LOC110496046 (lynx1)


Basic Information

Item Value
gene id LOC110496046
gene name lynx1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33579796 ~ 33581971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952525.1
CCTGCTATACTTCATTCTAGTCTCCATCTGCATCACACCTTTAGCAGGAAACTGGATGTTTCCCCATTCATTTGATTAGTGTTCTTTCCCGTCTCTGTAAAGTGAATAGATTCTGCGAATAGCCCTCCTATTGAGAACAACAAACACTAGCCTCCTACAAGAAGATGAAGAGTACAATTTTGATTGTGCTGACTGTCCTGGTGGTCTTCATAGCAGTGGCCCAGTCCTTGACCTGTAAGCAGTGCAGTGTGGGGCTCTTTGGGACATGTTTCTTTCCCAAAAACATGGTGTGTGACAACTCCACTCTCAACTGCTTCACCGGAGAAGCAAAATTCAATTCCACTGAGTTTCTGACACTCCACACCCGTGGTTGTCTGGACTCAGACCTGTGTGGCAAGACCATCACTGCAACCATCTTTAGTGCTGGTGTCACGAGCAGCTCCTCATGCTGCCAGACAGACCTGTGTAACGGGGCCAGCTCCGTCCAGGTCTCTGTGACTGTGGCACTCAGCGCCGCCCTGATGGCCTGGGGTGTTTAGACTGGACAAACAATGACTTCTGTTCACAGTGTTGTTTAAACCTGTTACACTTCTGTTCACACTGTTTCACACTGTTTAAACAGGTTTCAGACTACTTTGTCTCCATCCTCTATTAACTAGGTTTGGCACAGTGAGCTCAGAATTTGTCTTAAACTCCTCATCTACTTTAATAACATTTATCAACTGAATAATACTTGCAACTATGATACGCAACAACTTAAAGTGCCTTTacactactctactgaacacacaTACAAATACTGTAATATTATTCTGAATAATAAAGGAATTAAGTTGTGtcacaaaatggggaaaaaa

Function

symbol description
lynx1 Enables acetylcholine receptor binding activity and acetylcholine receptor regulator activity. Involved in regulation of neurotransmitter receptor activity. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be anchored component of membrane.

NR:

description
ly-6/neurotoxin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952525.1 True 857 mRNA 0.44 3 33579796 33581971

Neighbor

gene id symbol gene type direction distance location
LOC110496044 LOC106588213 coding downstream 5930 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding downstream 6089 33572014 ~ 33573707 (-)
LOC110496042 ddah2 coding downstream 46109 33526141 ~ 33533687 (-)
cdcp1b cdcp1 coding downstream 164838 33392413 ~ 33414958 (-)
LOC110496036 LOC106588206 coding downstream 200288 33366687 ~ 33379508 (-)
LOC110496048 LOC106588215 coding upstream 24978 33602474 ~ 33610948 (-)
LOC110496928 NA coding upstream 60955 33642926 ~ 33652838 (-)
LOC110496049 LOC106588217 coding upstream 75727 33657641 ~ 33674304 (-)
LOC110496050 csnk2b coding upstream 110421 33692392 ~ 33695909 (-)
LOC110496051 LOC106588219 coding upstream 115192 33697163 ~ 33746785 (-)
G1540656 NA non-coding downstream 41602 33537970 ~ 33538194 (-)
G1540627 LOC106570065 non-coding downstream 65812 33508819 ~ 33513984 (-)
G1540648 NA non-coding downstream 71185 33508353 ~ 33508611 (-)
G1540640 NA non-coding downstream 81497 33498069 ~ 33498299 (-)
G1540637 NA non-coding downstream 84994 33494599 ~ 33494802 (-)
G1540713 NA non-coding upstream 38465 33620436 ~ 33621322 (-)
G1540633 NA non-coding upstream 41576 33623547 ~ 33623787 (-)
G1540717 NA non-coding upstream 45008 33626979 ~ 33627240 (-)
G1541007 NA non-coding upstream 74754 33656725 ~ 33656944 (-)
lrp12 lrp12 non-coding upstream 271916 33828341 ~ 33867431 (-)
G1540473 LOC106581475 other downstream 188044 33391339 ~ 33391752 (-)
G1540148 NA other downstream 643227 32899578 ~ 32936569 (-)
G1539348 NA other downstream 1017676 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1521011 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1864615 31714506 ~ 31715181 (-)
G1541318 NA other upstream 579956 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1153403 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1555666 35137637 ~ 35138554 (-)

Expression


Co-expression Network