LOC118940975 (LOC106611608)


Basic Information

Item Value
gene id LOC118940975
gene name LOC106611608
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34235388 ~ 34237566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118940975
ATGAAGAGCTTCCTGGGCCTGACCTTGTACTACAGGAGGTTTGTATGGGGCTTCTCAAGCGTCGCTGCTCCCCTGAACCGCCTGATGCTGAAGGACAAGGCCTTGGAGTGTGAGGAGGCCTTCAACACCCTCAAACATGTACTTATCAGGGCCCCCGTGCTTGCCCCTCCTGATCTCACCTTGCCCTTTATCCTGGACACAGACGCAAGCAATGTGGGCATGGGTGGGGTGCTGGCCCAGGTGGGgccagagtgggagagagtggaGCAAAACATTTGACAAACATGAGCGCTGCTACTGTGTCACCCGGCGGGAGCTCCTTGCTGTTGTGGCTTCCATCAAACACATCAAGTACTAACTGGGTGGCCTGCCATTTATAGTAAGAACTGACCACTCTGCTCTTCAGTGGCTCATGTCTTTCAGAGAGCCAGAGGGGCAGGTGGCACGCTGGTTGCAGGAGCTTCAGCCCGTACGACTTCATAGTGGTGCACAGGGCAGGGGCACGCCATTCCAATGCCGACGCCATGTCCCGTACTGTACTGCAGACGGCTGCCGCcactgagcagagagagggacGTGAGAAAGAGCTGTGTGCAGAGGAGGGGGTCTGTGCCACAGTGTGTCGGTTACCAGTGGGGGCTCCcatggagagggtgggaggggatGTAGTTGGGCCGTTCCCCACCACAGACAGTGGAAACCGCTGGGTGCTCACGGCCATGGACTATTTCACAAAATGGCCCGAGGCCTATGCTCTGCATGACCAGGAGGCAGAGACCATCGTCGATGCCCTGACAGCGGGGATGTTCAGCAGGTTTGGCGCTGCGGAGTCCATCCACAGCGACCAAGGCAGAAACATTGAGTCCCGTGTGTTCGCCACCATGTGTGAGAGGCTGGGTATGCACAAGACAAGCACTACTCCTCTCCATCGTCAAAGTGATGGGCTTGTGGAGCGCTTCAACAAAACGCTTGGACAGCAGCTGGCCATTGTCTTTGCCAAACACCAGCGGGACTGGGACAAGCACCTGCTTATGACCTCCTGCACGCCTGCCCTCCTCATCCTGGGGAGAGAGATCCGCACCCCTGCAGAGATGGTGTTTGGTCGGCCCCTGGACAGCCATCATGTTCCCCCGGGGCCGGAGTATTCCCGGAGACTCCAGGACCGCCTGGAGACAGCCCACACCTCCACCAGAGAGCAGCTGGTGAATTCAGGTGTGAGGCAGAAGAGGAACTATGACGTGCATACCAGGGCACCCACCCCCAGGTGCCGCAGACAGGGCTCCAGACAGCCAAGTCTCCCGCCCTGTGTCACCGCACGGTTCCCTGGAGCCACGGACTATATTACCCGTTCCCGCATCCTTGTCCCACATATCCCTGCCTTCCTCCCCTGGGTCCCAGAGAGGCAGCCCCCTGCCACGAACTGA

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC110017228

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118940975 True 1424 mRNA 0.59 4 34235388 34237566

Neighbor

gene id symbol gene type direction distance location
gdf6b gdf6 coding downstream 51497 34179033 ~ 34183891 (-)
lrp12 lrp12 coding downstream 367957 33828341 ~ 33867431 (-)
vps72a vps72 coding downstream 422087 33783934 ~ 33813301 (-)
LOC110496051 LOC106588219 coding downstream 488603 33697163 ~ 33746785 (-)
LOC110496050 csnk2b coding downstream 539479 33692392 ~ 33695909 (-)
fbxl6 fbxl6 coding upstream 357665 34595231 ~ 34619367 (-)
nfatc1 LOC106588230 coding upstream 407550 34645116 ~ 34704821 (-)
atp9b atp9b coding upstream 500261 34735374 ~ 34794929 (-)
sall3b LOC106588232 coding upstream 557828 34795394 ~ 34808500 (-)
zbtb22a LOC106588234 coding upstream 669557 34906715 ~ 34923956 (-)
G1541337 NA non-coding downstream 61653 34173511 ~ 34173735 (-)
G1541334 NA non-coding downstream 63630 34171442 ~ 34171758 (-)
G1541313 NA non-coding downstream 75424 34159717 ~ 34159964 (-)
G1541308 NA non-coding downstream 79935 34151912 ~ 34155453 (-)
G1541295 NA non-coding downstream 92452 34142597 ~ 34142936 (-)
G1542514 NA non-coding upstream 62395 34299961 ~ 34300868 (-)
G1542543 NA non-coding upstream 120989 34358555 ~ 34363965 (-)
G1542566 NA non-coding upstream 164998 34402564 ~ 34402790 (-)
G1542567 NA non-coding upstream 165480 34403046 ~ 34403265 (-)
G1542574 NA non-coding upstream 174605 34412171 ~ 34412443 (-)
G1541318 NA other downstream 72930 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 561157 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 624495 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 843636 33391339 ~ 33391752 (-)
G1540148 NA other downstream 1298819 32899578 ~ 32936569 (-)
G1542988 sast other upstream 900071 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 937740 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 1109329 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 1215052 35452618 ~ 35504157 (-)

Expression


Co-expression Network