gdf6b (gdf6)


Basic Information

Item Value
gene id gdf6b
gene name gdf6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34179033 ~ 34183891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571709.2
CTTTGTATTTGACCATGTCTTTACCAGGATAGTAAACTAGGACATGATGCTTTGATTGCTTTCCTACCATGATATAAGTTAGAACCCGCCGGTCCACTATTAGCAGCGAGTGAATTCCAAGCTGGGCGTGTTTTTGCGCTCCTTTTAGCCCAGTTGACGATCCCGTGTGGAGCACACTGCAAAGTCGGCACTTGTTGAATGTGGATGAAGTCCAGCTTCGATAGTGCCCGTGGTCCCTTCGCCACATACTAAGCATCTACTCTGACACATATTTGACATTTCGCTGACGTTTTTTTTATCAATCTATTTATTCTTGAAAATTATGGATTTCTATCAAATAACCACATTTTACGCGGTCCTCACATGTGTATGGGATTTACCATGTTTTCAATCATTTACTGTTTTCCTTCCGTCTGCCTCAAAGAGCAGCAAGGTCCCGAAAGTATTTGATGGACGAGAGGCAAAATATTTCAAAGATATctactcatcatcatcatcatcatcatcaaatgAGCGGTATTACAAGAGTGGGTTCAAAGATTCAGTTGAACCACACGACTACATGCTTTCAATTTACAAGACTTTCTCTACAGCCGAAAAATTGGGGCTGAACGCAAGTTTCTTTCGGTCGTCAAAAGCAGCTAACACTATAGCAAGTTTTGTGGACATCGGACAAGATGACCTCCCACTCTCCCCTTTGCGAAGACAGCAGTATCTGTTTGACGTCTCAACCCTCTCAGACAGAGCCGAGGTGCTGGGGGCTGAGTTGAGGATATACACCAAAGTGTCTGGGAATTTCAGGATGTCGGAAATGGAGCCAGTGGACATTCAGCTACTCTCCTGCCGCTCTCAGCAGCTGCTGGATTCCAGAACGTTGGATCTTCAGGAGTCCCATCGGCCCAGATGGGAGGTGCTGGATGTGTGGGAAATATTTAAGGACAGGGATCACCTCACACAGGGGAGCCAGTTCTGTCTGGAGGTCAAGGCCATGCTGGACAACACTGAGAGGGAGCTTGACTTGCATCATCTGGGCTTTCACAGAAATGGTCGCTCACAACAAAAGAAGGCCATTTTAGTGGTGTTCACCAGGTCCAAGAAGAGACAGACCCTTTTcagtgaaaggagagaaggaaggacatTGATTGGCCATGGGGaaaaggggaaagagaggggccCTCGTTCTAATTCCAAAGCCAGCCGGAGACGCAGGACGGCGCTATTGAAGAATCGCCATGGGAAGAGGCATGGCAAAAAGTCAAAATCGAGATGCAGCAAGAAGCCGTTGCATGTGAACTTCAGAGAGCTGGGCTGGGACGATTGGATCATCGCTCCTCTGGATTACGAGGCGTACCACTGTGAGGGCGTGTGTGACTTTCCTCTGAGGTCACATCTAGAGCCCACAAACCATGCCATCATACAGACCCTTATGAATTCTATGAACCCCAGCAACATGCCTCCTAGCTGCTGTGCCCCGTCCAAACTCAGCCCTATCAGTATTCTCTACATCGACTCAGGAAATAATGTGGTGTATAAGCAGTATGAGGATATGGTGGTAGAGTCGTGTGGTTGTAGGTAATGCCTTTTTGGAAAGGCTGTGTTTTGAGTGGGAATGAAATGTGATCATCAGGGCCTATCTGGTGTGAAGGCAATACTTTAAGCTACCTGatgggctgcatcccaaatggcacccttttcactatgtagtgcactacttttgatctatagggctctggtcaaaagtagagcactatataggcaatagggtgtcatttgggaccagAGCGCCTTGTCTAATATTGTAAAATGGTGTGGTGGGATTAATAATCACCTGCCCCAAACTAAGCCATGTTCATTTCTTCTTCCCTGGTCTGGTTCTCAGTTTAAGACTGGTAAGCGAGGCTACTTCTTCCCTGAACCCTGTTACGTGTTTTTATTTACCAGTTAACGGGAGGGACACTTCTAAACACCCAGCAAATGACTGAAAATCAAAATGTGTCATATCAATGTAAAAACATAATTCAAACAGCAGAAGTCCTTTCATAGCTCCTTGGCTTGGCCTTTGACTCGAGAGGATGCTTGAGTGCTACTCAGAATGTAAAGCCTTATTGAGTTGCAACATCTGTGTAATTCAAGTGCACTCCCACCCAAAATGCCCCCAGGCTTAGACTACTTAGCCAAGGGctcagtctgtgttccaaatggcaccctattccctacatagctaCATAGTGTAGTGCACACAATATATAGGGAAttaggtgccattttggacgtagTCATGTTGTGGTTAGATACAAGGTGATAAAATAATGCCCATGAGCCTTTTCCTGTAATGCACTGAGATTCATATTACCATATGTAAGCACTTGACATGGAAATTATAATTTATGTTCTATCAATAAGttattatatttttgttgttggagTTTGCTGTCGGGGTTTAATACCTATCATGTTTTGGTCCTGTACAAGATTGTATTTCAGGTCCCATAAATGAACAACAACTTTGAAGGCTTAACAAAGCCTTCATGAACCATGTGTAGATGGTTCAGAACGTATGTATTAATAAGAAAATTCATACTATTTCAAAGGTAACGTACAGTATGGGGTTTGTAAAGCATCTATGAAGACCTTATAAATTATGGTTTCAGAAAGTCTTAAAAGTTGCTGTTTGTTTATATTTCAAAACTTTAAAGATTGTATTTTGTAAAACTTCTGGTGTAGATTTGAACAAGCAAAGAATGAGGGAGCCTTAACTGTTAAAACAGGAAATTATTACCAGTCAGAAAAAAAGACCCCTGTGTTTTTGCAATGATATACTGCTCCATAGTTTATAGACGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTCATCTTTGTTGGATTTTGTATTTTACTTTCTATTTTCTACTGGAACTCAAAACCAATTTATTTAATATTCTCTAACAAATTTAAAACAGATttacaaatgttttttatttcccttaactaggcaactcagttaagaacaaattcttattttcaatgacaaccaAATTATATATTCCTTTTTTTACCTGTTAAGGTTACATGTTTTATATAATAGTATATTAAATTATCTTTTTTGTATTATGTATTTTGATTATATTTTCCAAAATATGTGTATCATTGCGTTACTCGATTGTGCAGTGTCACTATAGTCGAGTGGCGGTCGGtgacgtttaagatgagggaggacgattatTTTCTTTATGAGCATGgctttatttctattacagcatattggatgactgttattcatatttcattcacccagctcaatgtaacatcaacaGTTTTAGGCTATGATACTTACATTTTTcatgtacccatcatgaggttgctacaatttagcctatgaatgaaattTACCACATAGATGCACAGGTCGATTAATCAaggagacagacagtgacacattcagtaCCACCTTgaacactcttgcctgcatctagctgatcaaGGTTGTGATCATTAGTCcgacagttgcaaacaagagtttctattggacaaactCAGGAATGTTTATCCTcatttcgttccgtttgcttaagtttcaaaaatgtttttcaacagaatctgcggaatgaatacacccttgATCACACGCAAACAAAGTTCACTTTCGTAAcacccacatacaaacagcagGATAATTTTGCTCAATGTAAAATTCCTTCATGTATCTGTGCGCTCTCCTCTTCTCGCATTTTCCTTTCGCTTGTAGACTTCCATGCACAAAAcgtcagctgtctgtgaccaagcaaaaaaaaacaagccaaaccttcatatcataaccgccaaccgctacacacaaactatctacaTCGCCGAAGCAACTAGAACTAAcacattagtaaacccgctacaatcatgcagtacagtgtacagtcagcaagcagtttagtgGTTACACTGGCGAGCCCCAGTTGCAATAGATTTATAAaatcaaaagcttaccttgacttggaagagttccagtgttggatagccatagccagccaGCAATCATAgcctccctctctgtttgagtaggctaaactagctagctgcatttgctagctaagtgaaagtaaaaacaaacaaaaaatatatctCTTGCTTCTTCATTTTGGTGTTCATTTTGGTGTTAGTgtctgtgggacccattttcaatgtttactaaaaGAAAAGTAATACAATTAGTTATTTCttcaacctgagactcattggccttgactcattttctgtgaagaacatgtaaaataacacatgttcattgagtgcacactgtgcacccccttacacatttatattacatatgtggtgtttgGGTCTACTGGACCCGAGGGTAATAAAagtgtggaaaagtgtgtgtgcagGTGAA
>XR_005037435.1
CTTTGTATTTGACCATGTCTTTACCAGGATAGTAAACTAGGACATGATGCTTTGATTGCTTTCCTACCATGATATAAGTTAGAACCCGCCGGTCCACTATTAGCAGCGAGTGAATTCCAAGCTGGGCGTGTTTTTGCGCTCCTTTTAGCCCAGTTGACGATCCCGTGTGGAGCACACTGCAAAGTCGGCACTTGTTGAATGTGGATGAAGTCCAGCTTCGATAGTGCCCGTGGTCCCTTCGCCACATACTAAGCATCTACTCTGACACATATTTGACATTTCGCTGACGTTTTTTTTATCAATCTATTTATTCTTGAAAATTATGGATTTCTATCAAATAACCACATTTTACGCGGTCCTCACATGTGTATGGGATTTACCATGTTTTCAATCATTTACTGTTTTCCTTCCGTCTGCCTCAAAGAGCAGCAAGGTCCCGAAAGTATTTGATGGACGAGAGGCAAAATATTTCAAAGATATctactcatcatcatcatcatcatcatcaaatgAGCGGTATTACAAGAGTGGGTTCAAAGATTCAGTTGAACCACACGACTACATGCTTTCAATTTACAAGACTTTCTCTACAGCCGAAAAATTGGGGCTGAACGCAAGTTTCTTTCGGTCGTCAAAAGCAGCTAACACTATAGCAAGTTTTGTGGACATCGGACAAGATGACCTCCCACTCTCCCCTTTGCGAAGACAGCAGTATCTGTTTGACGTCTCAACCCTCTCAGACAGAGCCGAGGTGCTGGGGGCTGAGTTGAGGATATACACCAAAGTGTCTGGGAATTTCAGGATGTCGGAAATGGAGCCAGTGGACATTCAGCTACTCTCCTGCCGCTCTCAGCAGCTGCTGGATTCCAGAACGTTGGATCTTCAGGAGTCCCATCGGCCCAGATGGGAGGTGCTGGATGTGTGGGAAATATTTAAGGACAGGGATCACCTCACACAGGGGAGCCAGTTCTGTCTGGAGGTCAAGGCCATGCTGGACAACACTGAGAGGGAGCTTGACTTGCATCATCTGGGCTTTCACAGAAATGGTCGCTCACAACAAAAGAAGGCCATTTTAGTGGTGTTCACCAGGTCCAAGAAGAGACAGACCCTTTTcagtgaaaggagagaaggaaggacatTGATTGGCCATGGGGaaaaggggaaagagaggggccCTCGTTCTAATTCCAAAGCCAGCCGGAGACGCAGGACGGCGCTATTGAAGAATCGCCATGGGAAGAGGCATGGCAAAAAGTCAAAATCGAGATGCAGCAAGAAGCCGTTGCATGTGAACTTCAGAGAGCTGGGCTGGGACGATTGGATCATCGCTCCTCTGGATTACGAGGCGTACCACTGTGAGGGCGTGTGTGACTTTCCTCTGAGGTCACATCTAGAGCCCACAAACCATGCCATCATACAGACCCTTATGAATTCTATGAACCCCAGCAACATGCCTCCTAGCTGCTGTGCCCCGTCCAAACTCAGCCCTATCAGTATTCTCTACATCGACTCAGGAAATAATGTGGTGTATAAGCAGTATGAGGATATGGTGGTAGAGTCGTGTGGTTGTAGGTAATGCCTTTTTGGAAAGGCTGTGTTTTGAGTGGGAATGAAATGTGATCATCAGGGCCTATCTGGTGTGAAGGCAATACTTTAAGCTACCTGatgggctgcatcccaaatggcacccttttcactatgtagtgcactacttttgatctatagggctctggtcaaaagtagagcactatataggcaatagggtgtcatttgggaccagAGCGCCTTGTCTAATATTGTAAAATGGTGTGGTGGGATTAATAATCACCTGCCCCAAACTAAGCCATGTTCATTTCTTCTTCCCTGGTCTGGTTCTCAGTTTAAGACTGGTAAGCGAGGCTACTTCTTCCCTGAACCCTGTTACGTGTTTTTATTTACCAGTTAACGGGAGGGACACTTCTAAACACCCAGCAAATGACTGAAAATCAAAATGTGTCATATCAATGTAAAAACATAATTCAAACAGCAGAAGTCCTTTCATAGCTCCTTGGCTTGGCCTTTGACTCGAGAGGATGCTTGAGTGCTACTCAGAATGTAAAGCCTTATTGAGTTGCAACATCTGTGTAATTCAAGTGCACTCCCACCCAAAATGCCCCCAGGCTTAGACTACTTAGCCAAGGGctcagtctgtgttccaaatggcaccctattccctacatagctaCATAGTGTAGTGCACACAATATATAGGGAAttaggtgccattttggacgtagTCATGTTGTGGTTAGATACAAGGTGATAAAATAATGCCCATGAGCCTTTTCCTGTAATGCACTGAGATTCATATTACCATATGTAAGCACTTGACATGGAAATTATAATTTATGTTCTATCAATAAGttattatatttttgttgttggagTTTGCTGTCGGGGTTTAATACCTATCATGTTTTGGTCCTGTACAAGATTGTATTTCAGGTCCCATAAATGAACAACAACTTTGAAGGCTTAACAAAGCCTTCATGAACCATGTGTAGATGGTTCAGAACGTATGTATTAATAAGAAAATTCATACTATTTCAAAGGTAACGTACAGTATGGGGTTTGTAAAGCATCTATGAAGACCTTATAAATTATGGTTTCAGAAAGTCTTAAAAGTTGCTGTTTGTTTATATTTCAAAACTTTAAAGATTGTATTTTGTAAAACTTCTGGTGTAGATTTGAACAAGCAAAGAATGAGGGAGCCTTAACTGTTAAAACAGGAAATTATTACCAGTCAGAAAAAAAGACCCCTGTGTTTTTGCAATGATATACTGCTCCATAGTTTATAGACTGTTACTTTAGAGTGTTACTTTAGAGTCATCTTTGTTGGATTTTGTATTTTACTTTCTATTTTCTACTGGAACTCAAAACCAATTTATTTAATATTCTCTAACAAATTTAAAACAGATttacaaatgttttttatttcccttaactaggcaactcagttaagaacaaattcttattttcaatgacaaccaAATTATATATTCCTTTTTTTACCTGTTAAGGTTACATGTTTTATATAATAGTATATTAAATTATCTTTTTTGTATTATGTATTTTGATTATATTTTCCAAAATATGTGTATCATTGCGTTACTCGATTGTGCAGTGTCACTATAGTCGAGTGGCGGTCGGtgacgtttaagatgagggaggacgattatTTTCTTTATGAGCATGgctttatttctattacagcatattggatgactgttattcatatttcattcacccagctcaatgtaacatcaacaGTTTTAGGCTATGATACTTACATTTTTcatgtacccatcatgaggttgctacaatttagcctatgaatgaaattTACCACATAGATGCACAGGTCGATTAATCAaggagacagacagtgacacattcagtaCCACCTTgaacactcttgcctgcatctagctgatcaaGGTTGTGATCATTAGTCcgacagttgcaaacaagagtttctattggacaaactCAGGAATGTTTATCCTcatttcgttccgtttgcttaagtttcaaaaatgtttttcaacagaatctgcggaatgaatacacccttgATCACACGCAAACAAAGTTCACTTTCGTAAcacccacatacaaacagcagGATAATTTTGCTCAATGTAAAATTCCTTCATGTATCTGTGCGCTCTCCTCTTCTCGCATTTTCCTTTCGCTTGTAGACTTCCATGCACAAAAcgtcagctgtctgtgaccaagcaaaaaaaaacaagccaaaccttcatatcataaccgccaaccgctacacacaaactatctacaTCGCCGAAGCAACTAGAACTAAcacattagtaaacccgctacaatcatgcagtacagtgtacagtcagcaagcagtttagtgGTTACACTGGCGAGCCCCAGTTGCAATAGATTTATAAaatcaaaagcttaccttgacttggaagagttccagtgttggatagccatagccagccaGCAATCATAgcctccctctctgtttgagtaggctaaactagctagctgcatttgctagctaagtgaaagtaaaaacaaacaaaaaatatatctCTTGCTTCTTCATTTTGGTGTTCATTTTGGTGTTAGTgtctgtgggacccattttcaatgtttactaaaaGAAAAGTAATACAATTAGTTATTTCttcaacctgagactcattggccttgactcattttctgtgaagaacatgtaaaataacacatgttcattgagtgcacactgtgcacccccttacacatttatattacatatgtggtgtttgGGTCTACTGGACCCGAGGGTAATAAAagtgtggaaaagtgtgtgtgcagGTGAA

Function

symbol description
gdf6 Predicted to enable cytokine activity and identical protein binding activity. Involved in positive regulation of chondrocyte differentiation; positive regulation of nitrogen compound metabolic process; and transmembrane receptor protein serine/threonine kinase signaling pathway. Acts upstream of or within with a positive effect on metanephros development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Implicated in several diseases, including Klippel-Feil syndrome 1; Leber congenital amaurosis 17; cleft lip; isolated microphthalmia 4; and multiple synostoses syndrome.

NR:

description
growth/differentiation factor 6

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571709.2 False 4458 mRNA 0.41 2 34179033 34183891
XR_005037435.1 True 4379 mRNA 0.41 3 34179033 34183891

Neighbor

gene id symbol gene type direction distance location
lrp12 lrp12 coding downstream 311602 33828341 ~ 33867431 (-)
vps72a vps72 coding downstream 365732 33783934 ~ 33813301 (-)
LOC110496051 LOC106588219 coding downstream 432248 33697163 ~ 33746785 (-)
LOC110496050 csnk2b coding downstream 483124 33692392 ~ 33695909 (-)
LOC110496049 LOC106588217 coding downstream 504729 33657641 ~ 33674304 (-)
LOC118940975 LOC106611608 coding upstream 51497 34235388 ~ 34237566 (-)
fbxl6 fbxl6 coding upstream 411340 34595231 ~ 34619367 (-)
nfatc1 LOC106588230 coding upstream 461225 34645116 ~ 34704821 (-)
atp9b atp9b coding upstream 553936 34735374 ~ 34794929 (-)
sall3b LOC106588232 coding upstream 611503 34795394 ~ 34808500 (-)
G1541337 NA non-coding downstream 5298 34173511 ~ 34173735 (-)
G1541334 NA non-coding downstream 7275 34171442 ~ 34171758 (-)
G1541313 NA non-coding downstream 19069 34159717 ~ 34159964 (-)
G1541308 NA non-coding downstream 23580 34151912 ~ 34155453 (-)
G1541295 NA non-coding downstream 36097 34142597 ~ 34142936 (-)
G1542514 NA non-coding upstream 116070 34299961 ~ 34300868 (-)
G1542543 NA non-coding upstream 174664 34358555 ~ 34363965 (-)
G1542566 NA non-coding upstream 218673 34402564 ~ 34402790 (-)
G1542567 NA non-coding upstream 219155 34403046 ~ 34403265 (-)
G1542574 NA non-coding upstream 228280 34412171 ~ 34412443 (-)
G1541318 NA other downstream 16575 34161927 ~ 34162458 (-)
LOC110496048 LOC106588215 other downstream 568140 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 787281 33391339 ~ 33391752 (-)
G1540148 NA other downstream 1242464 32899578 ~ 32936569 (-)
G1542988 sast other upstream 953746 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 991415 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 1163004 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 1268727 35452618 ~ 35504157 (-)

Expression


Co-expression Network