LOC110496061 (LOC106588154)


Basic Information

Item Value
gene id LOC110496061
gene name LOC106588154
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34297184 ~ 34300652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571711.2
GGCAGCCTGCCTGAGCCCTGCGCGTGGGAGGGGTCTGTCAAAGCCTTCGCTCTCTAATTATCCAAGCAATAGAAGAAGCAAGGGACGGGGAGGTGACCAGCAGAAATATTCGGGGAAAACAAAAGCGAGCTGGAAATGGAAAATTTTAAAATAGCTGATTTAGAACCCCTCTGCTTTGATCAAGAGGACAGTCGGTCAGATCCCACAAAAAGCCTCCCATGGGCTTCAAACTACCAACGCATCAATAAAAAGTCACTTTCCAACGAGCATCGTTGCGATTCGGGGAATTGGGAGACTGCCTGCGCGGATTCAGGACAATGGCCAACTGCCTCCGGAGACGGGCAGCCCGGCGCAATCAGCCAGCGGGGAGCAGAAGCTGAGAGAACCGTATGTTGTCTAGAGGAATTGGAGACATCTTTCACACGCAAATGCGAGGATTTCAATTTACAACAGGAGAACAGTCCGCAGCAGTCCGCAAGGATCAACAACGGAAGCCTGAGTCACAGCTCCTTCGACGAACTCCACGACGGTGTCCCGGAACTGTCCATGTTGTCAGACAATGAGTTTACATCCGAAGCCTTGGGGAAATCAGCGGATTACGGTTTCATAAGTGCTGTCACTTGCCTGGTGACTGGAATCTCGTTAGTAGCCATCTCCTACACTGTTCCCCGGGAAGTTAAAGTGAACCCGGACAGTGTGTCGGCCcgggagatggagagactggagagggagAACGCCCTGGTAGGGGTTCACCTGGATCGGTGGGTTATAGCAGGGCTGTGCCTGCTCACCCTCGGGGGTGTGGTCCTCTCCACCCTGCTCATGGTGTCTTTGTGGAAAGGGGAGATGTTGAGGAGAAGGGCCTTCACCTACTCCAAACAGTCTGCACAATTATATGGCTCTATCAATTTAAAAGGGGGCTCAAACCCACCTAATGTCCCCTCCCAATTGTCTGTGAAAGATTTGGAAGAGGTCCTAAATTGACATTATGTACAATTGTAAAGACACGGACTAATCTCTATCACAGAAAGTCCCTCTGCAACTCTTACCAATGGTGTCTTAAGATAATGCTGCTTTGATTTGTGCATTTCATGCATGTAGCCTACTGGGAATATTCCATTCCCCATGTAGAATGCTCCTTGCCTAAAATGGATGGGTATTATTTGAAATATTGGCTGAATTTACCCTCCGACATAAGTTTGTGTTGTGCAGACCATAACATCTTATTAGCATGAGATTCATCATTTTTGTCAAAGCAATGGTTTATTCTGTGTATATAGTGTCTTAAAAGTTTAAATTGGATATCATGTTGTATCAGATTTAAAAGACAATTGCATGATCAACACTGGAAATACAAACACGTGTCCATATTTGTTTTTTGCTATGCATACAAAATGCAAATACTTAGCTAAGACAAATAATAATACAAGGGTTATGTTTGTGAGTAGCTCAGTGAATACTCAATACACTAGGATATTGGACAGCAGATATTCAAAAACACAAATGatacacgacacacacacacacgccttagGAGGGTTAGCTGGTTAAGGTGCTCTGAACAAACAAACTGTTGTCGGTGTCTAAAATTGCACCCTATttcttatttagtgcactacttttgacctactCCTAGGGAATCAGGTGCCATCTGGGACGCAAACATTGTGTCCCTTGCTTATGGTGAGCATAATGCTGTGCAGTGCAGGTTCAGTAATAGAATGTTTACAGTATGCAGGATCAGATTATACTCACCAGCCTTTGTAAGCATGTAGCACTAACCATTGCCAAGATGCACACTTATTTTACCTCTTAGCGCCGTAATTGAATGTATGACTTGCCTGTCTATGTATTACCTACATGTTAAGTGGACTTGTAATCCATCCTCATTTAGTGTTGTTCACTGAGGGTATAAGTAGGGGTGCTCCAAATGTGAGAGGATAAATATGTATATTGTGTCATTTAAGCAAAGTTGAAAAGGCTTCAAAGGTAGGCTATTTATTTTAAATAAGCAGATCTTAATCATATCTTGAGTGGGGGCTGGGCACTACAGCTGACAACCacccactgtctttctctcactcactcacccactcactctcacacacacacacacgcaagcccCCCCTCCCCTGAACAGAGTCACTGAGTAATCCGTCAGGCCAGCTGGCAGCAGGAAATGGAATTGGAGTGCTGCAGGGGTCACGTGGGGTCAAGAGCTAGTTTGTGGCAGTTGTGGCCCCTGGGGATCAGGAAGTGAAGACACATGCGGTGGTAATGGCTGTGgctcaaatggcaccatattcactatgggccctggtcaaaagtagtgcactatataggaagtaGTGTCAGGGTGAAATTTTGAGACATAGCCAATCTATCTTATCCGATGTGGCATCCAGTTATCATCAACTGTCATAGCATGTGAAGGGAAAGTGTTCAAAATTTATTTTTGCTTAATGAGTTGGCAGTGAGGTCATTCCTGCAATTTAAAAATTCCTTTCGGATTCATAACCTTAGTTAATAGCTTATTCGATAATGATTCTCATTACCCAGTGTTTGTTGCATAGCAACGACAGGCTGAGTAAAGGAAGACCAGGGAAGAAGTGACAAAGGAGATGTTTTTACTGAGACAAGGAAGAAGTGTGAATATAGCACCTAATGTATCTTATTGATAtcttattgattgattgattgcatgTATAAAGTAGTAGGCAGCTCCAGCCAGAGATaacattacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggct
>TU1764072
TAGCACTAACCATTGCCAAGATGCACACTTATTTTACCTCTTAGCGCCGTAATTGAATGTATGACTTGCCTGTCTATGTATTACCTACATGTTAAGTGGACTTGTAATCCATCCTCATTTAGTGTTGTTCACTGAGGGTATAAGTAGGGGTGCTCCAAATGTGAGAGGATAAATATGTATATTGTGTCATTTAAGCAAAGTTGAAAAGGCTTCAAAGGTAGGCTATTTATTTTAAATAAGCAGATCTTAATCATATCTTGAGTGGGGGCTGGGCACTACAGCTGACAACCacccactgtctttctctcactcactcacccactcactctcacacacacacacacgcaagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571711.2 False 2808 mRNA 0.45 2 34297184 34300652
TU1764072 True 352 lncRNA 0.41 1 34299617 34299968

Neighbor

gene id symbol gene type direction distance location
trhrb LOC106588145 coding upstream 31714 34261312 ~ 34265470 (+)
LOC110496058 LOC106588349 coding upstream 163450 34127192 ~ 34133734 (+)
ints8 ints8 coding upstream 180902 34092247 ~ 34116282 (+)
LOC110496056 dpy19l4 coding upstream 208624 34080108 ~ 34088560 (+)
LOC110496055 LOC106588221 coding upstream 237224 33938682 ~ 34059960 (+)
pleca LOC100194709 coding downstream 75444 34376096 ~ 34579125 (+)
LOC110496064 NA coding downstream 173895 34474547 ~ 34482054 (+)
LOC110496065 LOC106588226 coding downstream 317902 34618554 ~ 34624236 (+)
LOC110496068 slc52a2 coding downstream 326804 34627456 ~ 34632957 (+)
LOC110496067 LOC106588229 coding downstream 332574 34633226 ~ 34640621 (+)
G1541404 NA non-coding upstream 6762 34217282 ~ 34290422 (+)
G1541344 NA non-coding upstream 118678 34178290 ~ 34178506 (+)
G1541304 NA non-coding upstream 144872 34151433 ~ 34152312 (+)
G1541300 NA non-coding upstream 149338 34147598 ~ 34147846 (+)
G1541278 NA non-coding upstream 162378 34134122 ~ 34134806 (+)
G1541496 NA non-coding downstream 6198 34306850 ~ 34311736 (+)
G1541610 NA non-coding downstream 256975 34557627 ~ 34558111 (+)
G1541643 NA non-coding downstream 325825 34626477 ~ 34626974 (+)
G1540996 NA other upstream 218110 34078718 ~ 34079074 (+)
LOC110496043 LOC106588212 other upstream 759620 33535229 ~ 33537569 (+)
G1540551 NA other upstream 806063 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 838760 33455560 ~ 33458964 (+)
mbpa LOC106588233 other downstream 582862 34883492 ~ 34898413 (+)
G1541989 NA other downstream 981951 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 1074592 35373871 ~ 35386463 (+)
G1542052 LOC106588245 other downstream 1101185 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 1178183 35478835 ~ 35502933 (+)

Expression


Co-expression Network