LOC110496048 (LOC106588215)


Basic Information

Item Value
gene id LOC110496048
gene name LOC106588215
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33602474 ~ 33610948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571689.2
CCCAATTCTGACAGTATAAAATCCAATGTCTAGGACCCAGGCTTTACCAGTTGGTTTTGCTAAATAAGACGTTTGAAAGGGATTTTTTTTTGCGATCAAATCTCAACTCATCACTTCTGTCAAGATGAACAAAATCGTTTTCGGAATCCTTGCAGTTGTTGCATCTTTTATGCTAGTGGAGTCGCTGACATGTAACAAATGCGATGTGGGCCTGGTGGGCGTTTGCCTAAATGCTGCTGATCAGGTCTGCACAACCAACACAAGTCGCTGCTTCACTGGAAAAGCTAccTTCCCCTCCCTCAGTACTTTCCTAGGCTTCAACACCCAAGGCTGTCTGGAGAGTGCTATGTGCAACACCACCGATGCCACCCTCATGGGCGCCACCTACACCATTGTCAGGACCTGCTGCGACACCAACAAGTGTAACCCAGTCACAATCAGCGGCGCAACCTCTGCCAAGCTCTCTGTCACCGCAGCCCTCAGTGCCACCCTGGTGGCCTCCGTGTGGGGCAGCATGCTGTACTAGAACTAGAACAACTAGAAGACACATTCTGATTCTGATTCCGAAGAACCAGAAGACAGCCCCAACATCGAAATAAAGACTTTACATCCTCCAGTCTGAAATAAAGACCAATCTTAGTATGTTTATACATCATGAAATTAGTGTTGTTTTAGTAAACCGGTTTGACGAAATGTGTGTTTCATTCACACTGCATGTTTAAACCAGCTTGACTTGTTTTTCTCATGTTTTGATGGTATGCTGTCACATCGCCCTCTCAAGTTCTTTGCCTCCTATCAGAAAAATGCACCGAGTATCCATAATCAAAGGCTTTTTAGTTATCACCTCAAATTTTGAGAGAAGCACATGTCTCAGAATGCATTAAAGACACTCATTTTGTTACTTATTAGATACTTATTGTTTTGGAAGTCGATCAGTGTATTGTTGAAGCTGTAACATTGAATTCTTAAACTTTACATATGTGTTTTTCTTCGTTCTAATTAAGCTTAAGTTACTATGTGTGGCGGCGTATGTATTATGGAATGAAAATAATGGAAAGCAATCTTTCATTTTTTGCTGTTTTGAATTATCAGCAGTTTTGTAATTAAAAGGAATCACTCACTTTGGTGCAATTTTCACGTGGTACATTTTCCCAACTCTTAGCATAAAGATCGAAACAGATCATCAAAATGCATCATGTTTCAATACTCTAAGTACATGTTCAATTGACTGAGTACAACAAACAAATTCACAAGTCACTTTTTCACTGCACCAGATCACTTTCAATTTCCATTTTTTTGCACCTAAACGTCTATATcggtgggcggcaggtagcctaacagaaaggtcgctggttcgaatcccagagccgactaggtgaaaattcTGTCTGTGTGACCTTGAGCAATTCACTTAACCCTTATTGCTTCTgga
>TU1763210
TTTGCTAAATAAGACGTTTGAAAGGGATTTTTTTTTGCGATCAAATCTCAACTCATCACTTCTGTCAAGATGAACAAAATCGTTTTCGGAATCCTTGCAGTTGTTGCATCTTTTATGCTAGTGGAGTCGCTGACATGTAACAAATGCGATGTGGGCCTGGTGGGCGTTTGCCTAAATGCTGCTGATCAGGTCTGCACAACCAACACAAGTCGCTGCTTCACTGGAAAAGCTAccttccccTCCCTCAGTACTTTCCTAGGCTTCAACACCCAAGGCTGTCTAGAGAGTGCTATGTGCAACACCACCGATGCCACCCTCATGGGCGCCACCTA
>TU1763213
TTTGCTAAATAAGACGTTTGAAAGGGATTTTTTTTTGCGATCAAATCTCAACTCATCACTTCTGTCAAGATGAACAAAATCGTTTTCGGAATCCTTGCAGTTGTTGCATCTTTTATGCTAGTGGAGTCGCTGACATGTAACAAATGCGATGTGGGCCTGGTGGGCGTTTGCCTAAATGCTGCTGATCAGGTCTGCACAACCAACACAAGTCGCTGCTTCACTGGAAAAGCTAccTTCCCCTCCCTCAGTACTTTCCTAGGCTTCAACACCCAAGGCTGTCTGGAGAGTGCTATGTGCAACACCACCGATGCCACCCTCATGGGCGCCACCTACACCATTGTCAGGACCTGCTGCGACACCAACAAGTGTAACCCAGTCACAATCAGCGGCGCAACCTCTGCCAAGCTCTCTGTCACCGCAGCCCTCAGTGCCACCCTGGTGGCCTCCGTGTGGGGCAGCATGCTGTACTAGAACTAGAACAACTAGAAGACACATTCTGATTCTGATTCCGAAGAACCAGAAGACAGCCCCAACATCGAAATAAAGACTTTACATCCTCCAGTCTGAAATAAAGACCAATCTTAGTATGTTTATACATCATGAAATTAGTGTTGTTTTAGTAAACCGGTTTGACGAAATGTGTGTTTCATTCACACTGCATGTTTAAACCAGCTTGACTTGTTTTTCTCATGTTTTGATGGTATGCTGTCACATCGCCCTCTCAAGTTCTTTGCCTCCTATCAGAAAAATGCACCGAGTATCCATAATCAAAGGCTTTTTAGTTATCACCTCAAATTTTGAGAGAAGCACATGTCTCAGAATGCATTAAAGACACTCATTTTGTTACTTATTAGATACTTATTGTTTTGGAAGTCGATCAGTGTATTGTTGAAGCTGTAACATTGAATTCTTAAACTTTACATATGTGTTTTTCTTCGTTCTAATTAAGCTTAAGTTACTACAATGTGTGGCGGCGTGTGTATTATGGAATGAAAATAATGGAAAGCAATCTTTCATTTTTTGCTGTTTTGAATTATCAGCAGTTTTGTAATTAAAAGGAATCACTCACTTTGGTGCAATTTTCACATGGTACATTTTCCCAACTCTTAGCATAAAGATCTAAACAGATCATCAAAATGCATCATGTTTCAATACTCTAAGTACATGTTCAATTGACTGAGTACAACAAACAAATTCACAAGTCACTTTTTCACTGCACCAGATCACTTTCAATTTCCATTTTTTTGCACCTAAACGTCTATATCGgtgggcggcaggtatcctaacagaaaggtcgctggttcgaatcccagagccgactaggtgaaaattcTGTGTGTGTGACCTTG

Function

NR:

description
sperm acrosome membrane-associated protein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571689.2 False 1432 mRNA 0.41 3 33606949 33610948
TU1763210 False 332 TUCP 0.47 3 33602474 33610893
TU1763213 True 1349 TUCP 0.41 4 33604148 33610893

Neighbor

gene id symbol gene type direction distance location
LOC110496046 lynx1 coding downstream 24978 33579796 ~ 33581971 (-)
LOC110496044 LOC106588213 coding downstream 33083 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding downstream 33242 33572014 ~ 33573707 (-)
LOC110496042 ddah2 coding downstream 73262 33526141 ~ 33533687 (-)
cdcp1b cdcp1 coding downstream 191991 33392413 ~ 33414958 (-)
LOC110496928 NA coding upstream 31978 33642926 ~ 33652838 (-)
LOC110496049 LOC106588217 coding upstream 46750 33657641 ~ 33674304 (-)
LOC110496050 csnk2b coding upstream 81444 33692392 ~ 33695909 (-)
LOC110496051 LOC106588219 coding upstream 86215 33697163 ~ 33746785 (-)
vps72a vps72 coding upstream 172986 33783934 ~ 33813301 (-)
G1540656 NA non-coding downstream 68755 33537970 ~ 33538194 (-)
G1540627 LOC106570065 non-coding downstream 92965 33508819 ~ 33513984 (-)
G1540648 NA non-coding downstream 98338 33508353 ~ 33508611 (-)
G1540640 NA non-coding downstream 108650 33498069 ~ 33498299 (-)
G1540637 NA non-coding downstream 112147 33494599 ~ 33494802 (-)
G1540713 NA non-coding upstream 9488 33620436 ~ 33621322 (-)
G1540633 NA non-coding upstream 12599 33623547 ~ 33623787 (-)
G1540717 NA non-coding upstream 16031 33626979 ~ 33627240 (-)
G1541007 NA non-coding upstream 45777 33656725 ~ 33656944 (-)
lrp12 lrp12 non-coding upstream 242939 33828341 ~ 33867431 (-)
G1540473 LOC106581475 other downstream 215197 33391339 ~ 33391752 (-)
G1540148 NA other downstream 670380 32899578 ~ 32936569 (-)
G1539348 NA other downstream 1044829 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1548164 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1891768 31714506 ~ 31715181 (-)
G1541318 NA other upstream 550979 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1124426 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1526689 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 1564358 35151351 ~ 35203984 (-)

Expression


Co-expression Network