LOC110496041 (LOC106588210)


Basic Information

Item Value
gene id LOC110496041
gene name LOC106588210
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33480096 ~ 33489024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571678.2
GGAAATTACTTCATGTGGTCTCGCGTTTTTGATCACGAACCGGAACAAACAAACGAAGCAAATGTCAAGCCGTGTTGTGATTAAGCAGCGCCAGTCATATGCAGACATTCAGCATTGGTGTTCGTTTCATTTAAAACAGGATCTATGAAGGGGAATAAGAGTACAGAGTAGTAGCACATGCGAGAACAATTGTATGTATTTGTAACATTTGTCTAAAGAAAAGGGAATACCGCCAAAGCAAGCAACAATATTGTAACCGGATTCGTAGGACATTGTGTACAACAGTGTAAGATATTTAAGTATTCGTTATATGTTTGTTTTTACCgatattttatgtttttttttaaataacgatGAACGGGCCCTCTTATGCAGTCTCTAGTCCAAGGAAGAGTGGTGCGACAAGGCTGTTGTGGTCACTGTTTGGTGCCTGCCTTGTTGCTGCAGTCATCGGGTACAAACCAGTGGTCATAGTTCATGGGTTGTTCGACAGCTCTGGGGCTTTTGTGGAGTTGCTTCGATTCATCAATCAGTCTCACCCAGGAACCAATGTGTCAGTCTTCGACCTGTTTGACCGCAGCTCCAGCCTACAGCCGCTATGGAAACAAGTGGAGGGCTTCAAGGCTGCCATCTATCCCATCATGCAAAACGCTGCAAATGGGGTCCACTTCATCTGCTACTCTCAAGGTGGACTGATTTGCAGAGGGATCCTATCTACTCTTCCTGATCACAATGTCCACTccttcatctctctgtcctcgcCTCAGGCTGGGCAGTATGGAGACACAAACTACCTGAAGTACCTCTTCCCCCAGTTCATGAAGTTCAACCTGTTCCATTTCTGCTACACCTCAGTGGGCCAAAGGATATCTATCTGCAACTTCTGGAAAGACCCCCATCACATGGACATGTATGTGAACAGCAGTGATTATCTGGCTTTATTGAACAGCGAGAGGACAAATCCCAATTCAACAGTGTGGAAGAAGAACTTCCTACGTATCAAGAAGCTGGTCTTAATCGGGGGGCCAGACGATGGAGTCATCACACCCTGGCAGTCCAGTCAGTTTGGATTTTACGATGACAACGAGACTGTCGTTGAGATAAAGGACCAGGATTTATATTTGAGAGATGTGTTTGGTCTGAAGACCCTAAATGCTCGTGGGGATCTGTTCCTGTGCTCCATGGCTGGAGTAGAGCACATCAATTGGCACTCCAATTACACCGTGTTCAACACCTGCATTGAAAAGTGGCTTGTCTAGAGCTGACTACTCCACCGAACAGCATGGGAAGAACAGTCCCATTTTCATACAATCGTTAGTGAAACACACACTCCTACTCATGCACAAAGTTTTACTTCTGCAGTGTGGTACTCATATTTCCACTGTGTGTGAAACTTTCATTGTGAACTACATCTTATGTTCTTACATTTCTGTGAGAATGAATCAAAACATtaccctcgtgtgtgtgtgtgtgtgtgtgtgttttacccacACATACTTTGAGGTATCACACAACAGTGCCTGACTGAGTGACATCCGGTACATTTGCAGACCCACTGCTCAGTTCATCTCATTGCTTAAGTGACTTTTACCATTGGTTTTTAGCTGGTAACAAATGTCTTTCTGACCTGTAAAGTAAACCGTTGGTCATTGCTAAGCCACCCGGCAGACCGCTGCAGTAGAAATCATGCCATTAGTTTTGTGTTACCCATGTGTCTGCGTTCCATTGTGTGTTTACAAACTGAAGTGCTATGGCACACTGCCTCTAGTGATTGTGCTAAAAGGGGGGAGAGGATAGAAAAAAGGGAAGAGCTACTggagacaaaaaaacaaaacaaaaaaagaatATGAGAACGGAAGGAGGGTTTAGGAATGGATGGAAGGGGAGTAGAGTGCCAGTGCCATGAGGTAAGTTACCTGTCCACTTGAGCATAATGTACGTGACTTACCTGTACCTCTCGTTGCAATTTGGTATCTCAGGCTTTTGATCAAACCTGTGTCTGTTTTTGTCAAAGGAATGATTTATTTTTAACTTGACTGTTTTGTTATAGGTGTTTTTATTGTATGACAGGGGATTGCCTGTGAGACGATAGTAATTTCACTAAGTTACAATGTGAATTAAGGTGGCAAGCATTGCACAAAGATTGAAAATGTTATCTGCTTAAATGTCATTTGATGTGAACTTAAAATGAGACTCAGATTGTTATATTTTCATTGTTGACATTGCAGTATTAAGTGTATTTTAATATTGTCACATACTTCCTGGTTTATGTTCTGCTTCTAAGGGAAGTTCTGCTTCTAAGGGAAGTTTTAAAATTGACATTGCATAAATCAATAGATTACTGAAAGGGAT

Function

NR:

description
lysosomal thioesterase PPT2-A-like isoform X1

GO: NA

KEGG:

id description
K01074 PPT; palmitoyl-protein thioesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571678.2 True 2352 mRNA 0.42 8 33480096 33489024

Neighbor

gene id symbol gene type direction distance location
LOC110496797 LOC106570068 coding upstream 21132 33455560 ~ 33458964 (+)
LOC110496040 LOC106588209 coding upstream 29995 33433366 ~ 33450101 (+)
nrm nrm coding upstream 53544 33420834 ~ 33426552 (+)
exosc7 exosc7 coding upstream 90342 33380590 ~ 33389754 (+)
LOC110496035 tmem42 coding upstream 123405 33352795 ~ 33356691 (+)
LOC100136630 LOC106570065 coding downstream 19812 33508836 ~ 33512426 (+)
LOC118941240 NA coding downstream 21188 33510212 ~ 33510343 (+)
LOC118941235 NA coding downstream 21778 33510802 ~ 33510928 (+)
LOC118941241 NA coding downstream 22806 33511830 ~ 33511959 (+)
LOC110496043 LOC106588212 coding downstream 46205 33535229 ~ 33537569 (+)
G1540545 NA non-coding upstream 2497 33477310 ~ 33477599 (+)
G1540543 NA non-coding upstream 3277 33476309 ~ 33476819 (+)
G1540542 NA non-coding upstream 4311 33475574 ~ 33475785 (+)
G1540540 NA non-coding upstream 5374 33474457 ~ 33474722 (+)
G1540522 NA non-coding upstream 17361 33462444 ~ 33462735 (+)
G1540561 NA non-coding downstream 11891 33500915 ~ 33501117 (+)
G1540562 NA non-coding downstream 12190 33501214 ~ 33501433 (+)
G1540563 NA non-coding downstream 14241 33503265 ~ 33503483 (+)
G1540553 NA non-coding downstream 25184 33514208 ~ 33517215 (+)
G1540567 NA non-coding downstream 35299 33524323 ~ 33524542 (+)
G1539671 LOC106582599 other upstream 420239 33058990 ~ 33059857 (+)
G1539641 NA other upstream 459552 33020228 ~ 33020544 (+)
G1538208 LOC106588182 other upstream 1725905 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 1899776 31578096 ~ 31580320 (+)
G1540551 NA other downstream 313 33489337 ~ 33491121 (+)
G1540996 NA other downstream 589694 34078718 ~ 34079074 (+)
LOC110496058 LOC106588349 other downstream 639317 34127192 ~ 34133734 (+)
mbpa LOC106588233 other downstream 1394490 34883492 ~ 34898413 (+)

Expression


Co-expression Network