LOC110496044 (LOC106588213)


Basic Information

Item Value
gene id LOC110496044
gene name LOC106588213
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33560842 ~ 33573866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571686.2
TATACTTCATTCTAGTCTCCATCTGCATCACACCTTTAGCAGGAAACTGGATGTTTCCCCATTCATTTGATTAGTGTTCTTTCCCGTCTCTGTAAAGTGAATAGATTCTGCAAATAGCCCTCCTATTGAGAACAACAAACACTAGCCTCCTACAAGAAGATGAAGAGTAAAATTTTGATTGTGCTGACTGTCCTGGTGGTCTTCATAGCAGTGGCCCAGTCCTTGACCTGTAAGCAGTGCAGTGTGGGGCTCTTTGGGACATGTTTCTTTCCCAAAAACATGGTGTGTGACAACTCCACTCTCAACTGCTTCACCGGAGAAGCAAAATTCAATTCCACTGAGATTCTGACACTCCACACCCGTGGTTGTCTGGACTCAGACCTGTGTGGCAAGACCATCACTGCAACCATCTTTAGTGCTGGTGTCACGAGCAGCTCCTCATGCTGCCAGACAGACCTGTGTAACGGGGCCAGCTCCGTCCAGGTCTCTGTGACTGTGGCACTCAGCGCCGCCCTGATGGCCTGGGGTGTTTAGACTGGACAAACAATGACTTCTGTTCACAGTGTTGTTTAAACCTGTTACACTTCTGTTCACACTGTTTCACACTGTTTAAACAGGTTTCAGACTACTTTGTCTCCATCCTCTATTAACTAGGTTTGGCACAGTGAGCTCAGAATTTGTCTTAAACTCCTCATCTACTTTAATAACATTTATCAACTGAATAATACTTGCAACTATGATACGCAACAACTTAAAGTGCCTTTacactactctactgaacacacaTACAAATACTGTAATATTATTCTGAATAATAAAGGAATTAAGTTGTGtcacaaaatggggaaaaaaggtgctgtttttcattgttGACACAATAATGTCCTCTACACTTTtatattcagacattttaattgaGAATGTACTGTTTGGACAAAATTCTGAAACAATAATGGATGTTTGCATGATAATAAGTTGAACAAATACTGCTTTAGTTAGGAGGCTGCCAATCTGTCAAACATAAGAAACTGTAACTGAGTAAATGGTCAAATAAATTCAAGACAAACTTATacatctagggttagggttaggctatgGCTCAGGTAAGGGTTGAGCCAGTGTGTGGACATCAAGCTAGTGTCCGTGTACATCATTTGGGTGTCTattcacattagcctacgttaatGTGTCTTCTACAGTAGGAGATTCCACCCTGACACCATAGGCAGCCGAACTCAGCTGGCAGACAGGCTGATGGAATCGTTCTCCACCCTGTTTCCCTGCAACTCACTTTCAAACCAATACCGCCATCAAGTGCATGAGAGAGACGACAGCACATTCGTGAATCGACGACTCGGCCCAATGCTGTCAAATGTCCAGAAAATAGTACTTAAATTAGATGACTGGTGGGTTTGATTTCAGATTCAGTGTGGTTCTACCACACCAAATACCTACATATGCATATTTCAATATAAGCACGTCAATATATATAAGCACCTCTCATTGATCTCAAAGGCCAGATTTAAACACAGCATCTGTTTCCCCTGATGAATGTAATTGTATGTACACATCATGTAATAACAATGGTATTATTTATAGTAGCTTGTGTTTTATACCCTTCTGGTGTAGAGCATATAAACATGAATAAACCCACCTAATTGTCATGATATCACAATTTTCCAGGAAGTGGAATTAGTCAAATATTAAAATATGTAGATAATTGTCTACCTACATAATGACACATATCAATAAAATAATACACCAGAACACCTGATTAAGTGTCACACAACACCTTCAAATGTCTGTTACATAAGCTTATCACTGACGCTTGAGTGCCTGACCCGATGAGCAGACAACCGACATTTAAATATCTTCATGTACAGTAGGCTGCATTAACAAGATGAAACCACTCAATATCGCGGTCTGCCGGTCGTTGGGCTAGTACAGGTGCAATTCCTTCCACGTTGTGTAGGCTTCTTTTTTATTTCATAACCCAAATTGCATAGGTGACCTACTATAGACTAACGGAATAGTTGGGAACATGTAATTACACCTTCCCTTCTTCGCCCCTCTCTTTTCCACATCtctcacgtacacacacaatcGGTGGAGTTGAGTCGGCTAGGTTAACATCACTCGTTGCTAGTTGAGCGTTGTTGGCTTCCACCATCAGGAAATGGAGGATGAGTGTGTAGCGAGCGACACAGAGGGAGGGGAAACTGACTAGACGTTTACTGGAAGTCCCACACAGAACGTGAGCGAGGTCTTCCAGTTCCAGTGGCAACATTTTAAACAAAAAGATGAGTGACGAAAATAGACTTCAAGTTGAACTTTTTGTGAAGGCAGGCAGTGATGGCCAGAGCATTGGCAACTGTCCATTCTCCCAGCGCCTCTTCATGGTGCTGTGGCTCAAAGGAGTCACTTTCAACGTCACCACCGTGGACATGAAGAGGAAACCAGAGATCCTTAAGGACCTGGCCCCTGGTGCTCAGCCCCCCTTCCTGCTCTACGGGACGGAGGTGAAAACCGACACCAACAAGATAGAAGAGTTCCTGGAGGAGAACCTGTCCCCTCCAAAATACCCCCGCCTGGCTTCCAGGAACCCTGAGTCTAACACAGCCGGCCTAGACGTGTTCTCCAAGTTCTCAGCCTACATCAAGAATTCAAACCCCCAGCTTAATGACAACCTAGAGAAAGGCTTGCTCAAGGCCCTGAAAAAGCTAGACGAATACCTTGGCTCCCCACTTCCTGACGAGATTGACGAGAATAGCGCTGATGATGTCACTTCCTCCTCCCGTCCCTTCCTGGATGGGCAGGTCCTCACTCTGGCCGACTGCAACTTGCTTCCCAAGCTGAACATTGTCAAGGTGGTGTGTCTGAAGTATCGCACTTTCTCCATCCCCAAGTCTCTCTCCAACCTGTGGCGGTACCTGGATGCTGCGTACGCCCACGAGGAGTTCTCCTCTACCTGCCCCAACGACACAGAGATACACATCGCCTACTCAGCCGTGGCTAAAGCACTTAAGTAGGAGGACAAGGGGATCTCATCAGTCACACACACCagcaaatacacacatacacacacacctgatcagATATCCTAGACACACTCACCTACCTACTTGTGGCACTGTACATGtggcagcatacacacacaccaatgcactCAAACATACAGGCACTCCCTCAGACACACGCACACCATTCCAACAGTCTTTCTTGAGAACAGGAAATCAAATCACTGTAAGATCAAGTTGAACATTTTTCATTGACCACTTAAGAGTTTGTGAAACTCTCTGAGGCGTATAGTTTATGGTTCCCTTTTTGTCACGTGGCACATCCACTCTTGATACTGTGTATTCAGGGGCAGTTACACACAGTTAAAGTTGTATACACGGGCAGTAGGTTACATATGGTTGCATCCAACTGAAGGTATAGTGGTCTGTTCAGTCTCTATGATTAATTCTGCACTGCATACATTGCCACATTACCCCCTATTAATTTCTATCTCTCGGCCAAGCCATAAAAAAAACTGTTCCTGTTGTGattacacacatacacgcataccTAGACCAGTTTAACTGCTACCTGCAGCTGAAagagagaggttagttctagGCGTGTCTACAATTATACATTATTACCGACATATTATTACAGTGTTGATATATTGTTCAGGGCAAACAGCCGTTAACAGGGTGGATGACATGGTCAGTTTGAACCAGTCATTTTATACATGCTAAATGATCAGAAGTTAGGCTCAGGGAACGGGAAAGCAGGTCTTGGGCCAATTGTAGTACATTGGGGCACACTATACAGAGGTGTTTCTCAGCACACATTTATCCACACAGAAAACGATTTCAACAGATCTCGGCTTCTCCTTTCTCCGGCTTGTAGCGCTGTGAAGGGTTTATCAAGCTTATGTCCCCATTGTAAAGGCTCTTTTGctagtgaatcaaatcaaattgtatttgtcacatgggctgaatacaacaggtctgtagaccttacagtgaaatgcttacttcaccaacaatgtagttttaagaaaatacctttaaaaaaaaaagtcaagagaataaagtaacaaataattcaagagcggcagtaaaataacaattgcgaggctatatacagggggtaattcAAAGTGAAGGATATTTTtgatacaataaaaaaaaaactgtgagAGGCTCCTATTGCAGAGCAGTTGAGTTACTCCAGACAAAGTAATATGGCTATTGTCGCTGTTTATGTTAAACTAGGTTTTTGAGGAAGTACTTGACTCTGTATGGCCTTGAGGCACCAAGCCCGTTCAGTCATGTTTCACTGTAAATCTGCGGGAAAACTACAGGATGTAATGCAGACGTGCACACACCTCCTCGCATGACTAAACCATAAACGTCACATTCATACAAATTTGAGATGTTCTTTGCATAGAAACTGAAATCTCCAAGGGGAGAATGCTACGGGATTGTGAGTTTGTACTCTTTGATATGGTTAATGACAATGAAAGACTCAATTAAACTTGAAAAAAGAAAAGAGTTTGAACCTTTAGTGAGCCAAAGGAAGGGTTTTACTTGAGGTCTATTGAGGTGGGTGTTGTTTAGGTTGTTTAAATCGACAACACCTTTGAACCTACTACCGTCCTGTGCTTTGTAGTGCACACTTTGAAGTCTTCCATTTTACAGTGACTTGAAATTCAGTCCCCTGGGAAAGAACTGGAAATATTTGTTTGGGTTCTATACAATCCATATCAGCGTATCAAGTTCAGCGTTACAGCGTGAttgacatttaaaggcaatgttccggCTTTAAAGGAGATTGTATTCACGCTAAACGCTGCATATGCCGCTCAATCGGAAATGAGCTCTCTATAGTGCAATCTTCAGCGACACAGATCGAATAGAGCGCTCAGACTGACTCATAGATGGTGCAGTCTCATGGTACTGACTTAAGTGGATCAGCTTAAAACAGCCTTGTTTTAAGCTGATCCAATTTGAGTGTACAAAACctttgtgtacaaaacattaggaacacatgctctttccatgacatagactgaccaggtgaatccaggtgaaagccatgatcccttattgatgtcacctgttaaatccacttcaaatcagtgtagatgaaggggaggagacgggttaaagaaggattggagacaattgagacatgaagtGCGGTGACATGCACAAAATAATatgattattgtggatagtcaggTTAATATAGTAGTTTGCTTAAAATGTTaacatgctttgcaagaataCCAATTTCCCTAAtgatcctgtttacatggacacatctgaagtcaggctacctgatgggacttttgataaatgcagaaaatagccaatcaaaataaacgttctaccacagtaaccatgttatttttgagAAGACTATTAGATTCTGAGTTCGGACACAAAGTTTGTGTGTGAAAGCTATTTATAAGATGCATACTTTCCGTTTTTAACAACTCACTTCACTCGCGTTTAAGATGGAGACTTGCGCTACCGATGCTGGCACATGCTCAGATCAAATACACCGCTAATAAtttgaaagattgctcagaaaaccagttGTTTTAATCGGCGTATgcttactttgattttgaccttAAACCGATTAGGATAACCAGAGTAAGGGgtttacatgactaatgccatacgTGGCcttctgccataatcagtttaatatcgaatggttagagggtgaatgggcaagacaaaagatgtaagtgcctttgaacgggtatggtagtaggtgcctggcGGACCTGTTTGAAGTGTGTCACGGTAAGTTCCCCGTCCACTCAGTCTCCTAGCTCCCCgtccactcagcctactagctccccgcccactcagtctactagttCGCCGTCCAgtcagcctactagctccccgtCCACTCAGTCTCCTAGCTCCCCgtccactcagcctactagctccccgcccactcagtctactagttCGCCGTCCAGTCAGCCTACTACCTCCCCGTCCACTCAGTCTCctagctccctgtccactcagtctactagttCGCCGTCCAgtcagcctactagctccccgtccactcagcctactagctccccgcccactcagcctactagctccccgcccactcagcct

Function

NR:

description
chloride intracellular channel protein 1-like isoform X1

GO: NA

KEGG:

id description
K05021 CLIC1; chloride intracellular channel protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571686.2 True 6146 mRNA 0.43 9 33560842 33573866

Neighbor

gene id symbol gene type direction distance location
LOC110496042 ddah2 coding downstream 27155 33526141 ~ 33533687 (-)
cdcp1b cdcp1 coding downstream 145884 33392413 ~ 33414958 (-)
LOC110496036 LOC106588206 coding downstream 181334 33366687 ~ 33379508 (-)
LOC110496796 osbpl10 coding downstream 251511 33172426 ~ 33309331 (-)
eomesa eomesa coding downstream 1106459 32450001 ~ 32454383 (-)
LOC110496046 lynx1 coding upstream 5930 33579796 ~ 33581971 (-)
LOC110496048 LOC106588215 coding upstream 33083 33602474 ~ 33610948 (-)
LOC110496928 NA coding upstream 69060 33642926 ~ 33652838 (-)
LOC110496049 LOC106588217 coding upstream 83832 33657641 ~ 33674304 (-)
LOC110496050 csnk2b coding upstream 118526 33692392 ~ 33695909 (-)
G1540656 NA non-coding downstream 22648 33537970 ~ 33538194 (-)
G1540627 LOC106570065 non-coding downstream 46858 33508819 ~ 33513984 (-)
G1540648 NA non-coding downstream 52231 33508353 ~ 33508611 (-)
G1540640 NA non-coding downstream 62543 33498069 ~ 33498299 (-)
G1540637 NA non-coding downstream 66040 33494599 ~ 33494802 (-)
G1540713 NA non-coding upstream 46570 33620436 ~ 33621322 (-)
G1540633 NA non-coding upstream 49681 33623547 ~ 33623787 (-)
G1540717 NA non-coding upstream 53113 33626979 ~ 33627240 (-)
G1541007 NA non-coding upstream 82859 33656725 ~ 33656944 (-)
lrp12 lrp12 non-coding upstream 280021 33828341 ~ 33867431 (-)
G1540473 LOC106581475 other downstream 169090 33391339 ~ 33391752 (-)
G1540148 NA other downstream 624273 32899578 ~ 32936569 (-)
G1539348 NA other downstream 998722 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1502057 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1845661 31714506 ~ 31715181 (-)
G1541318 NA other upstream 588061 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1161508 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1563771 35137637 ~ 35138554 (-)

Expression


Co-expression Network