LOC110496043 (LOC106588212)


Basic Information

Item Value
gene id LOC110496043
gene name LOC106588212
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33535229 ~ 33537569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571683.2
TCCAAATTCAATTAGGAGAGTTTTGGGTGGAGACCTTGACTCCCAATGTGTCTGGTTGGTCAGAAATAAAGAGGACCAGACATGGGGAGGTAGATTGAGGGAATTTACAACTGACCATTTGAGGACAATACAACTGACATCTGGTCACTTATTGCGTTATCAGAGAGGGAAATATCACAGTAGGAAAATACATGTAGTTGACTGGGAGAGAAAGACTGAGAGTTGGATGGATTTGATACTGACTTGGAAGGAAGGCAAGGGAAATTCAATTTGGGAGTAGAGCGAGGCTGAAGATATTAGGCAGGGGCGTTGACCAAAACAACAGAAGAGTTTGTAATATCTTCCAAAGTGCCAAAGGATCAACTTCTAGGACTTCTGCGATGTCTCATCCACAACTGTTTCTTCTTTTCCTGTGCTGTCTTCCTCTGGCAGCACCTCTGTGTTGTTACACATGTGTGTTTCCTGCCATCTCTCCCATGGACTGCCTCAAGTTCCCCCAGGAGTGTCCTGCTGGACAGCGCTgcctagctagcactgcagtgggGACGCGAGGCTCCCTGCGTCTGGTCCTGTATGAGAAGAGCTGTGCCATTCCCTCCCAATGTGGTCTGTCTGGGGAGAAACATACTGCAGGCCTGAACTTCACCTACCACAACAACTGCTGTGACACTGACCTGTGCAACGGGGCTATGGCCCATGCTGCCCCCATCTGGAGGGGAGGTGCACTGTGCATCCtgcctattctctctctcatacaggGCTGATATACTGATTTATTGCATGTTATATGAAAATGCACAATCATACAATAACATGCACAACCTATATATGTCATGGCGTGAATCCCACTAACCAAAACAATCTTAGTATAGACATACACAGTGTGACAAACTGACAGTGCCTCGTTTACATGAGCTGCTTACAgacaatagacacacacacacacacacacacacacacacacacatatcacactATTTTAATGACAACGTAACTAGAGACAAAACATAATGTTGATGAAAATGGTACTTTGTTAAGAACCTTTGTTTAAATATGGGTTAGCTTTCTAATGTTTAGACTTTTCAACTGTGCTATATTTAACATTACCTTGTTGGAAAATTACTGGCAGCAATTAATaaacagacaaacaaaacaaaacaa
>TU1763040
GTGTCTGGTTGGTCAGAAATAAAGAGGACCAGACATGGGGAGGTAGATTGAGGGAATTTACAACTGACCATTTGAGGACAATACAACTGACATCTGGTCACTTATTGCGTTATCAGAGAGGGAAATATCACAGTAGGAAAATACATGTAGTTGACTGGGAGAGAAAGACTGAGAGTTGGATGGATTTGATACTGACTTGGAAGGAAGGCAAGGGAAATTCAATTTGGGAGTAGAGCGAGGCTGAAGATATTAGGCAGGGGCGTTGACCAAAACAACAGAAGAGTTTGTAATATCTTCCAAAGTGCCAAAGGATCAACTTCTAGGACTTCTGCGATGTCTCATCCACAACTGTTTCTTCTTTTCCTGTGCTGTCTTCCTCTGGCAGCACCTCTGTGTTGTTACACATGTGTGTTTCCTGCCATCTCTCCCATGGACTGCCTCAAGTTCCCCCAGGAGTGTCCTGCTGGACAGCGCTgcctagctagcactgcagtgggGACGCGAGGCTCCCTGCGTCTGGTCCTGTATGAGAAGAGCTGTGCCATTCCCTCCCAATGTGGTCTGTCTGGGGAGAAACATACTGCAGGCCTGAACTTCACCTACCACAACAACTGCTGTGACACTGACCTGTGCAACGGGGCTATGGCCCATGCTGCCCCCATCTGGAGGGGAGGTGCACTGTGCATCCtgcctattctctctctcatacaggGCTGATATACTGATTTATTGCATGTTATATGAAAATGCACAATCATACAATAACATGCACAACCTATATATGTCATGGCGTGAATCCCACTAACCAAAACAATCTTAGTATAGACATACACAGTGTGACAAACTGACAGTGCCTCGTTTACATGAGCTGCTTACAgacaatagacacacacacacacacacacacacacacacacacatatcacactATTTTAATGACAACGTAACTAGAGACAAAACATAATGTTGATGAAAATGGTACTTTGTTAAGAACCTTTGTTTAAATATGGGTTAGCTTTCTAATGTTTAGACTTTTCAACTGTGCTATATTTAACATTACCTTGTTGGAAAATTACTGGCAGCAATTAATaaacagacaaacaaaacaa

Function

NR:

description
prostate stem cell antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571683.2 False 1161 mRNA 0.44 3 33535229 33537569
TU1763040 True 1109 TUCP 0.44 3 33535276 33537564

Neighbor

gene id symbol gene type direction distance location
LOC100136630 LOC106570065 coding upstream 22803 33508836 ~ 33512426 (+)
LOC118941241 NA coding upstream 23270 33511830 ~ 33511959 (+)
LOC118941235 NA coding upstream 24301 33510802 ~ 33510928 (+)
LOC118941240 NA coding upstream 24886 33510212 ~ 33510343 (+)
LOC110496041 LOC106588210 coding upstream 46205 33480096 ~ 33489024 (+)
LOC110496055 LOC106588221 coding downstream 401113 33938682 ~ 34059960 (+)
LOC110496056 dpy19l4 coding downstream 542539 34080108 ~ 34088560 (+)
ints8 ints8 coding downstream 554678 34092247 ~ 34116282 (+)
LOC110496058 LOC106588349 coding downstream 589623 34127192 ~ 34133734 (+)
trhrb LOC106588145 coding downstream 723743 34261312 ~ 34265470 (+)
G1540568 NA non-coding upstream 10176 33524813 ~ 33525053 (+)
G1540567 NA non-coding upstream 10687 33524323 ~ 33524542 (+)
G1540553 NA non-coding upstream 18014 33514208 ~ 33517215 (+)
G1540563 NA non-coding upstream 31746 33503265 ~ 33503483 (+)
G1540562 NA non-coding upstream 33796 33501214 ~ 33501433 (+)
G1540586 NA non-coding downstream 17217 33554786 ~ 33558100 (+)
G1540588 NA non-coding downstream 32710 33570279 ~ 33579015 (+)
G1540590 NA non-coding downstream 34064 33571633 ~ 33582747 (+)
G1540606 LOC106588215 non-coding downstream 64349 33601918 ~ 33608105 (+)
G1540621 NA non-coding downstream 83821 33621390 ~ 33621658 (+)
G1540551 NA other upstream 44108 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 76805 33455560 ~ 33458964 (+)
G1539671 LOC106582599 other upstream 475372 33058990 ~ 33059857 (+)
G1539641 NA other upstream 514685 33020228 ~ 33020544 (+)
G1538208 LOC106588182 other upstream 1781038 31753710 ~ 31754191 (+)
G1540996 NA other downstream 541149 34078718 ~ 34079074 (+)
mbpa LOC106588233 other downstream 1345945 34883492 ~ 34898413 (+)
G1541989 NA other downstream 1745034 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 1837675 35373871 ~ 35386463 (+)

Expression


Co-expression Network