LOC110496058 (LOC106588349)


Basic Information

Item Value
gene id LOC110496058
gene name LOC106588349
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34127192 ~ 34133734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951387.1
TAATTCTAAGAAAGTGCCATATGGTCTTGAACTCGGTCAAAAACCCTGCAGTATGATGTGCGATAatgagtaggcctacattcaggaGCTTTCTGAAAGCGACCACGCTGAGATTGCTCCGCGAGCGGCCGCTTCTGTGTGCAGCTGGCCTGGTGATCGCGACGGGTTCGGCAGTCTACTTTTATAACAGATATTACGGCGTCGGTGAGGATGAACACGCCACCGTGGAGAACGTGGACCGTGTTGTCACGGTTGAAGAGGATCATGATCCCACCCTGGACCAGGAGGACCCAGTTCTTGTTCAGTTTGTGGATGGGGAGGTTGGGCAGCGTCCCTGTCTGGCTTTAGTCCCTTGGTCTGGACCTCTGTGGGTTCCCAGCTCTCTGACTTATTACCTTACCCTTGCTGGGAGGATGATAGTGAGAGAGCTGGCAGTGTTAAACACACAGATTTTCATGATGGAGCAGCCTATTTCCATCTGTTTCACTCCTGTAGGGAGGTTGGTGTGGGAGGAACTgtcttctcaaactgaacaggtAGCCATTCATATGCAGTATGTGGATGAGGAGGTTCAGCAGCAGCCCGATCTGACTTTAATCTCTTGGTCTGGACCTCAGTGGGTTTCAAGTGCCCCTGTCAAACTGCAGCCAACGTATTACCTTACCCATGCTGGGAACACGCTGGTGAGAGAGctgtcagtattaaatacacagATTTTCATGATGGGGCAGCCGATTTCCATCTGTTTCACTCCTGTAGGGAGGTTGGTGTGGGAGGAACTgacttctcaaactgaacagCCAAATAGTGAAGACTCTGGTTTTCCCTTTGAGAAGATGCAGCTGGTTGGGAACTGGGGTTCGTTTCATTTCCATACCTGGATAATCTGTTATGGACGAGTGCAGCAAAACGAAGAGGACATGCATCACCTGTGCATTGTGAGGGGAGTGGAGAAACAGCTGTGGTGGAGCAGAGTCATTCAGGAAAAAATCCTGGACCCATGGGGTAATGTCCAGGTGGTCCTCACCAACGAGGAGGTGACTGGTATTAAGTACCTTGGTAGAAGGATCCATGGACTCAGGTCTTGCCTCGTCAAGAGGAGGTCAGAGTTCACCTATTATGAGGACGCCCAGCAGGTGGATATCTCCACCACAGTGGAGGGGTTCcaggagaggggggatgacaTGATGACGTATCAGTTCTCTACCTCTGACATTATCACCACCCCTCACGAGCCGTCCTCTGGCTCCTCTCAGCAGTTCCCCCAGGattctccacctccccctccgcCACCCCCGTTCCCTTCCCCTCCACCTTACCACTTCACCCAGGACCAGACCCCTGACAGCACTCCTCAGGAGTTTGTGGAGGAGCAACATAATGTTGCAGATGTGCCCCAGCTGTGGAGTTACTTTAGAAACCAAGGGACAAGCAACTTCTCTCTGAGGCTGGCCGGTATCCGACGTGCTATGGAGGCTCTGACATCCTCAGACAGTACCTCCCTTAATTACCTCACCCACGCTGGGAGGATGGTGTTGAGTGGACTGTCTGAGCTCAACCAGCAGATCAACCACATCAATTTCACAGATGTATTTTATGAATTCATTCTACTGAGCCTTCTTGAAGGAAAAACATCTCTTCCAACATCTAGGCCTGGTACCTTCTTTTATCTGCTCATGGAAGTGATGATGAGGATTCGCCCTCCTGGAGGAGCCTGGACAGAGTCTGCTGGGAACTTCTACCTCCTCATTAAgGATCAGATGAAGGCGTGGTTGGACTCCATCTTCAACCTCGATGAGTCCATCTATGAAAGCCCACAGAGGCTCTCTTGGAAGGTGATGGAGAATCTAGAAATGCCGGTTGACTTTCTCCTGTCCAGCCTGGATTAAGGGTCCCAAACTGAGCTGAGGATCCCAAACACAAAATAAAGTATTTTGCATTTAAACATTATCTG
>TU1763845
gagtaggcctacattcaggaGCTTTCTGAAAGCGACCACGCTGAGATTGCTCCGCGAGCGGCCGCTTCTGTGTGCAGCTGGCCTGGTGATCGCGACGGGTTCGGCAGTCTACTTTTATAACAGATATTACGGCGTCGGTGAGGATGAACACGCCACCGTGGAGAACGTGGACCGTGTTGTCACGGTTGAAGAGGATCATGATCCC
>TU1763847
CTGACTTATTACCTTACCCTTGCTGGGAGGATGATAGTGAGAGAGCTGGCAGTGTTAAACACACAGATTTTCATGATGGAGCAGCCTATTTCCATCTGTTTCACTCCTGTAGGGAGGTTGGTGTGGGAGGAACTgtcttctcaaactgaacagTATGTGGATGAGGAGGTTCAGCAGCAGCCCGATCTGACTTTAATCTCTTGGTCTGGACCTCAGTGGGTTTCAAGTGCCCCTGTCAAACTGCAGCCAACGTATTACCTTACCCATGCTGGGAACACGCTGGTGAGAGAGctgtcagtattaaatacacagATTTTCATGATGGGGCAGCCGATTTCCATCTGTTTCACTCCTGTAGGGAGGTTGGTGTGGGAGGAACTgacttctcaaactgaacagCCAAATAGTGAAGACTCTGGTTTTCCCTTTGAGAAGATGCAGCTGGTTGGGAACTGGG
>TU1763850
GGGTAATGTCCAGGTGGTCCTCACCAACGAGGAGGTGACTGGTATTAAGTACCTTGGTAGAAGGATCCATGGACTCAGGTCTTGCCTCGTCAAGAGGAGGTCAGAGTTCACCTATTATGAGGACGCCCAGCAGGTGGATATCTCCACCACAGTGGAGGGGTTCcaggagaggggggatgacaTGATGACGTATCAGTTCTCTACCTCTGACATTATCACCACCCCTCACGAGCCGTCCTCTGGCTCCTCTCAGCAGTTCCCCCAGGattctccacctccccctccgcCACCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951387.1 False 1954 mRNA 0.51 19 34127192 34133734
TU1763845 False 205 lncRNA 0.56 2 34127259 34127844
TU1763847 False 457 TUCP 0.48 6 34128341 34129659
TU1763850 True 293 lncRNA 0.56 3 34130178 34130681

Neighbor

gene id symbol gene type direction distance location
ints8 ints8 coding upstream 10910 34092247 ~ 34116282 (+)
LOC110496056 dpy19l4 coding upstream 38632 34080108 ~ 34088560 (+)
LOC110496055 LOC106588221 coding upstream 67232 33938682 ~ 34059960 (+)
LOC110496043 LOC106588212 coding upstream 589623 33535229 ~ 33537569 (+)
LOC118941241 NA coding upstream 615233 33511830 ~ 33511959 (+)
trhrb LOC106588145 coding downstream 127578 34261312 ~ 34265470 (+)
LOC110496061 LOC106588154 coding downstream 163450 34297184 ~ 34300652 (+)
pleca LOC100194709 coding downstream 242362 34376096 ~ 34579125 (+)
LOC110496064 NA coding downstream 340813 34474547 ~ 34482054 (+)
LOC110496065 LOC106588226 coding downstream 484820 34618554 ~ 34624236 (+)
G1541270 NA non-coding upstream 760 34126226 ~ 34126432 (+)
G1541268 NA non-coding upstream 1201 34125670 ~ 34125991 (+)
G1541243 NA non-coding upstream 6215 34120716 ~ 34120977 (+)
G1540994 NA non-coding upstream 51611 34075128 ~ 34075581 (+)
G1540976 NA non-coding upstream 81512 34043133 ~ 34045680 (+)
G1541278 NA non-coding downstream 388 34134122 ~ 34134806 (+)
G1541300 NA non-coding downstream 13864 34147598 ~ 34147846 (+)
G1541304 NA non-coding downstream 17699 34151433 ~ 34152312 (+)
G1541344 NA non-coding downstream 44556 34178290 ~ 34178506 (+)
G1541404 NA non-coding downstream 83548 34217282 ~ 34290422 (+)
G1540996 NA other upstream 48118 34078718 ~ 34079074 (+)
G1540551 NA other upstream 636071 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 668768 33455560 ~ 33458964 (+)
G1539671 LOC106582599 other upstream 1067335 33058990 ~ 33059857 (+)
mbpa LOC106588233 other downstream 749780 34883492 ~ 34898413 (+)
G1541989 NA other downstream 1148869 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 1241510 35373871 ~ 35386463 (+)
G1542052 LOC106588245 other downstream 1268103 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 1345101 35478835 ~ 35502933 (+)

Expression


Co-expression Network