vps72a (vps72)


Basic Information

Item Value
gene id vps72a
gene name vps72
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33783934 ~ 33813301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571700.2
GATGGAATGGAAtttgtttatttatacatttctttttcaagcaaagtataacggagttgtactccagtctagtaggtggcggtaatgcaacatattggatgccaaccgccattAAATCTCACCGAAGAAGGTTCTGTAGTGCCGTCAAACCTGAAGAAGAAAAAGCATGTCGCACCATATATACGTCATTAGCTGCCTGCATAGTATTTTGTGGTAGCTAAGGTTAACTAGAACTTGATTGTTGTTAGCTTTCAACAAGCTAGCACGTTCCCTATTAATCAAGCTGAGCTAGATCAACATGAGTTTAGCATTTAGCAAAGAGCCCCGTAAAACCGCGGGGAGCCGCATGTCTAAGTTGTTAGATGCTGAAGAGGAAGATGAATTCTACAAGACCACATACGGCGGATTCAACGACGAATCAGGAGATGATGAGTACAGAGGGGAGCACTCAGACACAGAGGACGAGGTCGACAGTGACTTTGACATAGATGAGGGTGACGAGCCTGATAGTGACCAGGAGGATGATGCTCCTCGCAGGAAGAGTCGAGTTGTCACCAAAGCTTATAAGGAACCTCTGAAGGTGACCAAGCCTAAACCAAAGAGGCCTTCAGAGGAGCTGAAGAAGACGGAGAAAGCCAAAATGGAGAGGAGGGTGCCGCAGGAGTTTCAGGAGTTTGGAGAGACTCGGAAGTCTGTGCGCCAGTCGACCAGCGAGCATACGCGGAAGACCAACCTGCGACTGCAAGAAAGACAGGATGCCCCCCGACGGCGGAGGGGAGCCCACCACGACCGACCCCTgacccaggaagagttgctggcTGAGGCCAAAATAACTGCTGAGGTCAACCTCCGATCCCTAGAGAACTACGAACGTCTTGAGGCTGACAAGAAAAAACAGGTCCATAAGAAGCGCCGATTTGAGGGCCCCACCATCCGCTACCACTCTGTCCTCATGCCCCTGGTGCCTCACTCCGTCTTAAAAGAAGAAAATGTGGATGTGGAAGGgTTAGACCAGGACACACCACTGCTCGTTGCTCCTGTGGCAGCAAGTCCAATGCCTTCCCAGCAACCCTTGGGAGGTCTTTGCTCCCGCACTTACATCACCTTTAGTGACGAGGAGGCCTTTGAGGCTGCCTTCCCCCAGGCTGTGCGGACCGGCTCCCAACCCCCCACCCAGGAAGTCTGTCCTGTCACCCACAAGGCTGCATTATACAGAGACCCAGTTACAGACATCCCCTATGCCAACACACGAGCCTTTCGCATTATTCGCGAAGCCTACCGCAAATATGTGGCAGCTCATGGATTCCCCAACTCTGCTGGGGGTTTCTCTGTGGTTGATGCCTCAGGTTCCAGGAGTGCACGCCAGAAAATGGTCAAGCAGAGCACAGTTGCAAGGTAGAGGCTTATATTCTCTCATAAGTCTGTCCTCCTTTTATTTAGAGCCCCTCATCTGTTCAAAGATTTAAATCTACAGTCTGGGATTAATCTTTCAGCGAAATGGCAGCCCCAGTACTTGTTTTGGTGTACAGCTGAAGCATAGGGCTATGGAAATTCTTGTTTGTAAACATTGGAGTAATAGAATTTACATTTAGGATAGAACGGggctttccaaccctgttcctggagagctactgtcctgtaggtatgtGAATAAAATTTTCAATAAATTTCCTTTAACATCCTGGGCCCTTTTTTGCCTGGAACTAAGTAGGCACAAGTGTCAAATTTAAGTTGGTTTGCAATTTCGTCATGGAAAAACAGGCGCACTGGCATTTTACAGACCTAACACCAGGTTTGGCAATTTACCTGTGGGACCAGTGGCAATATTTAAGACTCACAAAAGTAGGTGTTAACGGTAACGCAGTTGATAATGGATGGATTGTGAGAAGCACAGCCGATCCAGTCATGACGCACAGTGCTCATGGAAGGAGAGATGTGCCTTTTGTGCCGGTAATTCTCATATTTAGAAACGTAAATGGACACTCGGTCCCCCCCCATTTCATTTAACTTGATTAAAAACTAAGCACAACCTACCCTCTCCTTAATAGCAGAATCTCATCAGTGTGTATTTTTATGCTGGTTCATTAGCCAAGTAGCCTATGAATAAAGGAGTTTTAAATGGT
>XM_021571702.2
GTCCCACCTACTAGGCTCACTTGcctcccattggaaacgacaggatGTGCTATATTTTAGTAGAACATATTTGATATCGACGTCATTAGCTGCTGCATGGTCTTTTGTGGTAGCTAACAACAAACAAGTTATATTTTTCAGCTAGCTAGCACGTTCCCTATTAATCTAGCTGCGCTAGATCAACATGAGTTTAGCATTTAGCAAAGAGCCCCGTAAAACGGCGGGGAACCGCATGTCTAAGTTGTTAGATGCTGAAGAAGAAGATGAATTCTACAAGACCACATACGGCGGATTCAACGACGAATCAGGAGATGATGAGTACAGAGGGGAGCACTCAGACACAGAGGACGAGGTCGACAGTGACTTTGACATAGATGAGGGTGACGAGCCTGATAGTGACCAGGAGGATGATGCTCCTCGCAGGAAGAGTCGAGTTGTCACCAAAGCTTATAAGGAACCTCTGAAGGTGACCAAGCCTAAACCAAAGAGGCCTTCAGAGGAGCTGAAGAAGACGGAGAAAGCCAAAATGGAGAGGAGGGTGCCGCAGGAGTTTCAGGAGTTTGGAGAGACTCGGAAGTCTGTGCGCCAGTCGACCAGCGAGCATACGCGGAAGACCAACCTGCGACTGCAAGAAAGACAGGATGCCCCCCGACGGCGGAGGGGAGCCCACCACGACCGACCCCTgacccaggaagagttgctggcTGAGGCCAAAATAACTGCTGAGGTCAACCTCCGATCCCTAGAGAACTACGAACGTCTTGAGGCTGACAAGAAAAAACAGGTCCATAAGAAGCGCCGATTTGAGGGCCCCACCATCCGCTACCACTCTGTCCTCATGCCCCTGGTGCCTCACTCCGTCTTAAAAGAAGAAAATGTGGATGTGGAAGGgTTAGACCAGGACACACCACTGCTCGTTGCTCCTGTGGCAGCAAGTCCAATGCCTTCCCAGCAACCCTTGGGAGGTCTTTGCTCCCGCACTTACATCACCTTTAGTGACGAGGAGGCCTTTGAGGCTGCCTTCCCCCAGGCTGTGCGGACCGGCTCCCAACCCCCCACCCAGGAAGTCTGTCCTGTCACCCACAAGGCTGCATTATACAGAGACCCAGTTACAGACATCCCCTATGCCAACACACGAGCCTTTCGCATTATTCGCGAAGCCTACCGCAAATATGTGGCAGCTCATGGATTCCCCAACTCTGCTGGGGGTTTCTCTGTGGTTGATGCCTCAGGTTCCAGGAGTGCACGCCAGAAAATGGTCAAGCAGAGCACAGTTGCAAGGTAGAGGCTTATATTCTCTCATAAGTCTGTCCTCCTTTTATTTAGAGCCCCTCATCTGTTCAAAGATTTAAATCTACAGTCTGGGATTAATCTTTCAGCGAAATGGCAGCCCCAGTACTTGTTTTGGTGTACAGCTGAAGCATAGGGCTATGGAAATTCTTGTTTGTAAACATTGGAGTAATAGAATTTACATTTAGGATAGAACGGggctttccaaccctgttcctggagagctactgtcctgtaggtatgtGAATAAAATTTTCAATAAATTTCCTTTAACATCCTGGGCCCTTTTTTGCCTGGAACTAAGTAGGCACAAGTGTCAAATTTAAGTTGGTTTGCAATTTCGTCATGGAAAAACAGGCGCACTGGCATTTTACAGACCTAACACCAGGTTTGGCAATTTACCTGTGGGACCAGTGGCAATATTTAAGACTCACAAAAGTAGGTGTTAACGGTAACGCAGTTGATAATGGATGGATTGTGAGAAGCACAGCCGATCCAGTCATGACGCACAGTGCTCATGGAAGGAGAGATGTGCCTTTTGTGCCGGTAATTCTCATATTTAGAAACGTAAATGGACACTCGGTCCCCCCCCATTTCATTTAACTTGATTAAAAACTAAGCACAACCTACCCTCTCCTTAATAGCAGAATCTCATCAGTGTGTATTTTTATGCTGGTTCATTAGCCAAGTAGCCTATGAATAAAGGAGTTTTAAATGGT

Function

symbol description
vps72 Enables histone binding activity. Involved in histone exchange. Located in nuclear speck. Part of protein-containing complex.

NR:

description
vacuolar protein sorting-associated protein 72 homolog isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11664 VPS72, TCFL1, YL1; vacuolar protein sorting-associated protein 72

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571700.2 False 2123 mRNA 0.48 6 33783934 33812408
XM_021571702.2 True 2009 mRNA 0.48 6 33783934 33813301

Neighbor

gene id symbol gene type direction distance location
LOC110496051 LOC106588219 coding downstream 37149 33697163 ~ 33746785 (-)
LOC110496050 csnk2b coding downstream 88025 33692392 ~ 33695909 (-)
LOC110496049 LOC106588217 coding downstream 109630 33657641 ~ 33674304 (-)
LOC110496928 NA coding downstream 131096 33642926 ~ 33652838 (-)
LOC110496048 LOC106588215 coding downstream 172986 33602474 ~ 33610948 (-)
lrp12 lrp12 coding upstream 15040 33828341 ~ 33867431 (-)
gdf6b gdf6 coding upstream 365732 34179033 ~ 34183891 (-)
LOC118940975 LOC106611608 coding upstream 422087 34235388 ~ 34237566 (-)
fbxl6 fbxl6 coding upstream 781930 34595231 ~ 34619367 (-)
nfatc1 LOC106588230 coding upstream 831815 34645116 ~ 34704821 (-)
G1541007 NA non-coding downstream 126990 33656725 ~ 33656944 (-)
G1540717 NA non-coding downstream 156694 33626979 ~ 33627240 (-)
G1540633 NA non-coding downstream 160147 33623547 ~ 33623787 (-)
G1540713 NA non-coding downstream 162612 33620436 ~ 33621322 (-)
G1540656 NA non-coding downstream 245740 33537970 ~ 33538194 (-)
G1541115 NA non-coding upstream 61949 33875250 ~ 33939003 (-)
G1541207 NA non-coding upstream 218196 34031497 ~ 34033219 (-)
G1541225 NA non-coding upstream 256666 34069967 ~ 34070184 (-)
G1541230 NA non-coding upstream 266112 34079413 ~ 34080134 (-)
G1540473 LOC106581475 other downstream 392182 33391339 ~ 33391752 (-)
G1540148 NA other downstream 847365 32899578 ~ 32936569 (-)
G1539348 NA other downstream 1221814 32561726 ~ 32562120 (-)
G1541318 NA other upstream 348626 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 922073 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1324336 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 1362005 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 1533594 35346895 ~ 35351655 (-)

Expression


Co-expression Network