LOC110496056 (dpy19l4)


Basic Information

Item Value
gene id LOC110496056
gene name dpy19l4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34080108 ~ 34088560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571705.2
GGTTCATCTCCTGATGTTTATTGTCCTGGTTTAGACCTAGCTATGCTGAAGACTTCTTCCCCGGGAGTTCTAACAGAAACATGTAGCTAGTTTCCACACTGCCATCTAGTGTGTAGGAGAAGGGTTGATGACAGTAGGGAAGAAATGGTTGGGTAAAGAAATCGCTTGAGGACTcggagcagctagctagctcgtTAGTCATTCGTGGAGTCAAGTTCGAAGACAAactcgttagctagctaagtattagcaggctagtagtagtagtagtagctctGTTAATGTCATGGAATTGCTGTGAATCTCTGGATATGGCAGAGTTGAGATGCCGGAAAACAGTGGtaaaggagggagaagaggaggaacacCAGCAATGTGAATCTGAACCTTGCTCAGAGAATTTTACAATGGACAAGGTTAGTCTGAAGGAGAAGTGTTCAGAGGACACAGATGGAGCTACCTGTGGGGttcaggagaaagagaaggaagatgaagaggagaagGATGAAGATAAAAAGGAGGAGGCAGACAGTCAGAAGCCCTCTCCTGTCAAAAGAAACCGGAGCGCCTGCAGATCGGTTATGCTTCAGAGTCTAGTGAAGCTGTTCTTCGGATGCCTGGCAGCAGTTACATGTGGCATGATGTATGCAGTGTATCTCTACACCTACCACGAGAGGAAGTTCTGGTTTTCTAGCAGACAGGAGCTGGAACGGGAAATCACCTTCCAGGGTGGCAGTGgactctactattactactacaaaCACATGTTGACAGCACCCTCCTTTGAAAGAGGGATATACGAGCTGATGAGAGACAACAGGACTGTGTCTGGTCAGACCATCAACGCAGTGGAACGCCTGTCTCTGTACCCAGAGCTTATTACTAGCCTGCTCTATAGAATCACAGGAAGCCAGGATGTAATAGAGCCAGTATACTTCTACATCGGTGTGGTGTTTGGCCTCCAGGCTGTCTACGTCACTGCCCTCTTCGTGTCCAGCTGGGTGATGAGTGGCACGTGCGTGGCTGGCATACTGGCTGTGGCCTGGTATGTTATCAACCGACCAGACACAACCAAAGTGGACTATGCCATTCCACTGCGGGACAACTGGGCCTTGCCTTACTTCTCTTGCCAAGTTGCAGCCTTAACAGGATTCCTGAGTAATAACATTAACTCAGCCTCAGAGATGTTCTGTTACCTCCTGATGAGTGCCACCACCTTCACCTTCATCCTGGTGTGGGAGCACAGCCACTACGTGCTCTTCATCCAGGGCCTGGCCCTGTTCCTGCTCGACTCCTTTGACCTGGTGCCGTCCCGCAAGATGGCTGACATTCACAAGGTGTACCTGAGCTCTCTCTTCCTGGCCTACGTCCTCCAATTCCAGAACCCAGCCCTGCTCAGCTCTCCTTTGCTCAGCCTCCTCATCAGCTCAGTGCTAGCGAGGTACTTCCAGCAAAACATGAAGATGGGCCCCCTAGTGGCCAGACTGATGAAGCTCTTTCTGCATTTCTACCTTTGCTTCACCACCGGGATCACCTTCAGCTATGTGGCCAAGCGACTAATGCCAGTCAGAGAGAGTGATTTCATTTTGAAATTTCTTGAAGTGAAATTCGGACTCAACACTACAACAGACTTTGTGACTAACCGGCTCCTGTGTCAAGAATGCTTCCAGACCCCCAGTCAGGACTTTTTCCTGCGGCTGACCCAAGCATCAGTCCTGCCTTTTTACCTACTGGTCCTCCTTATCTGTCTCATATCAACACTGCAGACCATCTACAGGAGGCTCAGTGGTGAGCCAATGAAAACGAACCTCAGACTCGAAGATGGACGAATAGGAGAGCAACCCGAGGTCATCTACCACGTTTTCCACACAATGCTGTTCGGGGCTCTGGCTATGGTCTTTGAGGGGATGAAGTATTTGTGGACCCCATACGTCTGCATGTTCACAGCGTTTGGCGTGTGTTCTCCAGAGCTCTGGGTGACTTTGTTCAGGTGGCTGAGGCTGAAGTCCATCCACCCTGTGGTACTGGCCTTGATATTGAGCACAGCAGTTCCAACTATCATTGGATTCAGTTTATGGAGAGAGTACTTTCCCCGTGTCATAGCAGAACTATCAGAGCTGCAGGAATTCTATGACCCAGACACAGTCGAGCTGATGAACTGGATAAAgACCCATGCCCCGATGGCAGCAGTGTTTGCGGGCAGCCCACAGCTGTTGGGTTCGGTGAAGCTGTGCTCAGGTTGGACTGTGACCAGTCTGCCTCTCTACTCAGACATTGACCTGCTGAGGAGGAGTGAGGATACATACCAGGTGTATGCAATGAGGTCAGCGGAAGATGTCTACAAGATTCTGTCTTTGCACAAGACGAGCTACGTGATTATCGAAGAGTCGCTGTGCAACGAGTTGAGTCATACCAAGGGCTGCAGGATCAAAGACCTGCTGGATATCGCCAACAGCCATGTGGTGTATGACAAAGGCGAGATGTACTCTTTCTCCAAACACGGGCGATTCTGTCATGAGATAAAGATGAACTACTCGCCCTACACAAACTACTTCTCAAGGGTTTTCTGGAACAGGTCCTATCACGTCTACAAAGTCAACTCTGTCATCTCCTTCCAGTACTGAAGACAGCTCAGCTTCAGCCTAACTACTGAGACAAGACGTTCTTCTGTCTCTGCAGTGTCTGTTACCATAGTTGGATGCAATACAACCCCTTCGCAGTTGGTACCCGTAAAATCCGTGGAAGCGTGTTGATTGAATATTCAGTCCCCTTGACATTCTACTGGGAGTGTAAATTGTCTTGATATTCTGCACAGTAACAAATCACACATGTAACAGAGTGAGATCCATGATGAGAACATTCAGTTGGTCCCCCAATTATTGCATGTCAGATAAGTGGTCAAACTCTTAATGAATAGTTAGGGGCGAAGTTCACAATGCCATGTGAGTCATAGTACTGTATTTTGTTTTCCAAAACACTAATTACTGTGATGTCTTGAGTGAAAGTAAAGCACACATGCATGTAAGGGAGACAGGTCCACTATTCTCTTGTCATTATTTACCTCTTAATATTGACGCACATGCAGTGCATATGTGTTTTAACAGTTGAAGTTTGCTGCTTTGCGTCTTAGGATGTATTTGCCTGCACACCCCTGTTTCTTCTGTATGATGTAAAAGGGAAGGGGCGGATAAGGTTGACCAGAGCTCACTCTTAAGCCTTTTGGCAAGGTTCTCCAATTTGGCCCGGGGGTGGTtgtatttggccccccaagttttctgagagagagtgtgtgtgtgtgtgtttgtttgtttgtttgttgttggacataaaagactgtcaaaacaccaggaaatcagctccaagtgattttaactTATGAAAGAGAGAGCCACGTGATCGTAGATGCAGGGTTTGAAATGAttttgttttagtcaaacatatctgggcttcttgcggtcaatttgcagacTAGAAAGTagaaattatttgtaattatgttctggcccactgaccatccgctcaataaATAATCGGCCAGCGGATTAATCTAGATGATGATCCCTGCCTTATGGGGAGTGAAGGCAGGCTCTGAGGCTATCCATTTAGGTTGCATTTCATTTTAAAAACCTATTCTTCTGGATGCCTtagtctttttttatttatttaacctttatttaactaggcaagtcagtttaagaacaaatgattatttacaatgacggcataccccggacggcgctgggccaattgtgcgctgccctatgggactcccaatcactgccggttgtgatacagcccaggatcgaaccagggtctgtagtgccttaaaccgctgcgccactcagaagCCTGAATCTTGACATAAAATGTTCACTCAAATGAACAATTATAGGCCACATAGCTAAAGCAGTGGCATTTCACATGCTATATTGAGCTACCGTCAACTTGGATCTTTTACTGGTTGTCACAGTATGCCGGTCTAACTTGCTCTGTCTGGAAATTGTAAAGAAAGTGGATGAATTTGTAAATGCAAAGAAACTGAAGTCGATCTACGATGTGTTTTAATTGTATTTGTCTCAAATGTTTTGCTAGTGCTGAACTGCAATGACTTTTGCGTAGCTGCTATCTGCTGTTTTTCTCCTGAAATGTCAATGCAAAGAATATATGCTCTTGGAGCGGTCTCGTTTACCA

Function

symbol description
dpy19l4 Predicted to enable mannosyltransferase activity. Predicted to be involved in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan. Predicted to be integral component of membrane. Predicted to be active in nuclear inner membrane.

NR:

description
probable C-mannosyltransferase DPY19L4

GO: NA

KEGG:

id description
K24553 DPY19L; C-mannosyltransferase DPY19L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571705.2 True 4191 mRNA 0.47 20 34080108 34088560

Neighbor

gene id symbol gene type direction distance location
LOC110496055 LOC106588221 coding upstream 20148 33938682 ~ 34059960 (+)
LOC110496043 LOC106588212 coding upstream 542539 33535229 ~ 33537569 (+)
LOC100136630 LOC106570065 coding upstream 567682 33508836 ~ 33512426 (+)
ints8 ints8 coding downstream 3687 34092247 ~ 34116282 (+)
LOC110496058 LOC106588349 coding downstream 38632 34127192 ~ 34133734 (+)
trhrb LOC106588145 coding downstream 172752 34261312 ~ 34265470 (+)
LOC110496061 LOC106588154 coding downstream 208624 34297184 ~ 34300652 (+)
pleca LOC100194709 coding downstream 287536 34376096 ~ 34579125 (+)
G1540994 NA non-coding upstream 4527 34075128 ~ 34075581 (+)
G1540976 NA non-coding upstream 34428 34043133 ~ 34045680 (+)
G1540967 NA non-coding upstream 48900 34030868 ~ 34031208 (+)
G1540886 NA non-coding upstream 171480 33908231 ~ 33908628 (+)
G1540851 NA non-coding upstream 216956 33862239 ~ 33863152 (+)
G1541243 NA non-coding downstream 32156 34120716 ~ 34120977 (+)
G1541268 NA non-coding downstream 37110 34125670 ~ 34125991 (+)
G1541270 NA non-coding downstream 37666 34126226 ~ 34126432 (+)
G1541278 NA non-coding downstream 45562 34134122 ~ 34134806 (+)
G1540996 NA other upstream 1034 34078718 ~ 34079074 (+)
G1540551 NA other upstream 588987 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 621684 33455560 ~ 33458964 (+)
G1539671 LOC106582599 other upstream 1020251 33058990 ~ 33059857 (+)
mbpa LOC106588233 other downstream 794954 34883492 ~ 34898413 (+)
G1541989 NA other downstream 1194043 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 1286684 35373871 ~ 35386463 (+)
G1542052 LOC106588245 other downstream 1313277 35400723 ~ 35481348 (+)

Expression


Co-expression Network