lrp12 (lrp12)


Basic Information

Item Value
gene id lrp12
gene name lrp12
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33828341 ~ 33867431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571703.2
ACGAAGCAGAAGGGGACGATGATTATACTGATACCACCGATACCCCGGCTGTAACAACATTCAGCCGATTCATAGCTAGTTGTGGCTACAACGGGGTGTACTGTTACATACAGTTTAGGGCCCGGAGTTTTAGGGGGCTTGTGCTTTATAACATTTTCAATGATGGTGAAACTCTAAATAAACATTTTAGACACCACTAGAAGAAGACAGTGAAGTGGCATTTCAAGGATACCTCTAAGAAATATTTTCGTTCCGTTCTGCCATTGCTTTGGAAACTAGCTTACGTTAGCATGCTAGCTTGTAGCTAGCATTTGTGAGGTTGTGGAGGCGTAAACGAGAGAAGGGGGATTGCAAACGCTCTTTTGTTTTTTAGTTCACAGTTATCTTTcggttatattgtatttatttttctagTTTACATTCAGTGACATTTATGTGCGATTTCAATGTTGGTAATGAAACGTCATTTTGCTAACCCAGCTAGCTATCTTTGTTAACGATAGCTAACGTTTGCGTTGAacactaacattagctagctagctagctaacacaaagGGGAATTCTAGTAGCTAACGTGAGCTAGTTAACGGTGGAGTTGACTGTATTGCTAGCAATGCCTTTGTATTTTCCTCTGTTCTGGAACAATGCATAACACAAAGGTTAATATCATACTAGGATATGGGGTGGCACGTATATCTACACATGTAATGTGACGATGGATTAATATTGGCTAGGAATAGATAGATAGCTTACATTAGAGTAATCGTTAGCTAGCAGTTAGCTAAAAATTCAATGTCGCTATTTTGTTGTtatgctaactaactagccagccaGTTACAACGCACTGTTGCGTTCAACGGTTTGATTGCAGTATTTTGTCAAGACGGCTATATTATTGTTTCTTCATTGTCATCTAGCTAGCAAGATAACTTTATAAGATCTGTATTGGCTGTATAATTGATTGTCAATCACTGTCGGTTGTCTGGCCAGACAGGAATTGGCAAACGTTAGTTAAAATAACTTTAAATCCGTAGTAATCTCATTTGTTGCTTTTGTTTTTGTCACTACCTAAATATTTTTGGGACACCAAAGAAGAGAgcttgcctagttacatttttgGGAACATTGTAACAAGTAATAAAGTAGTAACAAATATAATTAGGCCTAGTTCATTAGCTATAATGGCCTACTACACTTTGAGCTCAAATGGGATTTCATCTTCATCGTGGATCTCTCTACACATGGTCCTCCTCATATTCACTGGAATTGCAGTTTGCTCCCAGCACAACGAGAACGTTTATGTATCGGGGATTTCTAATGcctgTGGAGATGTGGCAGAGCAGATCAGGGCATCCAGTGGAGTGATCACCAGCCCTGGCTGGCCCTTCCAGTACCCCTCCAGGATCAACTGCAGCTGGAACATCAGGGCTAACCCTGGGGAAATCATCACCATCAGTTTCCAGGACTTTGAGATCCAGAGCTCCCACCGTTGCGGCCTGGACTGGATCTCCATTAGCACCTACAAGAACCTGGACGGCTACCGGGCATGTGGCTCATCCATCCCAGCCCCTTACATTTCCTCCCAGGACCACGTGTGGATTAAGTTCCACTCAGACGACATCATGACTGGCAAGGGCTTCAGGCTGTCTTATATAACAGGAAAATCGGAGATGATCAGCTGCGACTTGGACCAGTTCCACTGCTCCAACGGAAAGTGCATCCCGGAGTCGTGGAAGTGCAACACCATGGACGAGTGTGGTGACAACTCTGATGAGGAGCTGTGCGTCCAGCCCAACCCCTCGGCAGCATTCTCCTTCCAGCCCTGTGCCTTCAACCAgTTTCCCTGCCTTTCCCGCTACACCCGCGTCTACACCTGCCTGCACGAGTCGCTCAAATGCGATGGCAGCATCGACTGCCAGGACCTTGGTGACGAGATCGACTGTGACGTGCCTACCTGCGGCGAGTGGCTGCGGAACTTCTACGGCACCTTCAGCTCACCCAACTACCCTGACTTCTACCCACCAGGCAGCAACTGCACCTGGCTTATCGACACAGGCGACCACCGCAAGGTGATCCTGCGTTTCATGGACTTCAAGCTAGACGGGACGGGCTATGGGGACTACGTCAAGGTGTACGACGGCTTGGAAGAGAACCCTCGCCGTCTACTCCGCGTCCTCACAGCCTTCGACTCCCGTGCCCCCATGGCCGTGGTCTCGTCCTCGGGCCAGCTGCGCGTTCACTTCTACGCTGACAAGATCAATGCGGCAAGGGGCTTCAATGTCACCTACCAGGTGGACGGTTTCTGTCTGCCCTGGGAGATCCCGTGTGGGGGCAACTGGGGCTGCTACACGGAGCAGCAGCGCTGCGACGGTTACTGGCACTGCCCCAATGGCCGCGACGAGGTCAACTGCAGCACCTGCCAGGAGGATGAGTTCCCCTGCTCCAGGAACGGCGCCTGCTACCCGCGCTCGGACCGCTGCAACTACCAGAACCGCTGCCCCAACGGCTCGGACGAGAAGAACTGCTTCTTCTGCCAGCCTGGCAACTTCCACTGCAAGAACAACCGCTGTGTGTTCGAGAGCTGGGTGTGCGACGCGCAGGACGATTGCGGCGACGGGAGCGACGAGGAGAGTTGTCCGGTCATCGTGCCCACACGGGTCATCACGGCGGCGGTTATAGGAAGTCTCATCTGTGGCCTGCTGCTGGTCATCGCTCTGGGCTGCACCTGCAAACTGTACTCCCTCCGGATGTTTGAGCGCAGGTCATTTGAGACCCAGCTGTCCAGAGTTGAGGCTGAGCTCCTGAGGAGGGAGGCTCCTCCGTCGTATGGCCAGCTGATCGCCCAGGGCCTTATACCCCCGGTGGAGGACTTCCCTGTCTGCTCCGGCAACCAGGCGTCTGTGTTGGAGAACCTGAGGTTGGCTGTTCGCTCCCAGTTGGGTTTCACCTCCATCCACCTGCCCACCTCCGGTCGCCACAGCAACATCTGGCAACGCCTCTTCAACTTCACACGCTCACGGCGCTCCGGCTCACTGGCCCTGGTGTCTGCTGACGGCGAGGACAACAGCACCACCAGCAGTAACGGTGGCTGCTCGGCCCACGAACCCGACAGGGCTGGACCCAACCGTGGGTTGCTGCCCCTCGACTCGGATGACACAGATACAGAGAGCGAGCGCCGGGATGTCCCTGGGGCCGTGGGGGGGCTTGTAGCCCCCCTCCCCGTAAAGACCCCTCCGGCAACTGCAGTGGAGGCCATCGTCTCGGTGTCGACAAACTCTACCACTCCCGCCCCTCTGCCCAGCCGTAGGGACAGCCACCGGGCTAGGGCCAGCCCGGCAGTGGTGGAGGCACACACCATGGAGACCCCAGGGGGAGAGGCAGCAGAGCCTCAGTGTACTGCGACCGGGAGGAGCCAGCTGAGCAGTGCCCTGAGCCGGGTCACCCGCAGCCTGCACTGGGTACGTTTCTCCCTGGGCCGCTCCGGAGGCTCCTCAGGTGGGGGAACCCAGAACCACAGCCCTCTGAGGCACCTAGAGCATGGAGCAGGGACCAGGGAGGACGAAGACGACGTGGAGCTGCTTATCCCTGTATCGGATGCTGCCTCGGACACTGACTCCACCAGCGAGACCTCCAGGCTCCTCAGCTTGGAGGTAGGTCTAGATCAGGCTGCCCCCCGCCTATCATCCCCAGCCTCTCTCAGGTCAGGCCGGGTGTCCCTGGGCCGGAACGGGCCCTGTGAACACTGTAGCATGGTTCACACCGCACAGATCCCAGACGCCTGTCTGGAGGCCACAGGCAAGACGGAGACCAATAGTGATGACGAGTTACTTCTGCTCTGCTAATAGCTCTAACCTAAATGACGTTACAGTTTGACTCAACTGACTGTCAAAATGGACCATCCCTGTAAAACTTTGCCATTTATTTTCTCTGGAAGAGGGCGGGGGTAAATGTAATTTTTATGCCCCGTTTTTGAAACGTCTGTAGTTCGTACTGTATTGCAGTCTTCTTGGTGTATTCATCAGATGGTACAATCTCTGCccaacctccccctcttcccctccaagTTCCAGTTCCAGACCTTTCCCTCGGGAGTTCCAACTCAGCCTGGGAACTGGGGAGTAGAACTACTGAACCTTGACTTTGTCTAGCCGAGCAGAAGTTGAATTGCCTCCATAGCAACAAGACACGTGCACCTGTGAGTGTGAGTTAGGCTTAGCTCAAGGCAAGCAGAGTGGGACTGAGGTGTATAGCAACGTAGCCACAGCACCTCTTCTTCTCACACTAATTTGGGATGAAGCAGAATAAACCAGCTGTCTTTTTATGTTCAAGAATAATGGTACGAGAGAGACCAAGTATAGAGTACGGACAATTAACAAACTCGAGCCTGTGAAAAGCTAGACGAGATTTAAAAATAGCTGTCAGCTTTATTTGATGTCAGTTGTTTCTTCGGTATAGGGAATGTGAGGGTGAGGGCTCTGAGTATCTGTGGCTTACCGTGTGATGGTATGTTTGTTTCATTTCAGTTCAATGGGAGGCTGTGTAAATCATTTTCTATTGAAAGGTACTGATGTGTTCTCATGCGTGATCTTAGCAAGAGCAGTTTATTTATGAAAAGTAAATTGCAGAGAACCTCTTTCTGAAGACGAAACGTTGTATAACATCCACAGATGTTTGttgtatttattgttttgttactGTTTTGGTAACCTCTGTGTTTTGGTACTGAGAATACTTGTGccactgtgtatttatttcattttcagtAGTTATTACTTGAGAAGATGCATGTCAAATTGTCTTGTGCTATTGTTTTGTTAAAGTGATACATTGAAAAACAAGTATATAAGCATAACTGTTTTCTGCATGTAGAAAATCAGAATAAAGCATTCATCCTGCTAACT
>TU1763660
GCTAGTTGTGGCTACAACGGGGTGTACTGTTACATACAGTTTAGGGCCCGGAGTTTTAGGGGGCTTGTGCTTTATAACATTTTCAATGATGGTGAAACTCTAAATAAACATTTTAGACACCACTAGAAGAAGACAGTGAAGTGGCATTTCAAGGATACCTCTAAGAAATATTTTCGTTCCGTTCTGCCATTGCTTTGGAAACTAGCTTACGTTAGCATGCTAGCTTGTAGCTAGCATTTGTGAGGTTGTGGAGGCGTAAACGAGAGAAGGGGGATTGCAAACGCTCTTTTGTTTTTTAGTTCACAGTTATCTTTcggttatattgtatttatttttctagTTTACATTCAGTGACATTTATGTGCGATTTCAATGTTGGTAATGAAACGTCATTTTGCTAACCCAGCTAGCTATCTTTGTTAACGATAGCTAACGTTTGCGTTGAacactaacattagctagctagctagctaacacaaagGGGAATTCTAGTAGCTAACGTGAGCTAGTTAACGGTGGAGTTGACTGTATTGCTAGCAATGCCTTTGTATTTTCCTCTGTTCTGGAACAATGCATAACACAAAGGTTAATATCATACTAGGATATGGGGTGGCACGTATATCTACACATGTAATGTGACGATGGATTAATATTGGCTAGGAATAGATAGATAGCTTACATTAGAGTAATCGTTAGCTAGCAGTTAGCTAAAAATTCAATGTCGCTATTTTGTTGTtatgctaactaactagccagccaGTTACAACGCACTGTTGCGTTCAACGGTTTGATTGCAGTATTTTGTCAAGACGGCTATATTATTGTTTCTTCATTGTCATCTAGCTAGCAAGATAACTTTATAAGATCTGTATTGGCTGTATAATTGATTGTCAATCACTGTCGGTTGTCTGGCCAGACAGGAATTGGCAAACGTTAGTTAAAATAACTTTAAATCCGTAGTAATCTCATTTGTTGCTTTTGTTTTTGTCACTACCTAAATATTTTTGGGACACCAAAGAAGAGAgcttgcctagttacatttttgGGAACATTGTAACAAGTAATAAAGTAGTAACAAATATAATTAGGCCTAGTTCATTAGCTATAATGGCCTACTACACTTTGAGCTCAAATGGGATTTCATCTTCATCGTGGATCTCTCTACACATGGTCCTCCTCATATTCACTGGAATTGCAGTTTGCTCCCAGCACAACGAGAACGTTTATGTATCGGGGATTTCTAATGCAGACTTTCAGAATAGCCTTTTTgcatgaacagaacagaacaaccagagttggactgcagattgaaggaaaagctgccaaaaagtcaagtgctcagcatatttgggaattccttcaagacttggaaaagcattccttgtgaagctggttgagagaatgcaaagctctcaaggcaaagggtggctactttgaagaatctaaaatatattttgatttgtttaacacatttgttGGTTActttatgattccatatgtgttatttcatagttttgatgtcttaactattattat

Function

symbol description
lrp12 Orthologous to human LRP12 (LDL receptor related protein 12).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571703.2 False 4901 mRNA 0.51 10 33828341 33867431
TU1763660 True 1536 lncRNA 0.37 3 33853887 33867357

Neighbor

gene id symbol gene type direction distance location
vps72a vps72 coding downstream 15040 33783934 ~ 33813301 (-)
LOC110496051 LOC106588219 coding downstream 81556 33697163 ~ 33746785 (-)
LOC110496050 csnk2b coding downstream 132432 33692392 ~ 33695909 (-)
LOC110496049 LOC106588217 coding downstream 154037 33657641 ~ 33674304 (-)
LOC110496928 NA coding downstream 175503 33642926 ~ 33652838 (-)
gdf6b gdf6 coding upstream 311602 34179033 ~ 34183891 (-)
LOC118940975 LOC106611608 coding upstream 367957 34235388 ~ 34237566 (-)
fbxl6 fbxl6 coding upstream 727800 34595231 ~ 34619367 (-)
nfatc1 LOC106588230 coding upstream 777685 34645116 ~ 34704821 (-)
atp9b atp9b coding upstream 870396 34735374 ~ 34794929 (-)
G1541007 NA non-coding downstream 171397 33656725 ~ 33656944 (-)
G1540717 NA non-coding downstream 201101 33626979 ~ 33627240 (-)
G1540633 NA non-coding downstream 204554 33623547 ~ 33623787 (-)
G1540713 NA non-coding downstream 207019 33620436 ~ 33621322 (-)
G1540656 NA non-coding downstream 290147 33537970 ~ 33538194 (-)
G1541115 NA non-coding upstream 7819 33875250 ~ 33939003 (-)
G1541207 NA non-coding upstream 164066 34031497 ~ 34033219 (-)
G1541225 NA non-coding upstream 202536 34069967 ~ 34070184 (-)
G1541230 NA non-coding upstream 211982 34079413 ~ 34080134 (-)
G1541248 NA non-coding upstream 250637 34118068 ~ 34118453 (-)
LOC110496048 LOC106588215 other downstream 217448 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 436589 33391339 ~ 33391752 (-)
G1540148 NA other downstream 891772 32899578 ~ 32936569 (-)
G1539348 NA other downstream 1266221 32561726 ~ 32562120 (-)
G1541318 NA other upstream 294496 34161927 ~ 34162458 (-)
G1542988 sast other upstream 1270206 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 1307875 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 1479464 35346895 ~ 35351655 (-)

Expression


Co-expression Network