exosc7 (exosc7)


Basic Information

Item Value
gene id exosc7
gene name exosc7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33380590 ~ 33389754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571673.2
CACTGAGGTACAATAAGAAGCTGAGTTTTATCTGTGCCTTTTTGCCGCTCTTTGATGACGTAAACAGCGGAAGAACACATGTGGTATTTTAGTGCAACGCATCATGGCTACTGTACAAGTCAGTGAGGCTGAAAAGGTGTATATTTTGCATGGTGTACGGGATGACTTACGGGTTGATGGACGAGGATGCGAGGACTACAGACACATGGAGATTGAGACAGACATGGTGTCAAATACAGATGGCTCAGCCAAAGTTACACTGGGGCATACAGACGTGCTAGTGGGAGTCAAAGCTGAAATGGGAAAGCCAAGGCCCATGGTCCCAGATGAAGGCTACCTGGAGTTTTTTGTTGATTGCTCTGCCAATGCCACACCAGAATTTGAGGGTCGGGGTGGTGATGAGCTGGGCATGGAGTTGAGCAACACCCTGTACAAAGTGTTCAACAACAGATACAGTGTGGACCTGAAAAGCCTCTGCATCAGCCCAGGGGAACACTGCTGGGTGCTCTATGTGGACGTGCTGCTCCTGCAGTGTGATGGAAATCTTTTTGATGCCATCTCTGTTGCAATTAAAGCAGCTCTCTTCAATACAAAAATTCCCAAAGTGCACATCTCTGAGgatgaggaaggagggaaggaaataGAGCTGTCAGACGACCCCTATGACTGCATGCGACTCAATGTGGAGAACGTTCCCTGCATCGTGACCTTGTGCAAGGTGGGCCATAGGCACGTGGTGGACGCCACGCTGCAGGAGAAGGCGTGTTCAGTGGCCAGCCTGATCATCTCTGTCACACACAAGGGGACGGTCACCTGTGTCAGGAAGGTGGGGGGGGGAAGCCTGGACCCAGAGAGCATCTTTGAGATGACAGAGACAGGGAAACGGGTAGGGAAAGCCCTCCACGCCCCCCTCATGGCGCTTCTGCAGGAGGAGGAGAGTCTGGGAAAGAAGAGACAGAAAGTGGGCTTTCTTGGTTAGCATCACTGTTTTTGTAAATGTTTACTATTCTAATAAAGCATTTTATTTGTACAGTC

Function

symbol description
exosc7 Predicted to be involved in RNA metabolic process. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Orthologous to human EXOSC7 (exosome component 7).

NR:

description
exosome complex component RRP42

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004527 exonuclease activity molecular_function

KEGG:

id description
K12589 RRP42, EXOSC7; exosome complex component RRP42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571673.2 True 1035 mRNA 0.50 8 33380590 33389754

Neighbor

gene id symbol gene type direction distance location
LOC110496035 tmem42 coding upstream 23899 33352795 ~ 33356691 (+)
LOC110496034 LOC106588202 coding upstream 208476 33086601 ~ 33172114 (+)
LOC110496033 LOC106588201 coding upstream 330209 32994534 ~ 33050381 (+)
LOC110496032 LOC106588200 coding upstream 421532 32720349 ~ 32964969 (+)
LOC118941135 NA coding upstream 721031 32573956 ~ 32659643 (+)
nrm nrm coding downstream 31080 33420834 ~ 33426552 (+)
LOC110496040 LOC106588209 coding downstream 43612 33433366 ~ 33450101 (+)
LOC110496797 LOC106570068 coding downstream 67168 33455560 ~ 33458964 (+)
LOC110496041 LOC106588210 coding downstream 90342 33480096 ~ 33489024 (+)
LOC100136630 LOC106570065 coding downstream 119082 33508836 ~ 33512426 (+)
G1539677 NA non-coding upstream 310443 33069927 ~ 33070147 (+)
G1539674 NA non-coding upstream 313579 33066781 ~ 33067011 (+)
G1539669 NA non-coding upstream 325743 33054426 ~ 33054847 (+)
G1539625 NA non-coding upstream 328657 33050434 ~ 33051933 (+)
G1539886 NA non-coding downstream 1244 33390998 ~ 33391220 (+)
G1539887 NA non-coding downstream 1831 33391585 ~ 33391843 (+)
G1539890 cdcp1 non-coding downstream 5200 33394954 ~ 33398266 (+)
G1540519 NA non-coding downstream 71478 33461232 ~ 33461432 (+)
G1539671 LOC106582599 other upstream 320733 33058990 ~ 33059857 (+)
G1539641 NA other upstream 360046 33020228 ~ 33020544 (+)
G1538208 LOC106588182 other upstream 1626399 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 1800270 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 1808351 31568375 ~ 31572239 (+)
G1540551 NA other downstream 99583 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 145522 33535229 ~ 33537569 (+)
G1540996 NA other downstream 688964 34078718 ~ 34079074 (+)
LOC110496058 LOC106588349 other downstream 738587 34127192 ~ 34133734 (+)

Expression


Co-expression Network