 (+)
G1539887 NA non-coding downstream 34894 33391585 ~ 33391843 (+)
G1539890 cdcp1 non-coding downstream 38263 33394954 ~ 33398266 (+)
G1540519 NA non-coding downstream 104541 33461232 ~ 33461432 (+)
G1539671 LOC106582599 other upstream 292938 33058990 ~ 33059857 (+)
G1539641 NA other upstream 332251 33020228 ~ 33020544 (+)
G1538208 LOC106588182 other upstream 1598604 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 1772475 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 1780556 31568375 ~ 31572239 (+)
G1540551 NA other downstream 132646 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 178585 33535229 ~ 33537569 (+)
G1540996 NA other downstream 722027 34078718 ~ 34079074 (+)
LOC110496058 LOC106588349 other downstream 771650 34127192 ~ 34133734 (+)

Expression


Co-expression Network