LOC110496049 (LOC106588217)


Basic Information

Item Value
gene id LOC110496049
gene name LOC106588217
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33657641 ~ 33674304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952526.1
ATGGGAGGGAGGTTATAAATAGCGAGTTGGTGAAAAGCTGTTGTTTGAGCACATAGCTAACGGTCCATATAGGCAACACCTGCGAAACTTATTTTTTTCAACGATGAACAGAATTATTCTCAGCATTTTCGCAGTTGGCCTGTGTTTTTCAGTTGGCCAGGCTCTGCAGTGCTTCAACTGTGAGCTCTGCATCTTCAACGTGTTCCAGACCAAAGTCACCTGCGGCGCTGACGAGCAATGTTTCAAAGGTGTCGGAAAAGCAGCTCATGTTTTGGAAATCAAGACAAAAGGCTGCCTGAAAATGAACGACTGCAATAAGGTGTCTACAACCAAGTTCCCTTCCATTTCCAACGTCACAGTCTACAGCGTAAACAAGACCTGCTGTAGCTCGGACCTGTGTAACGCTGCCCCGGGCCAGCCCCGAATGAGAATCCTGCACCTGGCCCTCGCCACCACCTTCATGACCAAAGTCCTAGTGTAAGGGGGGGGGGCCCTCTGGCCTATACATATACAGAGGTTGATACGCATGTAGGTTGATGGTTCACACATGCCAACATTAGCAGCATACTGTCCATGTATAGAAGTCCTGCATTATCTTATATAATTTAGGCCAAGGAGGAAACATTTAGTGTATCATACCATCTAAACTTCAATTATTTCCACTAAAAAAATAGATTTGTCCTTGATGCCTGGAAATCTCTAAATTAGTTTTATTGCTCACTTGGAAATGCAGTCAGATTAGCTTTTCCCTGACCCTCATTCCGTTGCACTTACACACCACGAAAAACATTCAATTAAATGGAATGCTCACATACAATAGGCAACTTTTCATCAACATAATTGAGCAGATGCCTTCTGGCACTTTAGTAGGATGAAGCGCTTCAGTCATTATACTGTATAACAAATGAATGTGTATACTGACCGATTCATTCATCTTCATTAGGGAGCTCCGCTAACAAAGACAATATTTACCAACTTTGGTGTTGGTTATACCTGCTTGTACAGTAGGTGTCATGGGTGATGGACTGCATTCAGTGTTGTCCCAATTGCCACGCTCTATTATACAGTATCCCCGAGGCCAATGTATACATTAAAGTTTAAGTACATGCCATTTCAGTCAAATGTTAATTTCAGATGAATGCTACTTTCAAACCACTATTTCAATTTGATGTTCAATGTTAATGAGCCGATTATCCAGCCACTTGGTGTTGGGGAGCTCCACTGATCACCCAAATTACAATTAATAATGCAATTGCTCTATGACCATGTTTCCCCCATTGATGACCTAGACCAAAGGAGGGCCAGTTGCTAAACTAGTCTCTGTCCCTAGAAAGGGCAAACAATGTGGTTAATCTTGTTTTGACCGGGAATTGTATCTTTGTCCACCCTGCATATTCCTTTTTGCCTAAAGTAATACTTGTATTTGTATGGCAATATTAGAATGTAGGTGTAGATAATTAAATCAAGCTTTATAAATGCTATTTTTATTAATAGGATTTTCTAGGTTAATTAGAAATGTGTCAAACATACTTGTTTAGGAAGAACTGTGTACTAATTTGATGTTGTACTAACTAAATGGCTTGACTGGTTAGGTAAATATGAAACATTTTAAATTTTTGAAAACCTATTTTTAAACTGTAAATGTGTATACTGTACGGGATTGCTGGGTGACTGCAAAAATAAATGATTAAAGCTTCTACAAAATCCCTTA
>TU1763572
CAACACCTGCGAAACTTATTTTTTTCAACGATGAACAGAATTATTCTCAGCATTTTCGCAGTTGGCCTGTGTTTTTCAGTTGGCCAGGCTCTGCAGTGCTTCAACTGTGAGCTCTGCATCTTCAACGTGTTCCAGACCAAAGTCACCTGCGGCGCTGACGAGCAATGTTTCAAAGGTGTCGGAAAAGCAGCTCATGTTTTGGAAATCAAGACAAAAGGCTGCCTGAAAATGAACGACTGCAATAAGGTGTCTACAACCAAGTTCCCTTCCATTTCCAACGTCACAGTCTACAGCGTAAACAAGACCTGCTGTAGCTCGGACCTGTGTAACGCTGCCCCGGGCCAGCCCCGAATGAGAATCCTGCACCTGGCCCTCGCCACCACCTTCATGACCAAAGTCCTAGTGTAAGGGGGGGGGGCCCTCTGGCCTATACATATACAGAGGTTGATACGCATGTAGGTTGATGGTTCACACATGCCAACATTAGCAGCATACTGTCCATGTATAGAAGTCCTGCATTATCTTATATAATTTAGGCCAAGGAGGAAACATTTAGTGTATCATACCATCTAAACTTCAATTATTTCCACTAAAAAAATAGATTTGTCCTTGATGCCTGGAAATCTCTAAATTAGTTTTATTGCTCACTTGGAAATGCAGTCAGATTAGCTTTTCCCTGACCCTCATTCCGTTGCACTTACACACCACGAAAAACATTCAATTAAATGGAATGCTCACATACAATAGGCAACTTTTCATCAACATAATTGAGCAGATGCCTTCTGGCACTTTAGTAGGATGAAGCGCTTCAGTCATTATACTGTATAACAAATGAATGTGTATACTGACCGATTCATTCATCTTCATTAGGGAGCTCCGCTAACAAAGACAATATTTACCAACTTTGGTGTTGGTTATACCTGCTTGTACAGTAGGTGTCATGGGTGATGGACTGCATTCAGTGTTGTCCCAATTGCCACGCTCTATTATACAGTATCCCCGAGGCCAATGTATACATTAAAGTTTAAGTACATGCCATTTCAGTCAAATGTTAATTTCAGATGAATGCTACTTTCAAACCACTATTTCAATTTGATGTTCAATGTTAATGAGCCGATTATCCAGCCACTTGGTGTTGGGGAGCTCCACTGATCACCCAAATTACAATTAATAATGCAATTGCTCTATGACCATGTTTCCCCCATTGATGACCTAGACCAAAGGAGGGCCAGTTGCTAAACTAGTCTCTGTCCCTAGAAAGGGCAAACAATGTGGTTAATCTTGTTTTGACCGGGAATTGTATCTTTGTCCACCCTGCATATTCCTTTTTGCCTAAAGTAATACTTGTATTTGTATGGCAATATTAGAATGTAGGTGTAGATAATTAAATCAAGCTTTATAAATGCTATTTTTATTAATAGGATTTTCTAGGTTAATTAGAAATGTGTCAAACATACTTGTTTAGGAAGAACTGTGTACTAATTTGATGTTGTACTAACTAAATGGCTTGACTGGTTAGGTAAATATGAAACATTTTAAATTTTTGAAAACCTATTTTTAAACTGTAAATGTGTATACTGTACGGGATTGCTGGGTGACTGCAAAAATAAATGATTAAAGCTTCTACAAAATCCCTTACCACCTTAGTTCTTTGCTTTTGTCTATCGGCGTCATGACTTTTATCCACGCCCAAAC

Function

NR:

description
sperm acrosome membrane-associated protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952526.1 False 1711 mRNA 0.40 3 33657698 33674304
TU1763572 True 1695 TUCP 0.40 3 33657641 33674231

Neighbor

gene id symbol gene type direction distance location
LOC110496928 NA coding downstream 4860 33642926 ~ 33652838 (-)
LOC110496048 LOC106588215 coding downstream 46750 33602474 ~ 33610948 (-)
LOC110496046 lynx1 coding downstream 75727 33579796 ~ 33581971 (-)
LOC110496044 LOC106588213 coding downstream 83832 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding downstream 83991 33572014 ~ 33573707 (-)
LOC110496050 csnk2b coding upstream 18088 33692392 ~ 33695909 (-)
LOC110496051 LOC106588219 coding upstream 22859 33697163 ~ 33746785 (-)
vps72a vps72 coding upstream 109630 33783934 ~ 33813301 (-)
lrp12 lrp12 coding upstream 154037 33828341 ~ 33867431 (-)
gdf6b gdf6 coding upstream 504729 34179033 ~ 34183891 (-)
G1541007 NA non-coding downstream 754 33656725 ~ 33656944 (-)
G1540717 NA non-coding downstream 30458 33626979 ~ 33627240 (-)
G1540633 NA non-coding downstream 33911 33623547 ~ 33623787 (-)
G1540713 NA non-coding downstream 36376 33620436 ~ 33621322 (-)
G1540656 NA non-coding downstream 119504 33537970 ~ 33538194 (-)
G1541115 NA non-coding upstream 200946 33875250 ~ 33939003 (-)
G1541207 NA non-coding upstream 357193 34031497 ~ 34033219 (-)
G1541225 NA non-coding upstream 395663 34069967 ~ 34070184 (-)
G1541230 NA non-coding upstream 405109 34079413 ~ 34080134 (-)
G1540473 LOC106581475 other downstream 265946 33391339 ~ 33391752 (-)
G1540148 NA other downstream 721129 32899578 ~ 32936569 (-)
G1539348 NA other downstream 1095578 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1598913 32057280 ~ 32058819 (-)
G1541318 NA other upstream 487623 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1061070 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1463333 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 1501002 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 1672591 35346895 ~ 35351655 (-)

Expression


Co-expression Network