cdcp1b (cdcp1)


Basic Information

Item Value
gene id cdcp1b
gene name cdcp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33392413 ~ 33414958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571674.2
TGAGTGGCCCGGATTTTCGTATACTATGTTACGTTTTGTCCAAGAGACCAGCCTGTCAACGGCTAAAATTCTTCCGTCAAGTTTCGACAGACCAATTTACGTTAGCCTACACGTCGCCCTGAGTGAAACAGGGGACATGCGGCTCACTACAATTTGCGCTGGAGTACTCCTGGGaattgtgattttgttacgcctcgACCTGTCAGAATGTCTGCACATGAATGTCCACCCTGACAAAGATGCCGCTGTGACTGTGTCGTCCTCACTGTTCCTTCCATTGGAACAGTGTTCCGTGTGCACAGTCCGTGGCGGTGAGAATGACACCCAGACGGCCTGTCACTCATCTCTGGCCCTGGTCCCAGATGAGAACATCACCTTGCTCTTCAACTGTACTGAACTGCCACAGAGGGCCTTTGCCATCCAGATCCACAGGAAAATCGATTGCACCAAGGACTCTTGCAGCCCTGCCACAGGTGCAGCTCAGCCTTCCCTCTTCCCAGAGTTCATTAGAACCCTTGTCTGGCACCTAAATGTGCCAGagatgaccgttttgagtttgGACTTCCCTAGTGACAGGCTGAAGGAGATGACTGAAGCAGAGATCTGTCAAGATGGCTACCAGTACGCTGTAACCAGGACCAGCACTGAAGGAGAGGTCAAAACTCAGACATACTGCAGGAATGGCCTTGTGGCTCACTTAGATATACTGAGCAACGCCACGGTGTCTTTGCAAGTTCAGAACGGCGGGGAGGTGAATTCCTCTATATTCACGGCCACTGCCAAACCAATGAAGAAACAGAGCCGAATGATGTCAGTGACCCCAGAGCCAGACACTATCGTCACCATCAGCAGAGACACCAAAGccaaagagtgcagtgtgtgtgttggggaggggCCTACCTGTAACTCCAAAGAACTCGTCCTGAAAGACGCCCACAACATCTCTGTGACGTTCACCTGCCCACAGCCACAAAATCTCTTCAGTGTGCAGATCAACAGGGATATTGATTGCACAGAGATCGCCTGCAGCGGGAACATTGTCCAGGCGGAGTCCTCCCTCTTCCCAGACTTCAACAGAACCTTCACCTGGGACCTGAAAGTTCCACCTGGCCTTTCCTTCCAGCTGGACTTCCCATCACCGGGAATGAGACAGATCCCACCCTCTGAGTCCTGTCCTGACGAGCATACCTACACCATCATCACTTACCAGCGCACCGGGCCCGCCACCATCGGCATGTTCTGCCCAGATGGCACCATCACCACGGTCCAGGTGCTGTACAAGGGCCGAGTGTCCCTGCAGGTCCCTGGGGACAGGAAGCTGGAGCCGCTGGACTTCAAGGTCACTGTTGGGCCGGAGATTAAAATGCTGGCTGTGGTAAAAGTCAACCTACCTCGTGGGGTGTCCGATACAAACTTTCTCTCAGCCAACTACCCTAGAGGTTTCTCTGACAATGACCTGATGAGGTGGGACTTCATGGTGCCCGGCATGCATAACTACACAGTTAACTTCCTGAATTACACGGCGCCTCTCTGCCGGAAGAAGAAAGTGATGGTGATTTATgacaaggagggagaggtgggcatCCAGAAGACCCTGGTGGACCCCCAGCCAACACACAGGCAGGGCAGCTTCACCATGACTATGTTTAACTGTGAGACTGACAAGACCAAACAGGGCCTGTCCCTACATTTCAGGCTCTCGGTAATGAGGAGCGGCCATCCAGTTCTCTGCACTGTAAAtctgtcagaggaggaagggccATTCCTCCACATTGAGAAGATGGGCTCTGACTCCCACTGTGAGATGAGGAAGGACTCTGTGGTCCAGGAGAAGATCACAGTTCCCTCAGGGACCAAAGCAAGTCTTTCTTTCCTGGACTGTCCAAGTGAAGACCTACGTCTGACAGCCACGAAAACCATAGGATGCCAGAGTTTGGACTCATGCTCTGTGAGCGGGACTCTTCTCACGGTCCCCAAAATTCCGATGTGCCTCCCTACGCTACTACAAAGCTTCACCTGGCACCTCAACATCCCAGTATATGGCACTGTGGATCTACTGTCCCCCACAGGAAACCTCAGGCAGTCCCTGCCAGGACAGGAATGCAATGGGAGTGTCTCCCTTCACATAGCTGAGGGTGATGGGTCCTCCATTGGCTACTTCTGCTCCGAAGGCATCATTCGCAAAGTCCAAGTGCACTCCAACGTCTCTGTCACTGCCACAGCCAAGGACCTTAGCCTGAATCAAGGGCCTTTCCTCAATGTGTCCTTCAGTGATGAAATCTCAGAGAGCATCATATATACTGTCCAGCCCAGAATGGGTTCCCCTGCCCTCCTGGCCACCCCAAACTGGCCCAACGGTATGAAGCCGTACTCCACCGTGTCCTGGATCGTCAATCTGCCAGGCCACCTCCAGGCCAACCTGCTGTTCACTAACATCAGCCAGCCCAAGTGTGGCCAGGGGCACACGTGCATCAAGGTGCAGACCCTGGACTCTCCAGAGGAGCTATTGAGTCAAAGGGAGGATGAGGCGGCAGAGGACAAGCTGATGGTCCCTGAGAGCTTCTACCTCAACATGTCCAACTGTTTGCCGGAGGACAGACACTTCAGTGTGCTCAGCAAGGTCACCCTACAGAATACTAGCATGCTGCTCCAGAGCTCCATTCTGTGGGCTGTGGGAGCAGTGCTGCTCCTTATGCTCCTTGTGCTGACAGTCGTCTGCTTGGTGATAAGGAAGAAGAAAAGAACGATGGTCAATGAGGCTTCCATCTTCGTAAGGAAAGGGAATATCTTCATCCCAGGCGACGGCATGTTCCCCAAAACCCGGTCGGACAATGAGTCTCATGTCTACGCCTCCATCGAAGACACCATGGTGTATGGCCACCTGCTCCGCGAGCCCAGCTATGTGGGCACCATCCAGGCCCACTTCCAAGGACAGCCGGTCGACACCTACCGGACATTCATGCCGCTCCAGGACGGAGTGCCAGAGATCACAGAGACTGCTGCAGACCACGAGCCTGAACTGGTGCCTGAGAAAGACATGCACAGACCTTTCCTGGACCCGTCAGAATCCTTCATGCCATCAAGACCTCGCACGCCCATAAACCGTCACAACAGCATGGGCTTCATGGACCGCAGGATGGTGGACAATGAGCTGTGCACGTTCAAGAGCACTGGGGATATAAATACGATTCGACTGTCGGGTGCAGACCAAATCCTAGAACCGGAGATCTTCATCGGCTCGGATGGGGAGGAATCCATTTAGCATACTGTGAGATGGACTACTGTTAATTATTTCACATTGTTGCAAGTTCACTGCAGTGTAGAAATGGAGCGGAAATGTGCCTTTGCATAACAATCAGGGCGTCTGTATTAGTGGTGTGTTGTCTACTGCATAGGACCATCAGACAACACTGGTACTACATTTCATTCGAGCCTCTGAGTCTACGCTTCCTTACAGCACATGGTGCTGCTCTTCTGATTTTACAATACTGGTGGACTTGGTTTTTGTGTATATTTCTTGATTgtattttatctttgttttatATGCTAGTATGTACTTAATAGAATGAATGTTGCCCTGGGCCACTGGTGTGCCATGGATTTAGAAGCAGGGTTGCATCTAATGAGTAACCTTGAGTTACTTTTAGCTTTTTTGCATTGTTGATGTTGTTTGCCAAAGGTTTTTCTCTGTAAATGTATTTTTAGACATTACCAAACTTTTTCTctgccaattattttaattcattaattagaCATTTTGAGTGGTCTGTGAAAGTGTACAGTGTGATATTGTGAGtaatacagttttttttttaggatAGACAAGGTAATCAATCCAAAACACTAAAACTTACAAAGAAAAGACAAGGCTTCCTTGTTGTTATGGGGAAAAGTGACATTATTAATCCTTTGGCTAAAACCTGTGACCTTTTTAAATCCCATTTTGTAGCTTGTTATAACCTTGAACCACGGAAGACCGATTGTTTGGAAGGTTGGAGTGGTTACCATTGAGTATTTGTTGAGGGACTTTTACAGGAAACAACCAAACCTTTAGCCAGAAGCCAAGGGTCATCAGATTGTGGCAATAAACTTTGGTTTAAATCTTGTCTTCAGTACGAAAATATTATaatcacttttttttaaatatacactgctcaaaaaaaataaagggaaca

Function

symbol description
cdcp1 Predicted to be located in extracellular region and plasma membrane. Predicted to be integral component of membrane.

NR:

description
CUB domain-containing protein 1-like

GO: NA

KEGG:

id description
K06732 CDCP1, CD318; CUB domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571674.2 True 4175 mRNA 0.50 12 33392413 33414958

Neighbor

gene id symbol gene type direction distance location
LOC110496036 LOC106588206 coding downstream 12905 33366687 ~ 33379508 (-)
LOC110496796 osbpl10 coding downstream 83082 33172426 ~ 33309331 (-)
eomesa eomesa coding downstream 938030 32450001 ~ 32454383 (-)
LOC110496030 LOC106588196 coding downstream 974590 32365592 ~ 32417823 (-)
LOC118941133 NA coding downstream 1044732 32336621 ~ 32347681 (-)
LOC110496042 ddah2 coding upstream 111183 33526141 ~ 33533687 (-)
LOC110496044 LOC106588213 coding upstream 145884 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding upstream 157056 33572014 ~ 33573707 (-)
LOC110496046 lynx1 coding upstream 164838 33579796 ~ 33581971 (-)
LOC110496048 LOC106588215 coding upstream 191991 33602474 ~ 33610948 (-)
G1540475 NA non-coding downstream 111 33391901 ~ 33392302 (-)
G1540472 NA non-coding downstream 1177 33390989 ~ 33391236 (-)
G1540466 exosc7 non-coding downstream 6824 33380665 ~ 33385589 (-)
G1540456 tmem42 non-coding downstream 35751 33352824 ~ 33356662 (-)
G1540320 NA non-coding downstream 220320 33170529 ~ 33172093 (-)
G1540499 LOC106588209 non-coding upstream 18846 33433804 ~ 33434235 (-)
G1540500 LOC106588209 non-coding upstream 19832 33434790 ~ 33435085 (-)
G1540501 LOC106588209 non-coding upstream 20349 33435307 ~ 33435725 (-)
G1540521 NA non-coding upstream 47147 33462105 ~ 33462320 (-)
G1540531 NA non-coding upstream 53676 33468634 ~ 33468949 (-)
G1540473 LOC106581475 other downstream 661 33391339 ~ 33391752 (-)
G1540148 NA other downstream 455844 32899578 ~ 32936569 (-)
G1539348 NA other downstream 830293 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1333628 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1677232 31714506 ~ 31715181 (-)
LOC110496049 LOC106588217 other upstream 242683 33657641 ~ 33674304 (-)
G1541318 NA other upstream 746969 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1320416 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1722679 35137637 ~ 35138554 (-)

Expression


Co-expression Network