LOC110496040 (LOC106588209)


Basic Information

Item Value
gene id LOC110496040
gene name LOC106588209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33433366 ~ 33450101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571677.2
CAAAAGCAAGACCTCTTCTCTGTTATGTCTGTCTCCTCTTTACCGGAATGGAAACAACTCCTGCTAGAgcgaaagaggagggaggaggaggagcgagagaagagagaaaaagaggaggaggacaaaCTCGCCAGCATGCCTGCCTGGAAGCGAGGGATCATCCAGAGGAGGAGAATGAAACAGGAGAGTTTCGGGGACAAGGAGAGGGAGGGCCCCCTCCAAGTCAAGGAGGGCAGGTCCCCCTCTGATCCTGCGAGTGACctggacagctctacactagtgcAGCTGGGAAGTGAACCACCACTCAGCCCAGACATCACGGGGCCTTGGCTGGATGAAGAGGCTAAACCGCAGTGTCTGGTGTTAAAGGAGACCATCATCCCTGTCGGACAAAACTCATTCATTCGCACACATGGCggatggaggaggggaagagaagcaGAGAGGGCTGGGGAGATGGGCCACGAGAAAGGGAATGAGCAGGAAAtagaagtagggagagagaggcaaaaggagaaagaaagaggccaCGTCAAAGGTCATGATGGAGAGTCTGGGAAGGGAAGAGATATAGAAATACAAATAGAGCGATACAGGGACAGGAGTGGgggcagagaaagggacaggagtGCCGGGAGAGAGACGAGCCGGGATACtgtgagagacagggaaagggatTGCccgagagggagaaaagaggaggagagggaggagggagactcaaATTCTCCAACCCCCAAGTACTCCTATCCACTAGTCCCAGGCCTTCGTACTATCAGAGCAGACAACATCATCATTATTGAACAGGACAGAAAGGGAAGTGATGAaaggaggggtagaaggagagagtcagagagggagagggaggtgatggAAGAGGAGCAGGAAAATAGAGACGTAAAGATGGACCTCAAGGAGTTTCTGGCTGGTGGAGGGAGTGTCACAGAGATCCGAGCATCAGAAATATTGATCATTAAACCCTTAGCTGGCACTGAGGACTCAAGAAGTGGAGGTCTCAAAGGGACAGGcagggaaggagatggagaaagagggagagatgcaaAGTGCaataaagatggagggaaagactgtgagaggcagctggagagagaggtggcatGGCTGATGAtgaaagataaagagagggaaAACTTGAGGGAGAAAGACCGACCACGGACACAAGTAGCTTCTTCAGAAAAAGAGGATAGGAGATATGGTGACACAGATGACAGTATCCACAACGAGAGAGGAGTTAGGGTGAGTGAGCTGCTGAGTAAATTTGGGGAGCACACAAAGAAATTCAGAGAATATCCAAAACCCCCATCCCGGTCTAAAAGCTCAGAGTGTTTCATCCGGCCTGGCAGGGGCAGAGAACCGTTTTGTCTGGATgatggagacaggagaggggaggaggaacaTGCAGGATTCAGGGGTGTGCCCAAGCGGTCATTCAGCTTCTCTGACCGTGGGATATGCACAAAGGAGAATGGCATGCAGGACGAGGGGAACCATGATAGGAAGGTGGTGGAGAGGACATGTTCAGACAGGAGGGTGGCAGCAAAGGGAGATGTAGTGGAGGGGGAATGGTCAGAGAGGGCAGGCAAGCAGGAGTGCTGGACCTGGCTTTCAGATAAAGTGCCTGTGGGGAAGCATAGAGAGGGATGCATAAAAGCAGACAGGGCGGTAGGGGGACAGCACGAGAGACGGCCTGCTGTGGAAAGTAACGCCGGAAAAGAGATTGACCGTTGGGTCGAGAGAGTAACAGGAGTGGAGTTAGATTTGAGCAACAAGGGGACAGAGGAACTCACAGAGAATATGTATGGGGAGGTAGGGTTTACAATGGCCTCACTTAGAAACACCGAGGCCTCGTTTGCGCGAAGAGTGTCCATCAGACAGGATGGTCGAGAGAGAGCAGTGGAAAGAGAGGTGGAGCAAACGAgagaagaaagtgagagagggttGGACAAGGCGAGGagcaaagggagagagggggtgggtggaAGAGAGGCAGAACCTCAAGTGCGGGAGAGAAGGGAGTCAGACTTTAGGCGAGGATCAGAGGTAAGGGACATGAAGAGGGTATCAGAGGTAAGGGACATGAAGAGGGTATCAGAGGTAAGGGACTGCACAATTTCAGTTGAAACAACTCAGCAAAACTGTGTGATCACCCTCTCCATAGACAGAGCCAGTCCTCCTCAGTCTGTCGATAGTCATTACAACCACGTGTCAGCGTTTACAGAGTGCTCATCAAACTTGCTCAGTACTGTGGCACATAAAGGAACAGATTGGCATAGTAGTCAAGGAGCACCGGGACACCATTCAACCCAGTCACCACTGTCACAGCACACAGAGGATCTTATCAACAagatagagagagtgggggggacaGTGAATGAACGTGACAATCACAAAGGGACCCAAACATTGATGCTGGATGGCAAAGGCGTGGTGAGGGAggacacagagactgagagagggagcAAAGCTTATAGGGAGCCAGGTGAGGTAAGCAAGGACACTATACTTTCACCTGGCGCACACGTGCACAGTCATGTTTACCCCAAAAAGTCAGTTCTTGAAGTGACCCCTAAGTGTCCTAAGTCTCCAAAGTGCTTTGCCTCAGTTGGAATCCCTCCAATGCCACTTGAGATACACATACCCAGGACCGTGTTCTATGGTGTGGGGGAGGCAAGCCTCCAAAGCGAATACGACCGGAGCTgcgaaggagagggaggaaaaggtgTGGAGAGGAAGGACAGTTGCAGGATCGGCAAGCCCTTGTCTCACATCGAATCCTTGCGAGAGAAAAgccaacagagagagaaggagaggctgAGGAACATGGAGGGAGTGGCAACGACGGGGGATGATGGAGATGCGACTGAGGGGACAGAAAAGGCTGGGACTAGAAGGACTAGAAAAGCTTCATGTTCAGACTGGtgtgaggaaggagagatggggaacgaaatagagcgagagagacagagacaggaaggcTCCCCACCGCAGACAACATCCACTCAGTTTGACGTCACACAGGAAGTGAGCGTGTCGAAAGCCGTCTCCCagcttcctgttcctctctcgtTCTCGCAAGCTGtcaaaggagagaaagaaaccaGAGGGATCTCCATTGCAGCCTGTGAAGTAGCCTTGTTCAGCTCTCACACGACTGAGAGAGGGGAAGATCCAACCAAACATGTACTAGCAGAGTTACGGTGCGACAGGGGTCGGCAGAGGAAACAGAACACCGGAggcagaggagaagaaggagaggataAACTCTCAGAGGAAGAGTACAGGCTGCATTATCTGCCTCCTTCACACTCTCCCGCGCCCTtagactctctctccccctctctgcttcaccctccctctcttgctGAAATGAGCCGGATCTATAACTTGAAAACGGTGGGGTCCAGGGCGGCGGTGTGCATGAGTGACAGGACCGTGGATAGGCCTATCCCATCACACACTCCTAAGGTACAGTCCGACATATCCGCAGAACAACAGGAGCCATGCAGTCCAGAGAGATCAGTTGGGAGGCTGACACAGAAGCagctgtggggtggtggtggggctCCTGGGAATAAAGCCTCTTCCAGCGATGAGAAGTCCGGACTTCAGACTGTACAGCGGCAGGTGGAACAGCTTCAGTTGCGAGAACAACAGGAAGTACAGAGACTATCACATGACGACAACGCAGCACAGTCGTCTTTTGGACAAAATATTAATTTGAAAGATAAAGAGTCTAAAGCTCAGCAAAGCCCTAGGATATCACACAGCCAGCCTAATAAGGAACCTCAGCAGAAGCATCCGAGGCAAATGGACCAGCAAACAATCCTAAATCCCAGAAAATCTCAGTCCAATCTGCAACTGCACTCTGAAAGGCCTCCTCAACCCAAGCAGGCCCAGTCCAACCAACCCAAACAGGCCCGATCCATTACCATCAACTCCAGATCTGTCCTGACCCCCTCTCCTGAGAACTTATTACACCCAGACCAGGGAGTACCAACCACCCCATCAGCTTCTCCATCCCAATccacctccgtctctccctccccttccccttctcCGACCCATTTCACCATCAGAAGCCTCTCTGGAGGCCAGCAGGTCAAGAGGggcaccaccatcaccatcacccccAGGAAGCCTGTTGGAGGGGCAGCCGTGGAAGCTGTTTCTGTATCCTCTAGACCCCTGGCCAATACGTCTGCCCAGTCCCAGATGCCTGTCCTAaccgaggaaggagagagaggcaagaAGAGGTACCCCACTGCGGAGGAGATCGAAGTGATCGGCGGGTATCAGAACCTGGACAAGTCCTGCCTGGTCAAGACTTCCAAAGCATCTCCCAAAGGGGTGAAGGTGTGCTTCGACGAGACCCAGCTGGAGCAGGTGTGTGAGTACCCATCAGAGACCTCCATGTTTGACTCCACCCACTACCCCTTACTTGGTCaggtgaaagggagggaggaggaggtggaggaagacgaggaggagagaggagtgctTGTGTCCAGGAGCAGCAGGAATGTGGGGGCAGCGGTTGGCCTGAGAGTGCTGAGAGTGGATGAGTCTTGCCATCGGTAGACATCAGTCGGCTCGCCAAATTGCTCAAATGATGTGGTTAAGATTAGATTTTATCTTGCAATATGACTTTTGTTTTCCTGTATTTTGTTTCTTTGAAATTATTCATTTAATGTTTGTAATCTTTTTTGATGTacaatattttattttacatAGGATCAGGGACTATTGGTTTTGAATAAAAGAAAACAACAGTTTTATGTAGTTTGTGAGATGAatgtgtaacgatgtgcgctgagagtcgggaagcaaattcagggagtgagtgttttaataattAAACGCAACATAATACAAACCACAAACAACGCATAGACAAGGaactggaacagaaacaatgacacctggaaaaggaaccaaagggagtgacatatatagggaaggtaatcagggaagtgatggagtccaggtgtgtctgatgatgcgcaggtgcgcgtaacgatggtgacacgTGTGCCCCATAACGAGCACCTTGATGACCAAGAAGCTGGAGAGGTAGCACACGTGACAGAATGGTGGATGGAGCCTCAACTCCTCTATTTCAGTGTAAAAGTGTAAAGACAATATGAAAACATGGTACATATTGTAGCCTATAATCTTTACTATGTGCACTTGTTGTATTTTTACTATCAGGTGTGTACTTTTGGGTGATGATCACGTCTATGCAAGTTAGTGGATTACAAATGTATGGTAAAAAGGGTCCGGTCAGTTTAGTTTTAGTTAGCTTAGATCAACAACACAACAACGTCTCTACAGTATATAAACTCTGCATCAGCACTGTAACGATTCCCGGtgcattccaaatgacaccctattcccgacagggctctggacaaaagtactgcactataaagggattagAATGACATTTTGGACACATCCTCAATGATGCTTACCGTATATCATCTGGTCCCTGTGCCTGCTGGATTTGCTCATACCGATGACATAAAgaacaggtcatctacaagtccaagGTGAATTTTACACCCCTCATGTGTAGTTTCTGGTAAACCATGGCTATATGTAACGTCATGACAATTCTCTTTTGTTCAATTACTATTTCTGTTTGAACCACAACATGGATATCAGCTAGCCTTAATGCACATGATTTAAAACACTGATGATACATTATGGAATAATCACCAATACACATTAttataatctttttttttttaggtttcaCTGTTTGCCCATTAGTGGAATTAATGTGGTAGAATGAAAAAGAGtagtatatctactgtatctatgctAATTTGACTGCTTAGTTTTGAATGGAAAAGGTATTATGTTTGTGTCTCTGGTGTTATCATGTGAGACTACAGCACATGGGGGATGTGGGTGAAAACATGATTTAAGGGATGTTTACAACATTTAATCCATAGAATggtcctttggaggaaggattgGTGACATATATTTAGCATTTGTAtctaaaagcataattgagaaatgATTCATCAAAGTTGGCATATTTATGAAATGTTGATCTTACACAGGTCTCTTTTTTAAGACTCCATTATGtttatctgtaggtgctacaaagcAAACATTGGTGGCATATGAAGCTTTACCGCTTGCTCTGAAATATGAGTAGTATTTTGTTTTCAATTTTCAAATTTTCTTGCATTAATTTATGAATACTGAAGAATAAGTACATTTTTTGATTTAGCAATTTTTTCTATATATTGTTGAACGTAATATACTCTATGGACATATCAAAGTTCTCTGTTACTTTTAGTTATTATCCAATTTGTAAGCATTAAGAACAGAGTGAATgtgaaaatgtattcaaaatggttgccctctgctggtgatttgcagGATGTACAATATGTTGAAAGATTTGCCAAATATTTGTTTATATATTCTATATTCTTGTTTATATTATATTCATTAATTCATGTAAGAAAATTGTTATTGAAATCAAAATACCACTCATGTTTCAAAGTAAGTGGAAAAGATTTACAAGACACGGGTTTTTGTAGCACCTACATATGAAACTTGacgtcttaaaggaggcctgggtaAGGCCAAAATGTAATAACTATGACAACTTCAATTAATTATTTCTCAATTCTGCTTTTAaatacaaatgtaaaatatatttcaattaTCCTTCCTCCAAATAAGCATTCTATGGATTAAATGTTGTGAAATCTCCAAACTCATGGTATTTTGTCATCCTGGTTTTGTGAGGAATCACCGATATCCCAAATAAGGGCACAAACGTTATAATGGCTCCATGGGATGCTGTAATCTCAATTTTAGGTGCTCTTTTTTGATGAAAAATAATCTAAATGAAGAATATCAGATTGATGGTATATCTGATTTATGCTCCCACGTGTGCAATTTTAATACTTGGTTTTATTCTGTTTTCTATTGTGGTCGAAGAAGCTGGCTTCATGAGAGAAAAACATCAAATAAATTATTTGAAACGAATTGAAGTATCATGATGGGTTGTGTAGATGTGACTATAGATACATTTATGTTTCAAGGATATTTAGAGAGTATGTGATATTATCATGTCATGGTGGGTCTTCTTGTGCACAAACGTGGCTGCATTGATGCAATAATTTACAATTACAGCACAGAGGTTACAGTCTGGCTGTCCAAACCAATGATTGTATTATTTTCTTACCATAAAAAACAACTAC

Function

NR:

description
uncharacterized protein LOC110496040

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571677.2 True 7250 mRNA 0.46 3 33433366 33450101

Neighbor

gene id symbol gene type direction distance location
nrm nrm coding upstream 6814 33420834 ~ 33426552 (+)
exosc7 exosc7 coding upstream 43612 33380590 ~ 33389754 (+)
LOC110496035 tmem42 coding upstream 76675 33352795 ~ 33356691 (+)
LOC110496034 LOC106588202 coding upstream 261252 33086601 ~ 33172114 (+)
LOC110496033 LOC106588201 coding upstream 382985 32994534 ~ 33050381 (+)
LOC110496797 LOC106570068 coding downstream 6821 33455560 ~ 33458964 (+)
LOC110496041 LOC106588210 coding downstream 29995 33480096 ~ 33489024 (+)
LOC100136630 LOC106570065 coding downstream 58735 33508836 ~ 33512426 (+)
LOC118941240 NA coding downstream 60111 33510212 ~ 33510343 (+)
LOC118941235 NA coding downstream 60701 33510802 ~ 33510928 (+)
G1539890 cdcp1 non-coding upstream 35100 33394954 ~ 33398266 (+)
G1539887 NA non-coding upstream 41523 33391585 ~ 33391843 (+)
G1539886 NA non-coding upstream 42146 33390998 ~ 33391220 (+)
G1539824 NA non-coding upstream 46965 33292711 ~ 33386401 (+)
G1540519 NA non-coding downstream 11131 33461232 ~ 33461432 (+)
G1540520 NA non-coding downstream 11421 33461522 ~ 33461832 (+)
G1540522 NA non-coding downstream 12343 33462444 ~ 33462735 (+)
G1540540 NA non-coding downstream 24356 33474457 ~ 33474722 (+)
G1539671 LOC106582599 other upstream 373509 33058990 ~ 33059857 (+)
G1539641 NA other upstream 412822 33020228 ~ 33020544 (+)
G1538208 LOC106588182 other upstream 1679175 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 1853046 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 1861127 31568375 ~ 31572239 (+)
G1540551 NA other downstream 39236 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 85175 33535229 ~ 33537569 (+)
G1540996 NA other downstream 628617 34078718 ~ 34079074 (+)
LOC110496058 LOC106588349 other downstream 678240 34127192 ~ 34133734 (+)

Expression


Co-expression Network